ftsj3 (ftsj3)


Basic Information

Item Value
gene id ftsj3
gene name ftsj3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10087300 ~ 10096757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938825.1
AGGCTTCAAACTTATATGTGACGTAAATTTCATGCGCATAGAAGCCACACGTGTTATGTTTTCATGGAGGTGGTTGGTAATCTGCTTCGGTAATTTGTAAATCGTAATATTCCAAAGGAATCACAATTTAAATAATAAGCGATCAACAACACCAGCAAACATGGGGAAGAAACTCAAAGTTGGAAAGACCAGAAAAGATAAATTCTACCACTTAGCAAAGGAAACGGgatATCGTTCACGTTCTTCCTTCAAGCTTATTCAACTGAACCGAAAATTCCAGTTCTTACAGAAAGCCAGGGCTCTGGTGGACTTGTGCGCTGCTCCGGGTGGTTGGTTACAGGTGGCGTCCAAGTTTATGCCTGTCTCCAGTCTTATTATTGGTGTCGACTTGGTCCCAATCAAATCTATCCCCAACGTGGTCGCCCTGACAGAGGACATCACCACAGAGAAATGCCGGCAGGCTCTGAGGAAGGAGCTCCAGACATGGAAGGTGGACGTGGTCCTAAACGATGGAGCTCCAAATGTTGGAGCCAACTGGGTGCATGATGCCTTCTCTCAGGCTCATCTGACCCTGATGGCTCTGAAGCTGGCGTGTGACTTCCTGGCCAAAGGGGGCACGTTTGTCACCAAGGTGTTCCGCTCCAAAGACTACCAGCCACTGCTGTGGATCTTCCAGCAGTTCTTCAAGAAGGTGCAGGCTACCAAGCCCCAGGCCTCCAGAAACGAGTCGGCTGAGATCTTCGTCATCTGCCAAGGCTACCTGGCCCCAGACAAAATTGACAACAAGTTCTTCGACCCCAAACATGCTTTCAAAGAGGTGGAGGTCCAAGCCAAGGCTATCAAAGACCTGGTCCCTCTGAAGAAaccaaagGCGGAGGGATACACAGATGGTGATCTGACCCTGTATCACACCTTCTCAGCGACCGCCTTCCTCAAGGCTGACAACCCTGTGGACTTCCTGAGCAAAGCCAACGAGATCAATTTTGACAACCCTGAGTTGGAGTCTCACGAGGCCACCTCTGACGAGGTCATAGAGTGTTGCCGTGACATCAAGGTTCTGGGCCGCAAGGAGCTCCGTCTGCTGCTGAACTGGAGGTCCAAGCTGAGGAGATACCTGGCTAAGAAGCTAAAGGATGAGGCCAAGCAGCTGGATGAGGACATCAAACTGAGTTCAGGTGAGGAGGCGAGCGAcgcagaggagaagaaagaagagaagaaagaggagaaggagaaaaagaAAATGACAGTGGCTGAAAAGAAGGAAGAAGAGGCCGAgttggaggaggaagagatggagcaGAAACTTGCCGAGCTGAAAGCCGAGGAGGTGGCAGAGCTGAGACGGAAGAAGAAGAAGcttctgaaggagaggaggaagcagagggagagggtggcACTGAAGATGGACCTGCCGGGAGTCTCCATCGCAGATGGCAACGACTCCTCAATGTTCTCCCTCGTTACCATTAACAAGGCCGCGGCTCTGTGTGAGATCACCAAGGGGGACATGAAGTTAGCTGATGCtatggtggaaggagaggaggacctaTACTTCTCTGACGACGGTGACAGTGACGAGGTCTCCCTGGTCTCTGACCTGGACGATGACGACTTGGATGAGATCatagagaaacagaaggagatgGCCAAGGACAAGGCCACCAAGAAAAAAGTGTCCTTCaatgtggagaaggaggaggaggaggaagaagaagggagTGGACTGATAGTGGAgctggagggaaaggaggagaagagagaccgTGAGACCAGCATGTGGTTCAGCAAGGACATCTTCGCTGAACTGGATCTGGACGGAGATGCAGCGAGCGAGCTGCGGCAGACACAGATGCTACAGAACAAGGACCCTACAGCCAAGGGGAAGAAGAGAAAAACCCCAGAGGAGCCTGATACGGCCCAGCCCGAGGGGGAAGAGGCGGGGCCTTCACAGGAAGCTGGGGCAGAGGGGGATAGCGACAGCTACTCTGATGAAGACAACAGCAGTGACGAGGACGATGAGAAGAGTATCGCTCAGATGAAGGCTAAAGGGTCTGGCGGTATCCAAGGAGACGAAGACGGCGACGACTTCCAGGTGGTGCCAGTGGAGAGCAccaGCAAGCGTGCTCGCATCATGAATGCAGAGGGTTTGGCCCTGGGCTGTCAGATCGCGACCTCCAAGAAGAGATCAAGGGACCTGGTTGACGGCTCCTTCCACAGATTTGCCAGCTCGGAGGACCAGTGCGAGGTGCCCGAGTGGTTTGTGGATGACGAGAAGAAACACAGGAATAAGCCTATCCCCGTCACcaaggagatggtggaggagtACAAGGCAAAATGGAAGGAGATCAACGCCAGGCCCATTAAAAGAGTGGCTGAGGCCAAGgccaggaagaagaggaggATGCTGAAGAAGATGGAGTCAGCCAAGAAGAAGGCGGAGGCCGTGGTCAACACAGTGGACATTGGTGAAAGGGAGAAGATGGCCCAGCTAAAGAGTATCTATAAGAAGGCGGGCCTTGgtaaggagaagagggaggtcaCGTACGTCGTGGCCAAGAAGGGCTCTGGTACCAAGAGGGTTCGTCGTCCGGGCGGTGTCAAGGGCCAGTTCAAAGTGGTGGACGGCCGCATGAAGAAGGACATGAGAGGCATGCAGAGGAAAGAGCAGCGTGAGAGAGGGGGCAagaaaggagggaaggggaaaggAGGGGGGGGCAAAGGAAAAGgcagaggtggtggaggaggaggatttAAGGGTGGAAGAGGAGGGATGAAGGGTGGAAAAGGACGTCCTGGCAGGAAATGAGTAAAAGAACACCGCTCTGTCCCCTCCTTTTGTTTTCGGAGGTTAAATTAATTTTCCCCTCCATTTTGTATCTGAGAGTTGTCATATAGGCAAGCTAAGATGGCTGCCACACTGCTGGTTCTGCTACAGTGGAATTGTGGGCAACAGAACTTCCCTGGTGTACTTTGAGACCCTCTACCGAAACAGTGACCGCCGTACTGAAAAGCATGATAAAACAATACAGGTATCCTCCAATCTTTTGGATAAATAAAAAGTGCTGTGTGTACATCTTTCTATGAGAGGATGACGTACTTGCCTTACATCCAGTGTTGACTGAAGCTGTTTCAGTGCACACCCTGAACCACTCTGTAATAAATGGTTTCGATCAAGATTTCACATGAATAGTAATGTTTATTAAAATACATGTGCTTTCCACAGGTGTTCTTTTAAATCTTGTAAATACTGATGATTTCACAATAAATGTCTTGATGAAACAAGTTAACCGAT

Function

symbol description
ftsj3 Predicted to enable rRNA (guanine) methyltransferase activity and rRNA (uridine-2'-O-)-methyltransferase activity. Predicted to be involved in maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and rRNA methylation. Predicted to act upstream of or within methylation and rRNA processing. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; immature eye; mesoderm; midbrain; and musculature system. Orthologous to human FTSJ3 (FtsJ RNA 2'-O-methyltransferase 3).

NR:

description
pre-rRNA processing protein FTSJ3

GO: NA

KEGG:

id description
K14857 SPB1, FTSJ3; AdoMet-dependent rRNA methyltransferase SPB1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938825.1 True 3292 mRNA 0.51 21 10087300 10096757

Neighbor

gene id symbol gene type direction distance location
LOC110533060 gnb4 coding upstream 38623 10012701 ~ 10048677 (+)
LOC110510920 LOC106574155 coding upstream 99605 9980527 ~ 9991542 (+)
LOC118937321 LOC106574127 coding upstream 122977 9956678 ~ 9964323 (+)
LOC118966382 LOC106574155 coding upstream 142218 9937165 ~ 9945082 (+)
LOC118937370 LOC106574127 coding upstream 162543 9917155 ~ 9924757 (+)
asb3 LOC106574148 coding downstream 186 10096943 ~ 10101637 (+)
lim2.2 LOC106574149 coding downstream 7412 10104169 ~ 10107888 (+)
gipc3 LOC106574151 coding downstream 43473 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 coding downstream 1336345 11433102 ~ 11514427 (+)
LOC110534079 LOC106574089 coding downstream 1567851 11664608 ~ 11666692 (+)
G8295 NA non-coding upstream 3633 10081168 ~ 10083667 (+)
G8253 NA non-coding upstream 34224 10051041 ~ 10053076 (+)
G8266 NA non-coding upstream 75233 10011850 ~ 10012067 (+)
G8265 NA non-coding upstream 76070 10011016 ~ 10011230 (+)
G8264 NA non-coding upstream 77950 10009020 ~ 10009350 (+)
G8304 NA non-coding downstream 22253 10119010 ~ 10134267 (+)
G8600 NA non-coding downstream 40577 10137334 ~ 10137566 (+)
G8651 NA non-coding downstream 123587 10220344 ~ 10222076 (+)
G8652 NA non-coding downstream 125500 10222257 ~ 10224611 (+)
G8695 NA non-coding downstream 203125 10299882 ~ 10301188 (+)
LOC118966784 LOC106574127 other upstream 627347 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 1831422 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1857065 8229189 ~ 8231566 (+)
G6807 NA other upstream 2050146 8036617 ~ 8037154 (+)
LOC110538561 LOC106574035 other downstream 3141856 13238613 ~ 13295452 (+)
G12410 NA other downstream 3532106 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 4095699 14192456 ~ 14214939 (+)

Expression


Co-expression Network