cpox (LOC106573996)


Basic Information

Item Value
gene id cpox
gene name LOC106573996
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12037725 ~ 12043817 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619755.2
CAGTTAAACAAGCCTGCAAAGTCTCATCGGGAAACACCATTCCCCATGCTTCATCGCTCGGTTCAAACCAAGTACACCCCCCCCTTGCGGACCTGTCTGCTTGCACGTCTGTCAACTTGTGATAGTATTTTTCAGTTTTTCCTAGATGTCCACCAATTTGTACCTTTTACACGGAGACGATAGCTAGATCATTTACTACTCATGGCTACCATCGTTCTTTATTCCATAAACAGAACGGCGCAAACCACCGTGAGACAATGTTTGATTCCTTATTCAAAGGAAGCTTCCAGAGTCGACTCGCACCTTTCTGTCTTCCTTAAAACTTCAGTCCGAAGGTTAACTTCGCTTCCGAGAGTGAGATGGGTTCCCAACGCTACTGGAGTGCGGTTCATGTCCCTCGGGACAGCAGGCAGAACTGCACCCGGGCGAACCAGGAGAGGCGCAGTGCTTGTAGCTGGAGCAGCCGTGACAGTGGCGGGGTTTGTGGCCAGCGCTACTCACTTTCAGCGAGCTGAAATGGCATCGGTGATCCCCAAAACCGAGGAGGAGGACACGGAGATAGCGGAGAAATGCAAGACATTCATGTCTCCGCCGTGTACCGATGTCAAAGTTCTGCAGCAGAGGAAAGAAGAGATGTGCACGAGGATGGAGATGCTGATCATGGAGACGCAGGCGGAGTTCTGCAGAGCGCTCGAGGAGGTGGACGGCGGCAAGTTCAAAGTGGACCGATGGGAACGGAAAGAAGgtGGCGGGGGCATCAGCTGTGTGCTGCAGGATGGGAGGGTGTTTGAGAAGGCGGGGGTCAACGTGTCCGTGGTGTTTGGGAACCTGACCGAGGAGGCCGCCAAGCAGATGCGCAGCAGAGGGAAGGTCCTCAAAGGAAAAGATGGCAAGCTGCCGTTCTGTGCCATGGGGGTGAGCTCCGTCATCCACCCCACGAACCCTCACATTCCCACAGTGCACTTCAACTACAGATACTTTGAGATAGAAGAAGGAGACGGTACTAAACAGTGGTGGTTTGGTGGGGGTACAGACCTGACTCCTACCTATGTCAATAAGGAGGATGGTGCTCACTTTCACAACAGTCTGAAGGAGGCCTGTGACAAACATCACCCTCAGTACTACCCCGACTTCAAGAAGTGGTGTGACCGGTACTTCTACATCCCCCATCGTGGCGAGACGCGGGGAATCGGTGGCATCTTCTTTGACGACCTGGACTCTCCCAGCCAGGAGGAGGCGTTCAGCTTCGTTAAGAGCTGTGCCCACACCGTGGTGCCCTGTTACCTGCCCATTGTCCAGAAACACCTTAATGACCCCTTCAGCCCAGAGGAGAAGGACTGGCAGCAGGTGCGAAGAGGAAGGTATGTGGAGTTTAACCTGGTGTATGACAGAGGGGTGAAGTTTGGACTGGCCACGCCAGGCTCCAGGATCGAGAGCATCCTCATGTCCTTGCCTCTCACAGCCAAGTGGGAGTACATGCATGAGCCTCCTAAAGGCACCCTGGAGGCCGATATGCTGGAGGTGTTACAAAACCCCAAGGAGTGGGTCTGACACGGACATTAACATGGCAATAACATCCTGACTCGGCCTGTTGATGACTGGAACAGGTGTCCGTCCCCTTTCGACTGCAGATCATTGCTTTTTCTCATTGGTCAACTCAACTGCAAACTCGTCACAGATACTATTAGCTATAGTGTTCACTGGAAAAAACACACTCGCTCTTATTGGTTTTACACTTTGTTTTAATCATGTCTGTCAGATAAGCCTTGTTACCACTGCCTGAATTGCTTTATCATGGATGTCTTTTCCTTTTTGGATCGATTGCTTCATCTGTTTTGTCTCTCAGTGCCCTCTGGTTGTTAGTGTTAGCCCTAACCCAGGATGTTTGTCTCTCAGTGCCCTCTGGTTGTTAGTGTTAGCCCTAACCCAGGATGTTTGTCTCTCAGTGCCCTCTGGTTGTTAGTGTTAGCCCTAACCCAGGATGTTTGTCTCTCAGTGCCCTCTGGTTGTTAGTGTTAGCCCTAACCCAGGATGTTTGTCTCTCAGTGCCCTCTGGTTGTTAGTGTTAGCCCTAACCCAGGATGTTTGTCTCTCAGTGCCCTCTGGTTGTGTTCACCaaacagatggggggggggggggaaaccctTATTCTCATTTTCAGTTTCAAACTGTTTTCTTCCGTCTGTTCGTGCTGAATGTGTACAAGAGAAAGTGGATCTGAACCCCTCTGGGTTTGTGGGCTACGCCATTGATGTAAACATAATTAAAGATGTTTTAATATCCTATCTGTCATGTCATCCACCAACAGAATTTATTAATACAAGTTCTATGAGAAAGTGCATCGTCA

Function

NR:

description
oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial-like

GO:

id name namespace
GO:0042541 hemoglobin biosynthetic process biological_process
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004109 coproporphyrinogen oxidase activity molecular_function

KEGG:

id description
K00228 CPOX, hemF; coproporphyrinogen III oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619755.2 True 2347 mRNA 0.51 7 12037725 12043817

Neighbor

gene id symbol gene type direction distance location
LOC110534688 LOC106573995 coding upstream 12649 11922576 ~ 12025076 (+)
LOC110534540 LOC106574080 coding upstream 131012 11903691 ~ 11906713 (+)
ccdc50 ccd50 coding upstream 158459 11845719 ~ 11879266 (+)
LOC110534079 LOC106574089 coding upstream 371033 11664608 ~ 11666692 (+)
LOC110523899 LOC106574090 coding upstream 523298 11433102 ~ 11514427 (+)
LOC110535080 LOC106574000 coding downstream 12991 12056808 ~ 12072687 (+)
LOC110535183 LOC106574001 coding downstream 71269 12115086 ~ 12147336 (+)
mindy4 fam188b coding downstream 110605 12154422 ~ 12165172 (+)
LOC110535487 NA coding downstream 206352 12250169 ~ 12253531 (+)
LOC110525067 LOC106574005 coding downstream 214151 12257968 ~ 12312639 (+)
G10521 NA non-coding upstream 135761 11901734 ~ 11901964 (+)
G10519 NA non-coding upstream 137669 11899719 ~ 11900056 (+)
G10512 NA non-coding upstream 144948 11892415 ~ 11892777 (+)
G10509 NA non-coding upstream 147146 11890172 ~ 11890579 (+)
G10510 NA non-coding upstream 148209 11889209 ~ 11889516 (+)
G10598 NA non-coding downstream 2325 12046142 ~ 12048908 (+)
G10600 NA non-coding downstream 34341 12078158 ~ 12081746 (+)
G10618 LOC106573999 non-coding downstream 39766 12083583 ~ 12084503 (+)
G10657 NA non-coding downstream 122037 12165854 ~ 12166761 (+)
G10691 NA non-coding downstream 167926 12211743 ~ 12213285 (+)
gipc3 LOC106574151 other upstream 1876439 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 2046183 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 2577772 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3781847 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 1194796 13238613 ~ 13295452 (+)
G12410 NA other downstream 1585046 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2148639 14192456 ~ 14214939 (+)
G13380 NA other downstream 2635533 14679350 ~ 14679578 (+)
G13381 NA other downstream 2635881 14679698 ~ 14680027 (+)

Expression


Co-expression Network