LOC110533060 (gnb4)


Basic Information

Item Value
gene id LOC110533060
gene name gnb4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10012701 ~ 10048677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938569.1
CTACATAACTGCTCTTCCTTGCAATATTTAGTCACTGAGTGTAGAGGGAGAACTAAAACCTCACGCCGTCTGTCTGCTTACAGTCCATGCACTTAAGGACATATGTGGAAAACGCCTACTTCCTCTCCCACTTATCTACACTGAAAAAAAGTATTCCTGAACACATCACAGAGGGACAATGAGTGAGCTGGAACAGTTACGGCAGGAAGCAGAGCAACTACGCAATCAAATccgggaTGCTAGGAAAGCCTGTAGTGACTCCACTCTTTCACAGATCACAGCTGGTCTGGACTCAGTGGGCCGGATACAGATGAGGACGCGGCGTACTCTCAGGGGCCACCTCGCCAAGATCTATGCAATGCACTGGGGCACCGACTCCAGGTTACTTGTAAGCGCCTCCCAAGATGGCAAATTAATCATTTGGGACAGTTACACAACTAACAAGATGCATGCCATCCCGCTGCGCTCCTCCTGGGTGATGACCTGTGCCTACGCGCCCTCTGGGAACTACGTGGCGTGCGGAGGCCTGGACAACATCTGTTCTATCTACAGCCTGAAGACCCGCGAGGGAAACGTGCGCGTCACCCGCGAGCTACCCggacacacagGCTATTTGTCTTGCTGTCGTTTCCTGGATGACAACCAGATTGTCACTAGTTCAGGGGACACAACCTGTGCTTTATGGGACATCGAGACGGGTCAGATGGCCACCAGCTTTACGGGCCACACGGGGGACGTGATGAGCCTGTCCCTTAGTCCCGACTTCAAGACCTTTGTGTCGGGGGCCTGTGACGCCTCCTCCAAGCTGTGGGATGTCCGGGACGGCATGTGCAGGCAGTCCTTCACTGGCCACGTGTCCGACATTAACGCTGTCTGCTTCTTCCCCAACGGCAACGCCTTTACCACGGGCTCGGACGACGCCACCTGCCGCCTGTTTGACCTGCGCGCCGACCAAGAGCTGATGATGTACTCGCACGACAACATAATCTGCGGCATCACCTCAGTGGCCTTCTCCAAGAGTGGTCGTCTGCTGCTGGCCGGCTACGACGACTTCAACTGCAACGTGTGGGACACCCTCAAGGCAGAGCGTGCAGGTGTCCTGGCCGGTCACGACAACAGGGTGAGCTGTTTAGGCGTGACAGACGACGGCATGGCTGTAGCCACGGGCTCATGGGACAGTTTCCTCAGAATCTGGAATTAAACCCTCCAGCTCacgtcctcctctctcccccctccaccattCCACCCACTCATACTGCTGGGCTTGGACTTGAGGGTGAACACTGTCTCCCATCACCAACGTCCCGTCCACCACCATCCACAGCCAGAGTAACAACtctttctacattttttttttttactcacttATTAATTACACAGAGCTCTCAGTACCCACAGTTAGAATGACCAATCAAAGAAaaatgaaaaagaaaaaaaaacaacctcGCATCCCCCTCTTGTTTTTGGACAGGTGAAGCACTAGAGCGCATGTTACCGTGGTTACCGCCAAATTAGAGGACAGTCCC
>XM_036938421.1
TAACTGCTCTTCCTTGCAATATTTAGTCACTGAGTGTAGAGGGAGAACTAAAACCTCACGCCGTCTGTCTGCTTACAGTCCATGCACTTAAGGACATATGTGGAAAACGCCTACTTCCTCTCCCACTTATCTACACTGAAAAAAAGGTATCAActcgtctgtgtgtgttttttttattttttacaaacccAGTATTCCTGAACACATCACAGAGGGACAATGAGTGAGCTGGAACAGTTACGGCAGGAAGCAGAGCAACTACGCAATCAAATccgggaTGCTAGGAAAGCCTGTAGTGACTCCACTCTTTCACAGATCACAGCTGGTCTGGACTCAGTGGGCCGGATACAGATGAGGACGCGGCGTACTCTCAGGGGCCACCTCGCCAAGATCTATGCAATGCACTGGGGCACCGACTCCAGGTTACTTGTAAGCGCCTCCCAAGATGGCAAATTAATCATTTGGGACAGTTACACAACTAACAAGATGCATGCCATCCCGCTGCGCTCCTCCTGGGTGATGACCTGTGCCTACGCGCCCTCTGGGAACTACGTGGCGTGCGGAGGCCTGGACAACATCTGTTCTATCTACAGCCTGAAGACCCGCGAGGGAAACGTGCGCGTCACCCGCGAGCTACCCggacacacagGCTATTTGTCTTGCTGTCGTTTCCTGGATGACAACCAGATTGTCACTAGTTCAGGGGACACAACCTGTGCTTTATGGGACATCGAGACGGGTCAGATGGCCACCAGCTTTACGGGCCACACGGGGGACGTGATGAGCCTGTCCCTTAGTCCCGACTTCAAGACCTTTGTGTCGGGGGCCTGTGACGCCTCCTCCAAGCTGTGGGATGTCCGGGACGGCATGTGCAGGCAGTCCTTCACTGGCCACGTGTCCGACATTAACGCTGTCTGCTTCTTCCCCAACGGCAACGCCTTTACCACGGGCTCGGACGACGCCACCTGCCGCCTGTTTGACCTGCGCGCCGACCAAGAGCTGATGATGTACTCGCACGACAACATAATCTGCGGCATCACCTCAGTGGCCTTCTCCAAGAGTGGTCGTCTGCTGCTGGCCGGCTACGACGACTTCAACTGCAACGTGTGGGACACCCTCAAGGCAGAGCGTGCAGGTGTCCTGGCCGGTCACGACAACAGGGTGAGCTGTTTAGGCGTGACAGACGACGGCATGGCTGTAGCCACGGGCTCATGGGACAGTTTCCTCAGAATCTGGAATTAAACCCTCCAGCTCacgtcctcctctctcccccctccaccattCCACCCACTCATACTGCTGGGCTTGGACTTGAGGGTGAACACTGTCTCCCATCACCAACGTCCCGTCCACCACCATCCACAGCCAGAGTAACAACtctttctacattttttttttttactcacttATTAATTACACAGAGCTCTCAGTACCCACAGTTAGAATGACCAATCAAAGAAaaatgaaaaagaaaaaaaaacaacctcGCATCCCCCTCTTGTTTTTGGACAGGTGAAGCACTAGAGCGCATGTTACCGTGGTTACCGCCAAATTAGAGGACAGTCCC
>XM_036938604.1
CTTCCCAATCCACTGTGTGGCTCAAGAGCCACAGCTGTAACCGATACAACATGATGAAGGAATAATAAATGCAGTCGGCGGTTAAAGCTCCTTcaacatttgaaaataacatcaaatgtgTGCAGAACTCTGCACTAGCTTTTCACGCACATCATTGTACCTATTTGTTTTATGTACTCCGTTCTTTCGTTTTATTGAGGGAGCTGACAGACAATACCATTTTCCTGTGGGTAAAACAAAGCTATTGCGACACGATTGATTTGCTCATTATTGCACAAGAAAAACGGACACTTAATATTCCTGAACACATCACAGAGGGACAATGAGTGAGCTGGAACAGTTACGGCAGGAAGCAGAGCAACTACGCAATCAAATccgggaTGCTAGGAAAGCCTGTAGTGACTCCACTCTTTCACAGATCACAGCTGGTCTGGACTCAGTGGGCCGGATACAGATGAGGACGCGGCGTACTCTCAGGGGCCACCTCGCCAAGATCTATGCAATGCACTGGGGCACCGACTCCAGGTTACTTGTAAGCGCCTCCCAAGATGGCAAATTAATCATTTGGGACAGTTACACAACTAACAAGATGCATGCCATCCCGCTGCGCTCCTCCTGGGTGATGACCTGTGCCTACGCGCCCTCTGGGAACTACGTGGCGTGCGGAGGCCTGGACAACATCTGTTCTATCTACAGCCTGAAGACCCGCGAGGGAAACGTGCGCGTCACCCGCGAGCTACCCggacacacagGCTATTTGTCTTGCTGTCGTTTCCTGGATGACAACCAGATTGTCACTAGTTCAGGGGACACAACCTGTGCTTTATGGGACATCGAGACGGGTCAGATGGCCACCAGCTTTACGGGCCACACGGGGGACGTGATGAGCCTGTCCCTTAGTCCCGACTTCAAGACCTTTGTGTCGGGGGCCTGTGACGCCTCCTCCAAGCTGTGGGATGTCCGGGACGGCATGTGCAGGCAGTCCTTCACTGGCCACGTGTCCGACATTAACGCTGTCTGCTTCTTCCCCAACGGCAACGCCTTTACCACGGGCTCGGACGACGCCACCTGCCGCCTGTTTGACCTGCGCGCCGACCAAGAGCTGATGATGTACTCGCACGACAACATAATCTGCGGCATCACCTCAGTGGCCTTCTCCAAGAGTGGTCGTCTGCTGCTGGCCGGCTACGACGACTTCAACTGCAACGTGTGGGACACCCTCAAGGCAGAGCGTGCAGGTGTCCTGGCCGGTCACGACAACAGGGTGAGCTGTTTAGGCGTGACAGACGACGGCATGGCTGTAGCCACGGGCTCATGGGACAGTTTCCTCAGAATCTGGAATTAAACCCTCCAGCTCacgtcctcctctctcccccctccaccattCCACCCACTCATACTGCTGGGCTTGGACTTGAGGGTGAACACTGTCTCCCATCACCAACGTCCCGTCCACCACCATCCACAGCCAGAGTAACAACtctttctacattttttttttttactcacttATTAATTACACAGAGCTCTCAGTACCCACAGTTAGAATGACCAATCAAAGAAaaatgaaaaagaaaaaaaaacaacctcGCATCCCCCTCTTGTTTTTGGACAGGTGAAGCACTAGAGCGCATGTTACCGTGGTTACCGCCAAATTAGAGGACAGTCCC
>XM_036938466.1
TCCCAATCCACTGTGTGGCTCAAGAGCCACAGCTGTAACCGATACAACATGATGAAGGAATAATAAATGCAGTCGGCGGTTAAAGCTCCTTcaacatttgaaaataacatcaaatgtgTGCAGAACTCTGCACTAGCTTTTCACGCACATCATTGTACCTATTTGTTTTATGTACTCCGTTCTTTCGTTTTATTGAGGGAGCTGACAGACAATACCATTTTCCTGTGGGTAAAACAAAGCTATTGCGACACGATTGATTTGCTCATTATTGCACAAGAAAAACGGACACTTAAGTATCAActcgtctgtgtgtgttttttttattttttacaaacccAGTATTCCTGAACACATCACAGAGGGACAATGAGTGAGCTGGAACAGTTACGGCAGGAAGCAGAGCAACTACGCAATCAAATccgggaTGCTAGGAAAGCCTGTAGTGACTCCACTCTTTCACAGATCACAGCTGGTCTGGACTCAGTGGGCCGGATACAGATGAGGACGCGGCGTACTCTCAGGGGCCACCTCGCCAAGATCTATGCAATGCACTGGGGCACCGACTCCAGGTTACTTGTAAGCGCCTCCCAAGATGGCAAATTAATCATTTGGGACAGTTACACAACTAACAAGATGCATGCCATCCCGCTGCGCTCCTCCTGGGTGATGACCTGTGCCTACGCGCCCTCTGGGAACTACGTGGCGTGCGGAGGCCTGGACAACATCTGTTCTATCTACAGCCTGAAGACCCGCGAGGGAAACGTGCGCGTCACCCGCGAGCTACCCggacacacagGCTATTTGTCTTGCTGTCGTTTCCTGGATGACAACCAGATTGTCACTAGTTCAGGGGACACAACCTGTGCTTTATGGGACATCGAGACGGGTCAGATGGCCACCAGCTTTACGGGCCACACGGGGGACGTGATGAGCCTGTCCCTTAGTCCCGACTTCAAGACCTTTGTGTCGGGGGCCTGTGACGCCTCCTCCAAGCTGTGGGATGTCCGGGACGGCATGTGCAGGCAGTCCTTCACTGGCCACGTGTCCGACATTAACGCTGTCTGCTTCTTCCCCAACGGCAACGCCTTTACCACGGGCTCGGACGACGCCACCTGCCGCCTGTTTGACCTGCGCGCCGACCAAGAGCTGATGATGTACTCGCACGACAACATAATCTGCGGCATCACCTCAGTGGCCTTCTCCAAGAGTGGTCGTCTGCTGCTGGCCGGCTACGACGACTTCAACTGCAACGTGTGGGACACCCTCAAGGCAGAGCGTGCAGGTGTCCTGGCCGGTCACGACAACAGGGTGAGCTGTTTAGGCGTGACAGACGACGGCATGGCTGTAGCCACGGGCTCATGGGACAGTTTCCTCAGAATCTGGAATTAAACCCTCCAGCTCacgtcctcctctctcccccctccaccattCCACCCACTCATACTGCTGGGCTTGGACTTGAGGGTGAACACTGTCTCCCATCACCAACGTCCCGTCCACCACCATCCACAGCCAGAGTAACAACtctttctacattttttttttttactcacttATTAATTACACAGAGCTCTCAGTACCCACAGTTAGAATGACCAATCAAAGAAaaatgaaaaagaaaaaaaaacaacctcGCATCCCCCTCTTGTTTTTGGACAGGTGAAGCACTAGAGCGCATGTTACCGTGGTTACCGCCAAATTAGAGGACAGTCCC
>XM_036938528.1
ACATGTTTTAGAAATAGGTCATATTAAAACAAACTACATCTCTGTGAGTGCACCCCTCGGCGCACTGTTGCCATGTTCCCAGTTTCCTCATGGGTGTGGTGATTAGATTGGCTGGTGAACATTCTGTCAAATCCTGACCGAGTTGCGCGAGCCCCTGGCCCTTTAAATCAGTTAAATTGTCTTAAAATTAATACCGCTATCTTGACATTTCTTTCACAACCGAGACCATGTTTGCCATTTGAAAACGGACTATCGTAACACTGATTGGAACGACGTGGACAGTCCCAAAAAAATCCAGTTTCAGTATTCCTGAACACATCACAGAGGGACAATGAGTGAGCTGGAACAGTTACGGCAGGAAGCAGAGCAACTACGCAATCAAATccgggaTGCTAGGAAAGCCTGTAGTGACTCCACTCTTTCACAGATCACAGCTGGTCTGGACTCAGTGGGCCGGATACAGATGAGGACGCGGCGTACTCTCAGGGGCCACCTCGCCAAGATCTATGCAATGCACTGGGGCACCGACTCCAGGTTACTTGTAAGCGCCTCCCAAGATGGCAAATTAATCATTTGGGACAGTTACACAACTAACAAGATGCATGCCATCCCGCTGCGCTCCTCCTGGGTGATGACCTGTGCCTACGCGCCCTCTGGGAACTACGTGGCGTGCGGAGGCCTGGACAACATCTGTTCTATCTACAGCCTGAAGACCCGCGAGGGAAACGTGCGCGTCACCCGCGAGCTACCCggacacacagGCTATTTGTCTTGCTGTCGTTTCCTGGATGACAACCAGATTGTCACTAGTTCAGGGGACACAACCTGTGCTTTATGGGACATCGAGACGGGTCAGATGGCCACCAGCTTTACGGGCCACACGGGGGACGTGATGAGCCTGTCCCTTAGTCCCGACTTCAAGACCTTTGTGTCGGGGGCCTGTGACGCCTCCTCCAAGCTGTGGGATGTCCGGGACGGCATGTGCAGGCAGTCCTTCACTGGCCACGTGTCCGACATTAACGCTGTCTGCTTCTTCCCCAACGGCAACGCCTTTACCACGGGCTCGGACGACGCCACCTGCCGCCTGTTTGACCTGCGCGCCGACCAAGAGCTGATGATGTACTCGCACGACAACATAATCTGCGGCATCACCTCAGTGGCCTTCTCCAAGAGTGGTCGTCTGCTGCTGGCCGGCTACGACGACTTCAACTGCAACGTGTGGGACACCCTCAAGGCAGAGCGTGCAGGTGTCCTGGCCGGTCACGACAACAGGGTGAGCTGTTTAGGCGTGACAGACGACGGCATGGCTGTAGCCACGGGCTCATGGGACAGTTTCCTCAGAATCTGGAATTAAACCCTCCAGCTCacgtcctcctctctcccccctccaccattCCACCCACTCATACTGCTGGGCTTGGACTTGAGGGTGAACACTGTCTCCCATCACCAACGTCCCGTCCACCACCATCCACAGCCAGAGTAACAACtctttctacattttttttttttactcacttATTAATTACACAGAGCTCTCAGTACCCACAGTTAGAATGACCAATCAAAGAAaaatgaaaaagaaaaaaaaacaacctcGCATCCCCCTCTTGTTTTTGGACAGGTGAAGCACTAGAGCGCATGTTACCGTGGTTACCGCCAAATTAGAGGACAGTCCC
>XM_021617177.2
CATGTTTTAGAAATAGGTCATATTAAAACAAACTACATCTCTGTGAGTGCACCCCTCGGCGCACTGTTGCCATGTTCCCAGTTTCCTCATGGGTGTGGTGATTAGATTGGCTGGTGAACATTCTGTCAAATCCTGACCGAGTTGCGCGAGCCCCTGGCCCTTTAAATCAGTTAAATTGTCTTAAAATTAATACCGCTATCTTGACATTTCTTTCACAACCGAGACCATGTTTGCCATTTGAAAACGGACTATCGTAACACTGATTGGAACGACGTGGACAGTCCCAAAAAAATCCAGTTTCAGGTATCAActcgtctgtgtgtgttttttttattttttacaaacccAGTATTCCTGAACACATCACAGAGGGACAATGAGTGAGCTGGAACAGTTACGGCAGGAAGCAGAGCAACTACGCAATCAAATccgggaTGCTAGGAAAGCCTGTAGTGACTCCACTCTTTCACAGATCACAGCTGGTCTGGACTCAGTGGGCCGGATACAGATGAGGACGCGGCGTACTCTCAGGGGCCACCTCGCCAAGATCTATGCAATGCACTGGGGCACCGACTCCAGGTTACTTGTAAGCGCCTCCCAAGATGGCAAATTAATCATTTGGGACAGTTACACAACTAACAAGATGCATGCCATCCCGCTGCGCTCCTCCTGGGTGATGACCTGTGCCTACGCGCCCTCTGGGAACTACGTGGCGTGCGGAGGCCTGGACAACATCTGTTCTATCTACAGCCTGAAGACCCGCGAGGGAAACGTGCGCGTCACCCGCGAGCTACCCggacacacagGCTATTTGTCTTGCTGTCGTTTCCTGGATGACAACCAGATTGTCACTAGTTCAGGGGACACAACCTGTGCTTTATGGGACATCGAGACGGGTCAGATGGCCACCAGCTTTACGGGCCACACGGGGGACGTGATGAGCCTGTCCCTTAGTCCCGACTTCAAGACCTTTGTGTCGGGGGCCTGTGACGCCTCCTCCAAGCTGTGGGATGTCCGGGACGGCATGTGCAGGCAGTCCTTCACTGGCCACGTGTCCGACATTAACGCTGTCTGCTTCTTCCCCAACGGCAACGCCTTTACCACGGGCTCGGACGACGCCACCTGCCGCCTGTTTGACCTGCGCGCCGACCAAGAGCTGATGATGTACTCGCACGACAACATAATCTGCGGCATCACCTCAGTGGCCTTCTCCAAGAGTGGTCGTCTGCTGCTGGCCGGCTACGACGACTTCAACTGCAACGTGTGGGACACCCTCAAGGCAGAGCGTGCAGGTGTCCTGGCCGGTCACGACAACAGGGTGAGCTGTTTAGGCGTGACAGACGACGGCATGGCTGTAGCCACGGGCTCATGGGACAGTTTCCTCAGAATCTGGAATTAAACCCTCCAGCTCacgtcctcctctctcccccctccaccattCCACCCACTCATACTGCTGGGCTTGGACTTGAGGGTGAACACTGTCTCCCATCACCAACGTCCCGTCCACCACCATCCACAGCCAGAGTAACAACtctttctacattttttttttttactcacttATTAATTACACAGAGCTCTCAGTACCCACAGTTAGAATGACCAATCAAAGAAaaatgaaaaagaaaaaaaaacaacctcGCATCCCCCTCTTGTTTTTGGACAGGTGAAGCACTAGAGCGCATGTTACCGTGGTTACCGCCAAATTAGAGGACAGTCCC

Function

symbol description
gnb4 Predicted to enable signaling receptor complex adaptor activity. Involved in substantia nigra development. Located in extracellular exosome and lysosomal membrane. Implicated in Charcot-Marie-Tooth disease dominant intermediate F.

NR:

description
PREDICTED: guanine nucleotide-binding protein subunit beta-4

GO: NA

KEGG:

id description
K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938569.1 False 1526 mRNA 0.54 10 10012701 10048677
XM_036938421.1 False 1567 mRNA 0.53 10 10012706 10048677
XM_036938604.1 False 1670 mRNA 0.52 10 10027067 10048677
XM_036938466.1 False 1714 mRNA 0.52 10 10027069 10048677
XM_036938528.1 False 1679 mRNA 0.53 10 10027420 10048677
XM_021617177.2 True 1724 mRNA 0.52 10 10027421 10048677

Neighbor

gene id symbol gene type direction distance location
LOC110510920 LOC106574155 coding upstream 25006 9980527 ~ 9991542 (+)
LOC118937321 LOC106574127 coding upstream 48378 9956678 ~ 9964323 (+)
LOC118966382 LOC106574155 coding upstream 67619 9937165 ~ 9945082 (+)
LOC118937370 LOC106574127 coding upstream 87944 9917155 ~ 9924757 (+)
LOC118937372 LOC106574127 coding upstream 104816 9900861 ~ 9925501 (+)
ftsj3 ftsj3 coding downstream 38623 10087300 ~ 10096757 (+)
asb3 LOC106574148 coding downstream 48266 10096943 ~ 10101637 (+)
lim2.2 LOC106574149 coding downstream 55492 10104169 ~ 10107888 (+)
gipc3 LOC106574151 coding downstream 91553 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 coding downstream 1384425 11433102 ~ 11514427 (+)
G8266 NA non-coding upstream 634 10011850 ~ 10012067 (+)
G8265 NA non-coding upstream 1471 10011016 ~ 10011230 (+)
G8264 NA non-coding upstream 3351 10009020 ~ 10009350 (+)
G8263 NA non-coding upstream 4196 10008010 ~ 10008505 (+)
G8238 NA non-coding upstream 65441 9927839 ~ 9947260 (+)
G8253 NA non-coding downstream 2364 10051041 ~ 10053076 (+)
G8295 NA non-coding downstream 32491 10081168 ~ 10083667 (+)
G8304 NA non-coding downstream 70333 10119010 ~ 10134267 (+)
G8600 NA non-coding downstream 88657 10137334 ~ 10137566 (+)
G8651 NA non-coding downstream 171667 10220344 ~ 10222076 (+)
LOC118966784 LOC106574127 other upstream 552748 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 1756823 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1782466 8229189 ~ 8231566 (+)
G6807 NA other upstream 1975547 8036617 ~ 8037154 (+)
LOC110538561 LOC106574035 other downstream 3189936 13238613 ~ 13295452 (+)
G12410 NA other downstream 3580186 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 4143779 14192456 ~ 14214939 (+)

Expression


Co-expression Network