lim2.2 (LOC106574149)


Basic Information

Item Value
gene id lim2.2
gene name LOC106574149
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10104169 ~ 10107888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939156.1
ATTACCATCATTCACATGTTGCACTCGATCATTCCCTCTATTGTACAGGCAGACAATAAGGGCCATGGGTGGAGGGCATAAAAAGGATAGACGCACACTGACAGCCAACAACCCTGGACACAGACAGCCAACAACCCTGGACACAGACAGCCAACAACCCTGGACACAGACAGCCAACAACCCTGGACACAGACAGCAACCAACAGTGTGGTGCATTTAGGAGGACTGTGCTATCCCAGGCTTCTCCTTGATGCTGTACACTTTAGCAGGAGGGGGTACACTCTGTGGGGTGGCCGCCCTCGTGCTCCTCATCGTGTCCACGGCGACCGACTTCTGGATGCAGTACCGCTACTCGGGAGCGTCGGCCAATCAGGGCCTCTGGAGGTTTTGCATCAATCACAAGTGCCACGCCCACACCATCACTGTGGCCTTCTGGGATGCGACAAGGGCCTTCATGCTGCTGTCTGTGCTGAGCTGCTTTGCTGGCGTATTGCTGGGCCTGAGTGCCTTCGGCAACGGCACCAAGAGCAGGAGGGTTCGGACTGGGGGCTTCGCTCTGCTCCTGTCAGGTTTCCTAGCTCTGTTAGCTCTGGCCATCTACACTGGCGTGACGGTCAACTTCTTTGGCAAGCGCTTCCTTGATTGGCGCTTCTCCTGGTCCTACATCGTAGCTTGGGTGGCCATCATCTTATCTTTCGCTGCTGATACGTGGTTAGGATGGATCTGTCAGCAACAGACAGTGCAGGTGGGTTCCACCTCTGTGCCTATCAGAAGAACATTGCCGAACCGCCTCCTACCAATGTTCAAGAAAGCTAAATGGGAAGTAATCGTTTACCTGCACACTAAAGAAACAGCTACCAACCACTCGTCTTTACTATTGTCACTGATAGCGATGTGACAGCAGCTGTGGAAACAACATGTCTGGCAAAATCTACTGAACAGAATAAATAGGACTTTGACTCCAGCTTGG
>XM_021587979.2
TATTGTACAGGCAGACAATAAGGGCCATGGGTGGAGGGCATAAAAAGGATAGACGCACACTGACAGCCAACAACCCTGGACACAGACAGCCAACAACCCTGGACACAGACAGCCAACAACCCTGGACACAGACAGCCAACAACCCTGGACACAGACAGCAACCAACAGTTGTGGTGCATTTAGGAGGACTGTGCTATCCCAGGCTTCTCCTTGATGCTGTACACTTTAGCAGGAGGGGGTACACTCTGTGGGGTGGCCGCCCTCGTGCTCCTCATCGTGTCCACGGCGACCGACTTCTGGATGCAGTACCGCTACTCGGGAGCGTCGGCCAATCAGGGCCTCTGGAGGTTTTGCATCAATCACAAGTGCCACGCCCACACCATCACTGTGGCCTTCTGGGATGCGACAAGGGCCTTCATGCTGCTGTCTGTGCTGAGCTGCTTTGCTGGCGTATTGCTGGGCCTGAGTGCCTTCGGCAACGGCACCAAGAGCAGGAGGGTTCGGACTGGGGGCTTCGCTCTGCTCCTGTCAGGTTTCCTAGCTCTGTTAGCTCTGGCCATCTACACTGGCGTGACGGTCAACTTCTTTGGCAAGCGCTTCCTTGATTGGCGCTTCTCCTGGTCCTACATCGTAGCTTGGGTGGCCATCATCTTATCTTTCGCTGCTGGTGGGTTCCACCTCTGTGCCTATCAGAAGAACATTGCCGAACCGCCTCCTACCAATGTTCAAGAAAGCTAAATGGGAAGTAATCGTTTACCTGCACACTAAAGAAACAGCTACCAACCACTCGTCTTTACTATTGTCACTGATAGCGATGTGACAGCAGCTGTGGAAACAACATGTCTGGCAAAATCTACTGAACAGAATAAATAGGACTTTGACTCCAGCTTGGTCTCTAGTTCACTGCTT

Function

NR:

description
lens fiber membrane intrinsic protein-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939156.1 False 970 mRNA 0.53 6 10104169 10107871
XM_021587979.2 True 909 mRNA 0.53 5 10104207 10107888

Neighbor

gene id symbol gene type direction distance location
asb3 LOC106574148 coding upstream 2532 10096943 ~ 10101637 (+)
ftsj3 ftsj3 coding upstream 7412 10087300 ~ 10096757 (+)
LOC110533060 gnb4 coding upstream 55492 10012701 ~ 10048677 (+)
LOC110510920 LOC106574155 coding upstream 116474 9980527 ~ 9991542 (+)
LOC118937321 LOC106574127 coding upstream 139846 9956678 ~ 9964323 (+)
gipc3 LOC106574151 coding downstream 32342 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 coding downstream 1325214 11433102 ~ 11514427 (+)
LOC110534079 LOC106574089 coding downstream 1556720 11664608 ~ 11666692 (+)
ccdc50 ccd50 coding downstream 1737831 11845719 ~ 11879266 (+)
LOC110534540 LOC106574080 coding downstream 1795803 11903691 ~ 11906713 (+)
G8295 NA non-coding upstream 20502 10081168 ~ 10083667 (+)
G8253 NA non-coding upstream 51093 10051041 ~ 10053076 (+)
G8266 NA non-coding upstream 92102 10011850 ~ 10012067 (+)
G8265 NA non-coding upstream 92939 10011016 ~ 10011230 (+)
G8264 NA non-coding upstream 94819 10009020 ~ 10009350 (+)
G8304 NA non-coding downstream 11122 10119010 ~ 10134267 (+)
G8600 NA non-coding downstream 29446 10137334 ~ 10137566 (+)
G8651 NA non-coding downstream 112456 10220344 ~ 10222076 (+)
G8652 NA non-coding downstream 114369 10222257 ~ 10224611 (+)
G8695 NA non-coding downstream 191994 10299882 ~ 10301188 (+)
LOC118966784 LOC106574127 other upstream 644216 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 1848291 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1873934 8229189 ~ 8231566 (+)
G6807 NA other upstream 2067015 8036617 ~ 8037154 (+)
LOC110538561 LOC106574035 other downstream 3130725 13238613 ~ 13295452 (+)
G12410 NA other downstream 3520975 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 4084568 14192456 ~ 14214939 (+)

Expression


Co-expression Network