LOC110534688 (LOC106573995)


Basic Information

Item Value
gene id LOC110534688
gene name LOC106573995
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11922576 ~ 12025076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619656.2
TTACAGAAAATGTTTCCTTGACTGAAGTAGTCCCATTTACGCCCCGCCATTACCGTCCGGAACATCTGCCAAAAGACTCATTGAATGGGAAGCAAACCTTTTTCAACGTTTAGCCTACCACGTGACTATCACATCTTCTATCTGGACTCCGCAAGCTGTCCTGGTAATTTTATCACAAAACCGAGGAGCTTGTGCAAACTGGTGCGCGTGGAAAAAGATAACTAACGCCGAAGATGGATGTTGTGCATTTTTCCATTGGTAGTATCTTGTCGATTGCTCTTCAAGCGCTGTTGTTGTCTTCTTCATATGGTTCGTTGGAGCCCTACGACCTTTTATACAACAATGCCGTCGAAGCATTTTACAGAAAAGACTATAAAGATGTGGTGCGACACATGGAGGGTGCGCTCAGAAGCTACGCAGAAGTCCGCCAGACTAAAGTCCGATGTCGGCTGAGATGCCAGAACCAGCACCCGTTTGATTCCGCCTCCATGGACCTGCAGTTCTTTGACGTGGTTCTCCGAAGATCCTATTGTCAGAACGAGTGCATTGAGGAAAAAGTTGGAACACAGTCCATGCACAAAATCAGCGAGGATGTCATCCAGGATTTCCACAGACGAATCCCGTACAACTATCTTCAGTTGGCTTATCAGAAGTTGAAACAGTTGGACAAGGCAGCAGCAGCGGCCCACACCTATTTCCAGGCAAACCCGGAGAGCGTGGAGATGGATCAGAACCTGGAGCAGTACAAGGCTCTGGAGGGCACCGACCTGGACCACTTTGTGGACAGAGAGGCACGGCCACATCAGCGGTCCTTCTCAGCGGGGGTGAAGCTGTATGACAATGCAAACTATGAGGAGGCCATCTCCCTGTTCGAGGAGGCCCTCCAGGAGTACTACAGGGCTGACGTGGAGTGTCGGGCCCTCTGCCAGGGGCCCCAGAGGTTCGAGGAGCAGGACCATATCCTCTACCGCTACAGCCTCTACCAACTGATCTCAGaccaCTTCACCCAGGTGCTGCACTGTGAACACGAGTGTGTTAGAGACCTGTCCACTCGGCCCGGTCGTCTGTCTCCCATGGAGAACTACCTGCCTCTGCACTACGACTACCTGCAGTTTGCCTACTACCAGCttaACATGGTGGAGGAGGCCTTGGCGTGTGCCCAGTCCTACCTGCTGTTCCACGAGGGGGACGAGTTTATGACAGAGAACGTGGAGTACTATAGAGAGGCTATAGGTCACGACCTCAAACCCCGGGAGAAGGCTGAGTGGTACCTGCGGCGCCATGAGCAGGAGCTGGAGCTACTGATGATCGGCAGTGACAACATGCACGTGGAGCTTACAGAGGGGCATTATTGGACCAGCACAGGAGGCAGAGAGGATTCTAACCGGATCCCTTCTGGtactgatggatggatggagtacGTGCCCATCTCAGAGAAGAAGAACTTCACCCTGGCCCCGCCACAGGAGCTCAGAGAAGGAGGGCCCCTGGTGTATGACAGTGTGCAGCTGATCCAGAACTCACAGGCCCTGAACGGAACTCAGAGGGTTCTCCTGGATGATGTCATGTCTGTGGAGGAGTGCGCCGAGCTCAAAAACCTGGCCCATACTATCACTATGGCAGGAGATGGATACAGAGGGAAGATGTCTCCTCACACACCCAACGAGAGGTTTGAGGGAGCCACTGTGTTAAAAGCACTGCAGTACGGCTATGAGGGCCGTGTCCCTCTGAAGAGCGCTCGTCTGTTTTATGACGTCAGCGAGAGGGCAAGGCGCATCATCGAGTCTTACTTCCTGCTCAACTCAACACTTCACTTCTCCTACACACACCTGGTGTGCCGTACCGCCATCACAGGGCAACAGGACCATAGAAATGACTTGAGCCATCCCATCCACGCTGACAACTGTCTGTTAGACCCAGAGGCCAACGAGTGCTGGAAAGAAGCACCAGCCTACACCTACAGAGACTACAGTGCTCTGTTGTACCTGAACGGAGACTTTGAGGGCGGGGAGTTCATCTTCACAGAAATGGATGCCAAAACAGTCACAgctCAGGTGAAGCCAAAGTGTGGTCGTATGGTGGGCTTCTCGTCCGGAGGGGAGAACCCCCATGGGGTGAGGGCCGTCACCAGGGGGCAGAGGTGTGCCGTGGCCCTGTGGTTCACCTTGGACCCCCTCTTCAGAGAACTGgagCGTCTACAGGCTGATGAGGTGGTGCAGGCATTGGACAACCAAAGCAGCCAATCAAAGTGGGACACGAGCCTCAACATCAACCCCAAAGATGAGCTGTAGTAGCCAACCAACACCCAGCTCTGCATCCCCCAAATCTTTATGTCTATTTATTTAATGAAGTTTGGATCAGAACAATTTTATTTTTGTACTGTTTGATGTGCAAGGTTATATCGTTGTTGTTCTTAGTTTTGTTGTCGTCTTGGCTTTAGTGTTGTTGTGATTTTTATTTCTGTAAATGCCAGTACTTGAGTTCCCATTTGGGTCTTAGTTTTTCTCTCTGTTGGGTTGAAACCCAGTCGTTGTACCTCACACTTTAAAGTTTCAGGTAACTTCCAGGTCATTTCCAGGTCACTTCCAGGTCACTTTGTGATGAACTTTAAAGTTTCAGGTAACTTCCAGGTCACTTCCAGGTCATTTCCAGGTCACTTTGTGATTCATATACGAGGTTGTTTCAATACCACCCTGTCCTACATATGTCCAGTTTTTACTGCACTGTGAACCAGCCAAAGAGAAGAAAGCCAGTTGACATTGTTTCTCTCTgttagaaaaaataaataaataatgtctGTTTATGCTTTGGTTTATAACGTTTAAAACATGCACTCATAAAACAATATTTCTTTCAGGCGGTGTGAACACAGTAAATGTTTATCTATTTATTCATTGAAATATTGTCTTGAATATGCATTTACCGAGAGAAAGATGTCGGGCATTATTTTTACAAACAGGGAGCTATAATCCTTTTCAGTGACGGACAGTAATGTCTGATCTTATCTGTCCCGACTTTATGTGCACTTCCTGTTTGTAGTGTGATAAAGACGTCATCCCTCCCTAGCTCTGGTCCATGACGTTAGTGCATCTTACTAGTGTTAGCAAGCCTTAGTAACGCCTCGGACCAGAGCTAATCCCTCCGTTCAGTGTAATCGAACACAGAGTAAGATAACTGTTTACAAGTTAGCTGACACAATGGTGTGTGTTTTAAAGATCGACAGCTGCTATTGCAATTGTCGGCATTTGATATTAGAACCTTTTTAATAAAAGATGTCATTTATTCCTGTTTAAAGGAATTATTATTTTATGGTGGCGTAATAAGTGTCCTTTCCTTTCAAAACGTCCTCATTTCATGGGTAACAATAGACAGGCAGGCACATGCACTGTTATAGTCCAATGGAAAGAATGTGccttgtgtgtgtactgtgataTTTCAATGATACAACTGCTAACTAAATGTAACTTATCATTTTAAGTTAATAGAGTAGGGTTTTAGCTTATCTTTTGATAGGGAGGATGGCCACTTGTGTCTAACTAATATTTAAATATGAATTGCTGTATCCATCTCTGTTGTTGTAATGTGTACTTATAAATTAAAAAGACTATACTGCATAAAA

Function

NR:

description
prolyl 3-hydroxylase 2-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
K22459 P3H2; procollagen-proline 3-dioxygenase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619656.2 True 3619 mRNA 0.47 15 11922576 12025076

Neighbor

gene id symbol gene type direction distance location
LOC110534540 LOC106574080 coding upstream 15863 11903691 ~ 11906713 (+)
ccdc50 ccd50 coding upstream 43310 11845719 ~ 11879266 (+)
LOC110534079 LOC106574089 coding upstream 255884 11664608 ~ 11666692 (+)
LOC110523899 LOC106574090 coding upstream 408149 11433102 ~ 11514427 (+)
gipc3 LOC106574151 coding upstream 1759628 10140230 ~ 10162948 (+)
cpox LOC106573996 coding downstream 12649 12037725 ~ 12043817 (+)
LOC110535080 LOC106574000 coding downstream 31732 12056808 ~ 12072687 (+)
LOC110535183 LOC106574001 coding downstream 90010 12115086 ~ 12147336 (+)
mindy4 fam188b coding downstream 129346 12154422 ~ 12165172 (+)
LOC110535487 NA coding downstream 225093 12250169 ~ 12253531 (+)
G10521 NA non-coding upstream 20612 11901734 ~ 11901964 (+)
G10519 NA non-coding upstream 22520 11899719 ~ 11900056 (+)
G10512 NA non-coding upstream 29799 11892415 ~ 11892777 (+)
G10509 NA non-coding upstream 31997 11890172 ~ 11890579 (+)
G10510 NA non-coding upstream 33060 11889209 ~ 11889516 (+)
G10596 NA non-coding downstream 11470 12036546 ~ 12098355 (+)
G10598 NA non-coding downstream 21066 12046142 ~ 12048908 (+)
G10600 NA non-coding downstream 53082 12078158 ~ 12081746 (+)
G10618 LOC106573999 non-coding downstream 58507 12083583 ~ 12084503 (+)
G10657 NA non-coding downstream 140778 12165854 ~ 12166761 (+)
LOC110510920 LOC106574155 other upstream 1931034 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 2462623 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3666698 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 1213537 13238613 ~ 13295452 (+)
G12410 NA other downstream 1603787 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2167380 14192456 ~ 14214939 (+)
G13380 NA other downstream 2654274 14679350 ~ 14679578 (+)
G13381 NA other downstream 2654622 14679698 ~ 14680027 (+)

Expression


Co-expression Network