LOC110535080 (LOC106574000)


Basic Information

Item Value
gene id LOC110535080
gene name LOC106574000
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12056808 ~ 12072687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619978.2
GAAATCCAGAGAGAGACCTAGGCACTAGGACCCTGCAGGTGCCTCTCTGTGATATTTCAGCAATGTTCAGTGCGCTCGGACGACTCGCTTCAGCAGTAGTGATACGGTAGCTGCAGCAGCGTCCCTGACGCGCTGCCCACCCTCCACTCTCAGCAGGGGAGAATTACGAAATTCTTGGTTTGAGACCCAACCGCCAGCCCACGGTCCTCGGAGAAAGCTACTTTTGTTTACCATCCCATGGCTTCATCCGTGAGTGGAACGGAGGAGGTGCGCGTGTCGGCGTTGACACCGCTGAAGTTGGTGGGCTTGGTGTGCGTCTTCCTTGCGCTCTGCCTGGATGTCGGGGCGGTGTTGAGCCCCGCGTGGGTAACGGCGTATAACCAGTACTACCTGTCTCTGTGGGAGTCCTGCTGGAAGCCTGTCAACTCGGACACATGGCAGTGCAACACAACGCTCGAGACTGactGGCAGATTGCCACGTTGGCCCTGTTGCTGGGTGGTGCTGCCCTCATCCTGTTCTCCTTCCTGGTTGCCCTGGTGTCAGTGTGTGTCGGCTCCAGGAGCCGCTGCTACAGGCCTGTCGCTGTCTTGCTGTCCGCTGCAGTGGTGCTTCAGGTCTGCAGTCTGGTCCTCTACACCATTAAGTTCATTGAGACGGTCAGCTTGAGGATAAACCACGAGTTTAACTGGGGCTATGGCCTGGCCTGGGGGGCCACCATCTTCTCCTTCGGAGGGGCCATTCTCTATTGCCTCAACCCCAAGAACTATGAAGACTACTACTAAACCCtgcaagaggagaagagagcccTCTACACAActtcatgccccccccccccccccccccccccccgggctaTGCTCTGAACCTAGTCTGTTTTATGTAACTGGTAGAGAAAATAAATATTCACAGAAAAAATGTTGGCGAATTAACAACAGTAGTGTCTATAGGTTCCATTCAGACCATCATACAATTGTACTGTACCAGATGGTTGGCTCACAGGCTTAAAGGGACACTCTTACTCATATTATGATGTTGTGTTCTCCAAGGGAATCTCTGCCTGTGTTGTGACTGATGTCTGCTATAGGCTAAGTGGTAAGGCTGAAGAGCCAATCAGACAGTTCAATGGAATCCTAATGTCCAATAAGATACATCAGTGAAACCATGTCAGGTCCGCTTTATGATAGGAACTTCAGCAGGAGTTGGCAGGCACAATGCTTTGTTATTAATGACCAATCAAAGAAGAGACCGGTGAGAGTGCTGGACATAGACCAATCAGAGAGCAGAAGGATAGTCCAGGTGGACAGATTGATCTTGAGGAGGAAAGAAGTAGAATATGAGACTCACCTAAGGAAAGGAATCAAGGATGCATACCTTCACCCCCACTAACATACTGGACAAAAATACAAACGCAACAGTTTcaaggattttactgagttacagttcgtatAAGGAAATACGTCaactttaattaattaattaattaggccctaatatatggatttcatatgactgcaGGGGAGCAGCCATGCATGGgctgggagggcataggtccacccactgtggagccaggcccagccaatctgaatgagtttttctccacaatagggctttattacagatggaaatactcctcagtttcatcagctgtccaggtgtctggtctcagatgatcctgcaggtgaagaagccggatgtggaggtcctgggctggcgtggttacacatggtctgtgatttgggcgtactgccaaattctctaaaattaagTTGTAGGTTGCTTATGGTAGAGgaattaacattacattatctggcaACCGCTCTAGTAGAAATTCCTGCAGTCCGCAAgccaattacacgctccctcaacttgagagatctgtgtgtattgtgcgacaaaactgcacattttagagtggccttttaaagtccccagcacaaggtgcacctgtgtaatgatcatgccgtttaatcagcttgatataccacacctgtcaggtatatcttggcaaaggagaaatgctcactaacagggatgtaaacacatttgtgcataaAATTGGAGCGagataagctttttgtgtatGAAAAATtactgagatcttttatttcagctcatgaaacatgggaccaacactttacatgtcgcgtttatatttttgttcagtatatttgatTACCTTTGTCTTTATTTCATCTGTGGTAATCTAAAAGAGGACTGGATGGGTTCAGGCAGGCAACATAGGCGTTTAACTGGTGGTTTTCTTTCACATGAAGGGGAGGtgacaaggagaggaagccactaTAGACTATTGGTACACGCCCCAATGCCACAAACAAGAGATGGTATAATTGGTTAGGCCAGAGGCCACGACACATTCCAGGCAAAATATTACTGGTTAAACATTAGCTCAGGCTACACAAAACCATTAAGTAGCGGTAAGGCATAATCGAAGACTGTGCGGCCTAACCCCAGCTGTGCCGGGTTCAGATAACAGCAGTTGATATGTAACTATGTACAGTAGTTTGAGTTGGttttgtgttaaatgctttaATATAGTGTAGTAGATAAGGTGTATGAAGAAGGCAATTGAccagtgttgtagtgtgtgggGCCTGAAGTGATATGATCAAACAGccaggggaggacggctcataatggctggaacggcgtcaaaccatgtgtttgataccactcCGCTCCTGCCGttaccccatcctccccaattaaggtgccaccaaccacgTTTGCGCTCACATACTTCCCATGTGATGCCTCTTGGGCAACACTAGATgtctcccaaatggtaccctattccctatatagttcactactgacaaggggacctggtcaaaagtagtgcactgtggaatagggtgccatttgggacacagagctTACGTACAAAGTCCTCTTAATACTGCACTATTATAGAAAATGTTTTGAATATACTCTCATCCATAACTTAAAAATAAAGTCTTTACATTAAAAATACATGTCAATGAAGAGAGTAGGAACGCTTGAGGTAGAAATGTGGGAGTGTAAAGGAGTAACGAGGTGTGTGTGCTGAGTGACTCAACATCTGCATtgcctgctgtttggggttttaggctgggtttctgtacagcactttgtgacatcagctgaagtaagaagggctttataaatccaTTTGATTGCTGATGTGTGTCTGATGCCTACTGCTTTGTTTACTAATACAATAAAACTGGCCATGAAAAAGA

Function

NR:

description
PREDICTED: transmembrane protein 47-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619978.2 True 3240 mRNA 0.47 3 12056808 12072687

Neighbor

gene id symbol gene type direction distance location
cpox LOC106573996 coding upstream 12991 12037725 ~ 12043817 (+)
LOC110534688 LOC106573995 coding upstream 31732 11922576 ~ 12025076 (+)
LOC110534540 LOC106574080 coding upstream 150095 11903691 ~ 11906713 (+)
ccdc50 ccd50 coding upstream 177542 11845719 ~ 11879266 (+)
LOC110534079 LOC106574089 coding upstream 390116 11664608 ~ 11666692 (+)
LOC110535183 LOC106574001 coding downstream 42399 12115086 ~ 12147336 (+)
mindy4 fam188b coding downstream 81735 12154422 ~ 12165172 (+)
LOC110535487 NA coding downstream 177482 12250169 ~ 12253531 (+)
LOC110525067 LOC106574005 coding downstream 185281 12257968 ~ 12312639 (+)
armh1 cssa16h1orf228 coding downstream 388680 12460957 ~ 12473058 (+)
G10598 NA non-coding upstream 7900 12046142 ~ 12048908 (+)
G10521 NA non-coding upstream 154844 11901734 ~ 11901964 (+)
G10519 NA non-coding upstream 156752 11899719 ~ 11900056 (+)
G10512 NA non-coding upstream 164031 11892415 ~ 11892777 (+)
G10509 NA non-coding upstream 166229 11890172 ~ 11890579 (+)
G10600 NA non-coding downstream 5471 12078158 ~ 12081746 (+)
G10618 LOC106573999 non-coding downstream 10896 12083583 ~ 12084503 (+)
G10657 NA non-coding downstream 93167 12165854 ~ 12166761 (+)
G10691 NA non-coding downstream 139056 12211743 ~ 12213285 (+)
G10692 LOC100380853 non-coding downstream 144669 12217356 ~ 12217585 (+)
LOC110523899 LOC106574090 other upstream 542426 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 1895522 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 2065266 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 2596855 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3800930 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 1165926 13238613 ~ 13295452 (+)
G12410 NA other downstream 1556176 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2119769 14192456 ~ 14214939 (+)
G13380 NA other downstream 2606663 14679350 ~ 14679578 (+)
G13381 NA other downstream 2607011 14679698 ~ 14680027 (+)

Expression


Co-expression Network