LOC110533913 (LOC106574093)


Basic Information

Item Value
gene id LOC110533913
gene name LOC106574093
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11313634 ~ 11411835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940651.1
TGAGCTGAAACGTCGTGAAGGAGGCGTGAGGCCTAGCTCTCCTGTATGCAACCAGCTAGCTAAAGCTCTAAAAGATAATCGATCGTGTGTGGATTTTATAAAACGTGAAACATCGAttgagtaaaataaagaaaaggaACAtattttgctgcaggagTTCTACCTGCCACCATGTCGCTGGAAGCACCAGACATGGGCCAAGATCCTGCACCAGACATGTCCCCAGAACTAGCTGCAGATTCCCCTCCCGCCCCAGAATTAGCCCCTGAGCTAACACCAGATACAGCCCCAGAACTAGCTGCAGATTCAGCTCCGGTCCCAGTAATGAATCCAGGTTGTAAGATCATGACATTCCGGCCCACCATGGAGGAATTCAAGGACTTTGCCAAATACATTGCCTACATGGAGACTCAAGGAGCACACCGCGCAGGCCTGGCGAAGGTGATTCCCCCCAAGGGCTGGAAGCCACGGAAGTCATATGACGTCATTGAGGAGATGACGATCCCTGCTCCCATCATGCAGGTGGTGACGGGCCAGTCAGGCCTCTTTACCCAGTACAACATCCAGAAAAAGTCCATGACTGTGGGGGAGTACCGCCAACTGGCCAACAGCAGAAAGTACTGTACTCCCCGACACAAGGACTTTGACGACCTGGAGAGGAAGTACTGGAAGAACCTCACCTTTGTGTCTCCAATCTACGGGGCTGACGTCAGCGGCTCCATCTATGACTCCgagATCAGTGAGTGGAACATCGGCCACCTGAACACGCTGCTGGACATGGTGGAGCAGGAGTGTGGCATCGTGATCGAGGGGGTGAACACTCCCTACCTGTACTTTGGCATGTGGAAGACCACCTTCGCCTGGCACACAGAGGACATGGATCTCTACAGTATCAACTACCTCCACTTTGGAGAGCCCAAGTCCTGGTATGCCATCCCACCTGAGCACGGGAAAAGGCTGGAGAGGCTGGCTCAAGGTTTCTTCCCAGGCAGTTCCCAGGGCTGTGACGCCTTTCTCCGCCACAAGATGACTCTCATCTCCCCGTCCATACTGAAGAAGTACAGCATCCCCTTCGACAGGATCACTCAGGAAGAAGGCGAGTTTATGGTCACCTTTCCTTATGGCTATCACGCTGGTTTCAACCACGGCTTCAACTGCGCAGAGTCCACCAACTTTGCCACCCTGCGTTGGATTGACTACGGCAAGATGGCAACACAGTGTACATGTCGTAAGGACATGGTGAAGATCTCCATGGACGTGTTTGTCCGCTGCCTGCAGCCGGAGCGCTACGTCCAGTGGAAACAGGGCAAGGACGGCATGGTGCTGGACCACCAGCGACCCACCACCCTGACCAGCCCTGAGCTGGAGCACTGGAGGGCCAACCGGGTCACCTATCGCCAGAAACTGCTTCAGAGAGCTTTACAGAAGAAGGAGCAGCTGCGGCGGCTGAAACTGGAGGAGGTCAAGGTTCTGGCGGAGGAAGGCATTGAGATGGATGCCGCCGAGTACCAACGTCAGGTGGAGGAGCGAGAGGCCCAGCGGcgccaggagagggaggagaggatggccCGGGAGGCGTTTCAGACCCTGGAGGCCATGGAGAGAGAGGACCAGGAGAGGGAAGAACGGGAGAGGCAGGACCGAGAGAGGCAGGAAGCCGTTGCCGCCAAGGCCACAAGAGTACACGACCCCCAGGCAGACCCACAGCACTTGATGGCGAATggagagaagaaaaagaagaagaagaagaagaagaagaagaagcaacaACCTACCCTGCCGCTGGCCCCTATAAATTCCTTCCAAGCAGCATTTGAGAAGTTTGCCACATTCAACATGCCCCAGACACCAAAGGAGCCCCAAGGCAGCAATGACACGGAAATACCAGCAGAGGGCAGGCTTGATGTGAAAGGCATGCAGCAGTCATCCTACTACTCTAAGCAGTTGAAGATTAAGATGGAGGTGAAGAAGAGTCGCCGGCACCCCCTCAGCAAGCCGCCTATGCGCTCTCCGCTGTCCATCGTCAAGCAGGAAATGTCCAGCGATGAAGAGCTGTTCTCCCCTTTACCACTGGATGGCCATGTGAAGAAGGCGGGCCACTTGTGGCAGAACCGCACTCCTAACATCCTGGCTGAGAAGAGTTTCAACGCGGCCGTGGCCACCCTGGAACCCTACTGTGCCGTATGCACTCTGTTCTGCCCATACACCCAGCCCCAGAAGGACTCTCTGTACCTGTCTGACAGCCCCAGTGCCCCCAACCACCCCCACACTCCCGGCTGCGGCAGCCGCACCCACCCGCTGGTCCCAGAGATGTGCTTCAGCGCCGGGCCGGACAACACAGAGCCGCTGCCCTCCAACTCCCACACGGGAGAAGACTGCACCAGCCCGCTGATCTCCTGCTCCTTCTGCAGCCTGCAGGTCCACTCCAgttgTTATGGTGTTAGTCTGGACACGGTACACAATCAGTCCTGGATGTGTTCGCGATGTACAGCGCTCGCCTGGACAGCGGACTGCTGTCTGTGTAACCTACGGGGAGGGGCGCTGAAGATGACCACAGACAACCGgtGGGTCCATGTGATTTGTGCCATCGCCGTGGCGGAGGCTCGCTTCGTCAACGCCATCGCAAGGGAGCCGGTGGACATCAGCGCCATCCCCGATAGCAGGAAGAGTCTGAAGTGTGTATACTGCCACAAGAACACCAAGCAGATGTGCGGGGCGTGTATCCAGTGTTCCCAGGACAACTGCTCCACCTCCTTCCACGTCACCTGCGCCCACATCGCCGGTGTGCTCATGAAGCCAGCCGATTGGCCTTACGTGGTGTCTGTCACCTGCCACAAGCATAAGAAGACCAATCACAAGgcaaGGGTGGGGCCAAGGGGGGAGTTTTCTCTTGGTCAGAAGGTAATTGGTCGGAACATCGATGGCTGGTTCTACCCCTGCACCATCATTGGCATGACCTCACAAACCTTCTACGAGTTCAACTTTGATGACGGCTCCTACTGTGACAACATCTTCCCCGAGAACGTTGTgagtcACGACTGTCTTCGTAACGGTCCCCCAGAGACCGGCGAGCTGATGTTGGTCCACAACATGGAGGGCCAGGCGCTCAACGCCTCCTACGTCAAGGATCACGTGCACAAGTACTACCAGGTGGAGTTCCAAGATGAGTCCCAGCTGTTATTGAAGCAAACAGAGATCCATTCGCTGGAGCAGGACCTGCCCAAGAGGGTCTGCACTCGCCTGGCAATACCAACCCAGGAAGCCCTTCTGTCAGGAGACGAACCACAGGCAGCCAAGAGGCCTCGCCTCCCCGCCCCTCACCCCACACCTCAAGCCCCCATGGACCCCGGATGCCAACCCCCAGCTACAGGCCCTGTACCTCACAGTATTACACCTCACACACCCAGCCATGCTCCTGGTCCCTCCAACACTGATATCAGCGCCCTTACCCTCACCCAGGCTCTGGCAATACCCATCTCCGAGCCCACCCTCACCCCAATGCCAACTCTCACTGATCCTCTCCCAGCCCCGTCGGCCCTAGCCGCCCCTCTGCTGCCCCTCTCCCCAGCCGTGCCCTTCCAGGACCAGGGTGAAGCTTACACAGCCAGGTCCGTGCCCTTCCAGGACCAGGGTAAAGCTTACACAGCCAGGTCCATGCCCTTCCAGGACCAGGGTGAAGCTTACACAGCCAGGTCCGTGCCCTTCCAGGACCAGGGTGAAGGATACACGCCCAGCTCCAGCTACGTGTCCTACATGGAGACGCTGCTCAATACACACTTCCCCCCTCAGGAAGATGGCCCCGGGCCCCTGTTTTAATGAGACGCACCACTCTGCCGTGATAGCTAGGCTAACAGGAGCTAAGCTAATGCTAGGAAAGATAATGTAATCTATGCTAAAGGAGGCTAAGTGATAGACAGTAGCATCTGTTACAGAATGCAGATAAAGCACTCCTCAGTtgcatgtctttttttttttagggtgggTGGGGTGTGGGGGGGGTTCTCACTGCTGTGGTGTGGTTATGGGCTGTTCCTAGAACTGCAGCGCAAGAGGAGGCTTCTTTTCCCCTTCTTCTGTGTTGGTCTGCCATTTGTGCAAAACGCAAAATGTATAGACACGAATAGACTCACAAGCATCATCACCTCACCTCTTTCTATCCAGTTATTTACCCGCTTTTACAGAACGGTGACGTCAGCTTTTTTGTGTTCATCTATGAAACCAGCAAGAACTATTTTTTAATAGAAGCTATACCAACTGCTtacaatgaaacagaacagcatatGGACAGAATATTTGTGTACAGTTTCAATAATGTATTTTTGTTTGTGAGAGGTCCTGGGGAAAGGGTGGAGATGTATTACAGGGGGGTTGACAAGTATTTAAATGTCTTATTCATATATTGATATAAAATCCTTGTACAAAGATAAAACATTTTGTTGGGGGGAAATGCAACCGTGGTAGTTACACTTTATTGTAATCTTGTCTGCAGAACCATTGAATTTTGTGAAGATGTGTTGCAGTAGTTCTGAATGTGTCCCTGTATCGAACAAACCCAAAAACCATCATGTTCACATTGCTCACGTTTTCCAACTCCAGAACTTCTCTGGGCTTTGTTTTGTAGCATTCTTCGTAAAAAATCAATGTTACTATTCGACGTTGTCTGTTCGTATGACTATTCTTTCTATGTTTATTTTGTGAATATATTAACCTCACGAGGTGATCCGAGAAAATGCTTTGATTATGAAATTATTATTCTTTTTTGAGATTTTAGAGAGAGGTAAATTGAATTTCTACTCCAGTAAACAAAACCTGCATTTTCAAATGGTATGTTAACTATCTTTATAGAGGTGCTATCCTGGATGACTGGGGAAGCATGTTTCTCATACCCACAGTCACATTATACATAGTGCAAGCCTTTGTGTGTGAATCAAATCTGTTAATGTCATACTAGCCATGTAATTGAGCTGTTATTACAATAGAATGTCATGACAGATCAATGTTCCTATGTGGAAACCTACTGTGAAGAGGCTTTATTTCATAGGAATTAAACTGAGTTGTTATAGCCA
>TU12042
TCACTGCTGTGGTGTGGTTATGGGCTGTTCCTAGAACTGCAGCGCAAGAGGAGGCTTCTTTTCCCCTTCTTCTGTGTTGGTCTGCCATTTGTGCAAAACGCAAAATGTATAGACACGAATAGACTCACAAGCATCATCACCTCACCTCTTTCTATCCAGTTATTTACCCGCTTTTACAGAACGGTGACGTCAGCTTTTTTGTGTTCATCTATGAAACCAGCAAGAACTATTTTTTAATAGAAGCTATACCAACTGCTtacaatgaaacagaacagcatatGGACAGAATATTTGTGTACAGTTTCAATAATGTATTTTTGTTTGTGAGAGGTCCTGGGGAAAGGGTGGAGATGTATTACAGGGGGGTTGACAAGTATTTAAATGTCTTATTCATATATTGATATAAAATCCTTGTACAAAGATAAAACATTTTGTTGGGGGGAAATGCAACCGTGGTAGTTACACTTTATTGTAATCTTGTCTGCAGAACCATTGAATTTTGTGAAGATGTGTTGCAGTAGTTCTGAATGTGTCCCTGTATCGAACAAACCCAAAAACCATCATGTTCACATTGCTCACGTTTTCCAACTCCAGAACTTCTCTGGGCTTTGTTTTGTAGCATTCTTCGTAAAAAATCAATGTTACTATTCGACGTTGTCTGTTCGTATGACTATTCTTTCTATGTTTATTTTGTGAATATATTAACCTCACGAGGTGATCCGAGAAAATGCTTTGATTATGAAATTATTATTCTTTTTTGAGATTTTAGAGAGAGGTAAATTGAATTTCTACTCCAGTAAACAAAACCTGCATTTTCAAATGGTATGTTAACTATCTTTATAGAGGTGCTATCCTGGATGACTGGGGAAGCATGTTTCTCATACCCACAGTCACATTATACATAGTGCAAGCCTTTGTGTGTGAATCAAATCTGTTAATGTCATACTAGCCATGTAATTGAGCTGTTATTACAATAGAATGTCATGACAGATCAATGTTCCTATGTGGAAACCTACTGTGAAGAGGCTTTATTTCATAGGAATTAAACTGAGTTGTTATAGCCAGCTTGTGTAGTGTTCCTTTCCTTTTGCATGTTTATaacccatctcttctcctccgcCGTCTGTCTGTCCTTGCTCATCCTGCACACCACTCATTCCCTGCAGGCCAATGCGGTTGGAGCTCAGCGGAGGTATAACTACAGCTGTTACTGCTCCCCTGTTCTCTGGCAACAACACAAGCAGAATCCCAAAGAGGCTCAAGTTTTAAAGGAGGGGAAAGTGTTCCAAAGCCCGTAGGGG
>TU12040
TCACTGCTGTGGTGTGGTTATGGGCTGTTCCTAGAACTGCAGCGCAAGAGGAGGCTTCTTTTCCCCTTCTTCTGTGTTGGTCTGCCATTTGTGCAAAACGCAAAATGTATAGACACGAATAGACTCACAAGCATCATCACCTCACCTCTTTCTATCCAGTTATTTACCCGCTTTTACAGAACGGTGACGTCAGCTTTTTTGTGTTCATCTATGAAACCAGCAAGAACTATTTTTTAATAGAAGCTATACCAACTGCTtacaatgaaacagaacagcatatGGACAGAATATTTGTGTACAGTTTCAATAATGTATTTTTGTTTGTGAGAGGTCCTGGGGAAAGGGTGGAGATGTATTACAGGGGGGTTGACAAGTATTTAAATGTCTTATTCATATATTGATATAAAATCCTTGTACAAAGATAAAACATTTTGTTGGGGGGAAATGCAACCGTGGTAGTTACACTTTATTGTAATCTTGTCTGCAGAACCATTGAATTTTGTGAAGATGTGTTGCAGTAGTTCTGAATGTGTCCCTGTATCGAACAAACCCAAAAACCATCATGTTCACATTGCTCACGTTTTCCAACTCCAGAACTTCTCTGGGCTTTGTTTTGTAGCATTCTTCGTAAAAAATCAATGTTACTATTCGACGTTGTCTGTTCGTATGACTATTCTTTCTATGTTTATTTTGTGAATATATTAACCTCACGAGGTGATCCGAGAAAATGCTTTGATTATGAAATTATTATTCTTTTTTGAGATTTTAGAGAGAGGTAAATTGAATTTCTACTCCAGTAAACAAAACCTGCATTTTCAAATGGTATGTTAACTATCTTTATAGAGGTGCTATCCTGGATGACTGGGGAAGCATGTTTCTCATACCCACAGTCACATTATACATAGTGCAAGCCTTTGTGTGTGAATCAAATCTGTTAATGTCATACTAGCCATGTAATTGAGCTGTTATTACAATAGAATGTCATGACAGATCAATGTTCCTATGTGGAAACCTACTGTGAAGAGGCTTTATTTCATAGGAATTAAACTGAGTTGTTATAGCC
>TU12041
ATTATTATTCTTTTTTGAGATTTTAGAGAGAGGTAAATTGAATTTCTACTCCAGTAAACAAAACCTGCATTTTCAAATGGTATGTTAACTATCTTTATAGAGGTGCTATCCTGGATGACTGGGGAAGCATGTTTCTCATACCCACAGTCACATTATACATAGTGCAAGCCTTTGTGTGTGAATCAAATCTGTTAATGTCATACTAGCCATGTAATTGAGCTGTTATTACAATAGAATGTCATGACAGATCAATGTTCCTATGTGGAAACCTACTGTGAAGAGGCTTTATTTCATAGGAATTAAACTGAGTTGTTATAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940651.1 False 5066 mRNA 0.52 22 11313871 11411835
TU12042 False 1301 lncRNA 0.28 1 11313634 11314934
TU12040 False 1063 lncRNA 0.42 1 11313872 11314934
TU12041 True 320 lncRNA 0.40 1 11313872 11314191

Neighbor

gene id symbol gene type direction distance location
LOC118966751 NA coding downstream 336709 10977107 ~ 10977162 (-)
LOC110522842 LOC106574153 coding downstream 691292 10220327 ~ 10622579 (-)
LOC110533608 LOC106574152 coding downstream 1132579 10166558 ~ 10181292 (-)
LOC110533496 LOC106574150 coding downstream 1185623 10110040 ~ 10128248 (-)
LOC110533192 LOC106574144 coding downstream 1234297 10053841 ~ 10079574 (-)
LOC110533997 LOC106574092 coding upstream 990 11412825 ~ 11425966 (-)
LOC110524396 LOC106574087 coding upstream 387580 11799415 ~ 11802397 (-)
LOC110534151 LOC106574088 coding upstream 398873 11810708 ~ 11819081 (-)
uts2d uts2b coding upstream 420854 11832689 ~ 11834717 (-)
LOC110534884 LOC106573997 coding upstream 634266 12042943 ~ 12052746 (-)
G10075 NA non-coding downstream 39202 11274363 ~ 11274669 (-)
G10066 NA non-coding downstream 49445 11264200 ~ 11264426 (-)
G10061 NA non-coding downstream 61985 11251660 ~ 11251886 (-)
G10056 NA non-coding downstream 81963 11231697 ~ 11231908 (-)
G10052 NA non-coding downstream 87247 11226368 ~ 11226624 (-)
G10149 NA non-coding upstream 17368 11429203 ~ 11429502 (-)
G10211 NA non-coding upstream 106901 11518736 ~ 11519032 (-)
G10225 NA non-coding upstream 123063 11534898 ~ 11535356 (-)
G10228 NA non-coding upstream 126062 11537897 ~ 11538116 (-)
G10233 NA non-coding upstream 128089 11539924 ~ 11540132 (-)
G8455 LOC106574127 other downstream 1723285 9567941 ~ 9590586 (-)
G7965 NA other downstream 2130837 9181455 ~ 9194911 (-)
G7985 NA other downstream 2159924 9153270 ~ 9153947 (-)
LOC110529747 tsc22d2 other downstream 2938307 8330314 ~ 8419050 (-)
G7184 LOC100135997 other downstream 3129938 8164276 ~ 8183933 (-)
G10263 NA other upstream 150902 11562737 ~ 11563125 (-)
G10343 NA other upstream 233245 11645080 ~ 11645703 (-)
G10776 NA other upstream 443875 11855710 ~ 11856390 (-)
G10792 NA other upstream 461270 11873105 ~ 11873891 (-)
LOC118938491 NA other upstream 775069 12186901 ~ 12205391 (-)
G10116 NA non-coding upstream 42271 11357205 ~ 11358900 (-)
G10132 NA non-coding upstream 83742 11398676 ~ 11399041 (-)

Expression


Co-expression Network