gipc3 (LOC106574151)


Basic Information

Item Value
gene id gipc3
gene name LOC106574151
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10140230 ~ 10162948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618308.2
GATGCTCAGCATCTGGGTGTTGGGTTTCCACCTGGCCGAGCAGGCCTCCTTTGGCTGCTGTTACCTGGCTACTCTCATCACTAATTCAGCAGCACCTAGGGTCCCAACTCTCTCTCTGGCCAGCTAGGGCAGCATACACCAGGACTCACGGAGGACCACCAACCCAGAGCTGGGGCCGATGCAGAACGGAGAAGAGATGAGCCCGCTAGCGCAGGACAGCAACAAGGCTGGAGGGCCggcttcagaggaagaggagaagagtcaGGCACATGGGGGTGTGGAGCCCTCCGCTCCGCCGCTGCCCCCCTCAGACCCACCTCCGTCTGGGCCGCCTGAGTACCCAAGGCCCAGGCTCGTCTTCCACACCCAGTTGGCACATGGCAGCCCTACAGGCCGCATCCATGGCTTCACCAATGTCAAGGAGTTGTATGCCAAGATCGCTGAGGTGTTTCATATCTCTCCCTCGGAGATCCTTTTCTGCACTCTGAACTCCCACAAGGTGGATATGCAGAAGCTGTTAGGTGGTCAGATCGGCCTGGAGGACTTCATCTTCGCCCACGTCAGGGGCGAGACCAAAGAGATGGAGGTCACCAAGACGGAGGACGCCCTCGGGCTGACCATCACTGACAACGGAGCAGGGTACGCTTTCATTAAGAGGATAAAGGAAGAGAGCACCATTGACCAGCTCAAGACTGTATGCGTGGGCGATCACATTGAGGCCATCAATGACCAGAGCATTGTCGGTTGTCGGCACTATGAAGTAGCTAAGATGCTAAAGGAGCAACCAAGGGGAACACCCTTCACACTACGCTTGGTGGGGCCCAAGAAAGCCTTTGaTATGATCGGCATGAGGACCAGGGCACCCAAGTCGAGCGAGGGTAAGATGGTGAATGGGAAAGAGACCCTGCGTCTGCGCTCCAAGGGCTCAGCTACAGTCCAGGAAGTGCCGAATGAGTTTGAGGAGAGAGCCACCAAGAAAGTGGATGATCTACTGGAGAGCTACATGGGTATTCGAGACCTCGACTTAGCGACCACCATCGTGGAGGCTGGAAAAGACAAGATGAACCCAGATGATTTTGCTGAGGCTATGGATTCAGTGCTGGGGGACTTTGCCTTCCCAGATGTCTTCTTGTTTGATGTGTGGGGTGCCATTGGAGATGTGAAGGATGACAGAATGTAGAGGTGTCAGTCAGTTATTACTGTTTTCATGTCtttcaaacatttctattttACAATTGTCATCTCAATGGCCGTATTAGATGGTTAACGCAGGCCTACTCAGCCATTCTTCTCCAAACAATTTTCTATGTAATTTCTATTACTTTGGTATGAAACAAGTTCCTCCCGAATACGTTAAGTTTAGAATGACATTTCATAAGTGGGTTACGTAATCTTTGCAGTGGGCATTGTGTTGATTGTGTTCTTGGATACTGCTCAGGGCTCACCATACTAGAGGGAAATATCCCTGTTATGTCATTAATGTATACAAAACCCAATCACTGTTGTCCATGGGCACATGCATgtgaacatactgtatatttatacaGACAATATAAGAAGTTATCGGCTATCCATCTCTGAAACCAGGAAGTGAGTTAAGAGCTTGTTTGTTCCAGATACAGAGAGACCAGGATAAGACCAGAGATCAAAGAGTTGACCCCTGGGCGGCACCATTAGTACGGCGTTTCATCTTCCACCAACATGGTTGAGAAACCACCATGGTGGCCATTTTGAATCAAAGAACTCCCCATACATTAGTTATGCAATAGTGAGCTGATTGATTTAGCCTTCTTAACAAAGGAGGCTGGAGTGTTAAATTGGGTATTTGGCCAAGACATCAAGGTGCGTCCTTATACAATATGTATTTGCATGGTCATTTCAAATACCCAGAGTGATGAAAGAGTTCAGTATAATGCCTCATTTTGAGAACAGCACCCCCATTACACAGTATCCTCACCAGTGTTGTCATTAATTTCATCCAAATGGATGAGTGCCCTGTACAGACTCACCCAGCAACAGGTAACTTAGAAGTCAGCAGAGTGATCTTCTTGACATCTGAGAAAGAACAGAGGTCAAGTGTACCTTTTTTTCAGAAATGACCCTTGGAAATATCTCCAAAATTGATACTGATATGCTAGAATTCCCTAAAGTTGTTCTACGACCATAACAAGCATTAAAATGTCCTCTTATAGGAACCACAACCCAGAAGTTTCCTACGGTGAAGGAACTTGAGTAAACATATTTTGAATACAAAGGCTACTCTGACTCACAACCAGGAAATTAGTTGTGCAGACCTTAgaatacaagcatttcgctacattcgcaataacatctgctaaccatgtgtatgtgaccaaaaaaatgtgatttatgatttgatttgaaatgggaAAAACAACATGATTTCAAGATGAATGGTGAAGAAAGTTGGAAAAAGATGTTTGAAACTTCCTGTTTAATTGCAGAGTATTGTTTGCCTGAAAAAGGAAAGTCTTCATATTCTTTATGCGTTATCATGTGCTCACATGTTTTGTTCTCAAAGGCTTTTCATTTCAAGTATTCATAATGCAGGAATTTATTCATCAAATACGACTTTTATATTATGATTCAGTGTTGTTTTAGAAACAGAATGTAAATAAGAGTTATTTGAATTGTCAAATATGTGtgaaaagttgagaaataaatatgttttgaatcataaatgtataaaaacaaattACATGTAATCTTGACTTGACCAGAACCTCAGCATAATGTTGTGTGGTAGACTTTATGTCTGATGTGTATTGATATATCACTCTATTGAGACCTGAAAATATAAGGCATATTTCA
>TU10501
CGGCCATCCACACTGCAACCTGTTGCTGTCTCAATGCCATGACAGATGACAGAAAGATATGGATGATCGAAGATCCTTTTCTGCACTCTGAACTCCCACAAGGTGGATATGCAGAAGCTGTTAGGTGGTCAGATCGGCCTGGAGGACTTCATCTTCGCCCACGTCAGGGGCGAGACCAAAGAGATGGAGGTCACCAAGACGGAGGACGCCCTCGGGCTGACCATCACTGACAACGGAGCAGGGTACGCTTTCATTAAGAGGATAAAGGAAGAGAGCACCATTGACCAGCTCAAGACTGTATGCGTGGGCGATCACATTGAGGCCATCAATGACCAGAGCATTGTCGGTTGTCGGCACTATGAAGTAGCTAAGATGCTAAAGGAGCAACCAAGGGGAACACCCTTCACACTACGCTTGGTGGGGCCCAAGAAAGCCTTTGaTATGATCGGCATGAGGACCAGGGCACCCAAGTCGAGCGAGGGTAAGATGGTGAATGGGAAAGAGACCCTGCGTCTGCGCTCCAAGGGCTCAGCTACAGTCCAGGAAGTGCCGAATGAGTTTGAGGAGAGAGCCACCAAGAAAGTGGATGATCTACTGGAGAGCTACATGGGTATTCGAGACCTCGACTTAGCGACCACCATCGTGGAGGCTGGAAAAGACAAGATGAACCCAGATGATTTTGCTGAGGCTATGGATTCAGTGCTGGGGGACTTTGCCTTCCCAGATGTCTTCTTGTTTGATGTGTGGGGTGCCATTGGAGATGTGAAGGATGA

Function

NR:

description
PDZ domain-containing protein GIPC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618308.2 False 2832 mRNA 0.44 6 10140230 10162948
TU10501 True 773 TUCP 0.48 6 10141244 10161286

Neighbor

gene id symbol gene type direction distance location
lim2.2 LOC106574149 coding upstream 32342 10104169 ~ 10107888 (+)
asb3 LOC106574148 coding upstream 38593 10096943 ~ 10101637 (+)
ftsj3 ftsj3 coding upstream 43473 10087300 ~ 10096757 (+)
LOC110533060 gnb4 coding upstream 91553 10012701 ~ 10048677 (+)
LOC110510920 LOC106574155 coding upstream 152535 9980527 ~ 9991542 (+)
LOC110523899 LOC106574090 coding downstream 1270154 11433102 ~ 11514427 (+)
LOC110534079 LOC106574089 coding downstream 1501660 11664608 ~ 11666692 (+)
ccdc50 ccd50 coding downstream 1682771 11845719 ~ 11879266 (+)
LOC110534540 LOC106574080 coding downstream 1740743 11903691 ~ 11906713 (+)
LOC110534688 LOC106573995 coding downstream 1759628 11922576 ~ 12025076 (+)
G8600 NA non-coding upstream 2664 10137334 ~ 10137566 (+)
G8304 NA non-coding upstream 5963 10119010 ~ 10134267 (+)
G8295 NA non-coding upstream 56563 10081168 ~ 10083667 (+)
G8253 NA non-coding upstream 87154 10051041 ~ 10053076 (+)
G8266 NA non-coding upstream 128163 10011850 ~ 10012067 (+)
G8651 NA non-coding downstream 57396 10220344 ~ 10222076 (+)
G8652 NA non-coding downstream 59309 10222257 ~ 10224611 (+)
G8695 NA non-coding downstream 136934 10299882 ~ 10301188 (+)
G8764 NA non-coding downstream 254395 10417343 ~ 10420536 (+)
G8846 NA non-coding downstream 398196 10561144 ~ 10562327 (+)
LOC118966784 LOC106574127 other upstream 680277 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 1884352 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1909995 8229189 ~ 8231566 (+)
G6807 NA other upstream 2103076 8036617 ~ 8037154 (+)
LOC110538561 LOC106574035 other downstream 3075665 13238613 ~ 13295452 (+)
G12410 NA other downstream 3465915 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 4029508 14192456 ~ 14214939 (+)
G13380 NA other downstream 4516402 14679350 ~ 14679578 (+)

Expression


Co-expression Network