LOC110534540 (LOC106574080)


Basic Information

Item Value
gene id LOC110534540
gene name LOC106574080
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11903691 ~ 11906713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619544.2
CCAAGAGTGGATGCACTACTCACTGAACACAGGCGCAACGCTGAGAGTACGAGATAACGGTCCACAACGCGGCAGGAATTAGACTTTAACGGAGTTCGGTTTGCTTCAATAGATTTAACAGACATTGAGAATCAAGGACATTTCAACAATTTAAAGATTAGATTTTCCACTGTTCATGTATTTTGTCTTTTTTCATCAACTCCCATTTTAGTAGCCTTTATTATCAAACATCATCTCTACCATACCATATCATCGGAATACCATGACGAGCTCTGCGGTTCAACTTCCCGGTTATGCTCTTGCTTTGATCGGTCTTGTTGGCTCAGTGATTGCCACCACTATGGTGGAGTGGAAAAGGCACTCTTACACAGAGAGCACGGTAACATCAAAGGAAACGTACCTGGGCTTATGGATGTCATGCACCGTCGACGCCACAAGACACACGATGTGCGTCAATTACAAGTCACTCTTTCACCTGCCAGCGGAGATTCTGACCACCCGAGTGGTGATGATCCTCAGTGTCCTGTTGTCAGCCATTGGGGTGCTGGTAGCCACGCTGGGGATGAGATGCACTCGGTGCCTGGAGGAGGATGAAAAGCAGAAGGATAGAGTAGCCATTGTTGGAGGATTCCTCTTCATCATTGCAGGTGTTCTGGCCATATCGGTAACCTCCTGGTTTGCCAACGCCATCATCCGGTCCTTTGTATTCTCAGACTCACCTACTTCCTTACATAACAGGTTTGAGTTTGGCAACGCTGTGCTGGTGAGCTGGGGTGCAGGTATCTGCTCTGTGGTGGGCGGATTTCTCCTGGGCTGCAGGTATCTGTGGAGTTGTCCCCAGGGCTCACGCTCAGTCTCATCCTTCACCCAACCCAAAGTCATTCCTGGCACCAGGCCTGGCACCCACTATGTTTAATGGGCCACACTATGCCTAGAGGACGCCCTAAGAAGCTCAATTCGTTGAGGCTTAAACCAGAGAGCCTACTACTCACACTGAAGGACTACAGTAGAGCAGAATATGTGAAGTTACTCAAGTACTCTACTGTGTGTGACTCGCCTACATTATGATTGTGAGAGTTCATTTGGGAGGTCTGTGTGCTCCATGAAAGTATTTTTCTAATGAATTGTGTTTGGATGTGTGAAGACGGTTGGCTGTGGTCATGATGTGCAACACCTGCCATATCTCTGTTTTCAACCTCATGTCAAGTGCCTCCACTAAAGGAATGTTCAAATATCGCCAATGTAGCTACCATTTCATTATATACCATCACCAATGTACAGTGTTGCAGAGTAGTAATCCTATGACTCTCAAAATGTACAGatgggaataagcaggaaatctggaaTCCCCTAACAAGGGCTTCTGGGAAAGCTAGGAATTCTGGTAATGTTACTGGAACTGTGCAACTCTACTGCAGAGTAAGCTTCCATAAATATCAGCTTGATTGAACTGTGTCTGATTGTGTTCTGTTGTGGCCAACAGATTAGAATACACCTTCCATTTAaatgattttcacttttcaccAAGGGAATGTATGGTTCACCTATGGCACAGATTGCACATGACAAGAAACTTTATTTCTTCAAATTTCTTCAAATTTGTACATTTGAAACGTGCACTTTAGAGTCTACTGTACTGCAATATTCCCTTAATTTAGTACTTGATCATGTGCTATATATGGTAAACTTGTCATAAATCTGCTGTTATTATTATCAAGATGAATTTGCATAAAGATACTTCATTAGATAAAGA

Function

NR:

description
claudin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619544.2 True 1753 mRNA 0.44 4 11903691 11906713

Neighbor

gene id symbol gene type direction distance location
ccdc50 ccd50 coding upstream 24425 11845719 ~ 11879266 (+)
LOC110534079 LOC106574089 coding upstream 236999 11664608 ~ 11666692 (+)
LOC110523899 LOC106574090 coding upstream 389264 11433102 ~ 11514427 (+)
gipc3 LOC106574151 coding upstream 1740743 10140230 ~ 10162948 (+)
lim2.2 LOC106574149 coding upstream 1795803 10104169 ~ 10107888 (+)
LOC110534688 LOC106573995 coding downstream 15863 11922576 ~ 12025076 (+)
cpox LOC106573996 coding downstream 131012 12037725 ~ 12043817 (+)
LOC110535080 LOC106574000 coding downstream 150095 12056808 ~ 12072687 (+)
LOC110535183 LOC106574001 coding downstream 208373 12115086 ~ 12147336 (+)
mindy4 fam188b coding downstream 247709 12154422 ~ 12165172 (+)
G10521 NA non-coding upstream 1727 11901734 ~ 11901964 (+)
G10519 NA non-coding upstream 3635 11899719 ~ 11900056 (+)
G10512 NA non-coding upstream 10914 11892415 ~ 11892777 (+)
G10509 NA non-coding upstream 13112 11890172 ~ 11890579 (+)
G10510 NA non-coding upstream 14175 11889209 ~ 11889516 (+)
G10596 NA non-coding downstream 129833 12036546 ~ 12098355 (+)
G10598 NA non-coding downstream 139429 12046142 ~ 12048908 (+)
G10600 NA non-coding downstream 171445 12078158 ~ 12081746 (+)
G10618 LOC106573999 non-coding downstream 176870 12083583 ~ 12084503 (+)
G10657 NA non-coding downstream 259141 12165854 ~ 12166761 (+)
LOC110510920 LOC106574155 other upstream 1912149 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 2443738 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3647813 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 1331900 13238613 ~ 13295452 (+)
G12410 NA other downstream 1722150 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2285743 14192456 ~ 14214939 (+)
G13380 NA other downstream 2772637 14679350 ~ 14679578 (+)
G13381 NA other downstream 2772985 14679698 ~ 14680027 (+)

Expression


Co-expression Network