mindy4 (fam188b)


Basic Information

Item Value
gene id mindy4
gene name fam188b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12154422 ~ 12165172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942469.1
ATGTCTCCTATCCGGAGGGGTTGAGAAGAGTGTAAGAAAGGAGTGAAGTTGAAGTAAGACACAAGATGGTTCCTTGTCAACAGAGGGATCCTGACATGTTGCAAGAAGGTGGACGTATTACTTTGGTTATCAACTGCACAGCGCAAACATCTTAGAAAATAGGCGGCATTGTGAGTGTGGCTGAGCGTTTTTTGGGATTCAGGGACTTCTGCAGAGGCATTACCTTACAAGGAATACTGTCGATGAATGAACCGCCTCCCgttacagtaggtggcggcaataCACCAATAGGTATAGTCTGCCATAAAAcattgaagaagaagaagaagagcggAAGCAAGGATGCATGACGCACGACGAAGCCTCTCTTGGCCCAGCAACACGCATGCACTGTAACCATAGAAACAGACCATACTGTTAATTATTATGGTTGTtctatactgtgctgtatgtaGCCTGCCGCTAGCTGGTTAGGTAGCTAACATTTTTTTGTGGGGGAATTTGTCGTTGATGCCACAAGTTATGGTTGTACGAGTAGAAGAAGTTGCTGCATCGCTTGTGCGGGAATTTCTCAGTCGGAAGGGACTCAAGAGAACGATTGCCTGCATGGATGAAGAGCATCCCCGTACAGATGCCAGCATCAACAATAGATCCGATCTGCGACAAATTCTTCATTTGGAAGGTCTATATAAAAAGAACAAGGCCCAAAACTGTCCCCTGAAATCAATGTTGGAAATCATTGTAAGACATCACATTgaaggacataaagaggacaggCCAGGCTTCAACAGTGACGTCATCCAGACCGTATCAACTACACAGAAGTCACTTTCAGAGGTTGTCTGTCCACCTCATGGTACATTGTCATCATTTGAAGTGTCAGATACTCCCCAGAGAAGTTTCTGGAGCCATAGCCTTTCCTCAGAGGGCCAGCAGGACCGACAGCCTGTACCCTTCTCCCTAGACAATGACAGCACCGCTAAAAGGGAGTCCTTTTCAGACAAAAACACAGTCGTCACCACAGAGAGTACTCATAAGAACAAAACAAGTCGCCTCAGACGAGGCATGATGGCAGGTCCCATAGCTAGTTCCCCCCAGGAATCGAATAGAAAACGTCAGACTCGACGGTTGGGAGGCCCTAATCTTCTCCTGGCAAATAATGAAAACCACAAAAACATCAGTGATGGGCCTCTGTTGACTACTGTCCAGTCACAGAGAATGGTTAAAGGGTTGACAGAGCTCTCCACTGCTGACCCTGTGAGAGAAAGCCAACAGACGCGGCGCAGCACACTGGGAAAAGGATTTGATGAAGATGGCTATGGGTTTGAGAGAGTAGGAAAAGACAAGCACAAGACCAGCAGaaCAAAGTCAATGACCAATCAAAATGTTGATCTGGACATGTCGGAGATGATTTTGGATGAcattgatgatgatgaggagttgCGTGAGCTCTCCAGAGTGTCCTGCCACTCCTCCAGTTTGCCTCCAACCACTTCTGATAGTCAACCCATGGACCAGCATACTGCCATTGCCCTGAAAGAGCTCATCCTTGGCTCCAGCACCAGTTGTTTCAGTGCCGAGTGGAGGAGTCAGAGTTTCACTTTCTCCGATGCACCTGATCTGAGATATGGGCTGGTTCAGAAGAAGGGTGGTCCTTGTGGAGTTCTGGCTTCAGTCCAGGCTTGTATTCTGCAGAAACTTCTATTTGAGGGGACCGGCAGCGACGCAGGGCACCAAAAATTAAGACCCTCTGGTGCTGTGAGAACAAAGTGCCTCACTTTAGCCACTGCTGAGATCCTGTGGAGGGCTGGGGAGGGGAAAAAAGCCACCATCGCCATAACATCAGGAAGAAATCATTTCACCCCTATAGGACACCATAGATCTGAAGGAGTACTAGAAAAGATGACATGTATTGATGTTGACAATCTAAAGGACCTTCAGTTGCTTGTGGAACAGCATATTCAACAGTTTGAGTCGGGAGCCTTAGGGTGTATATTGCTCACCATCTCTGCTATTCTCTCCAGATCTATTGACCGGGTTAGAGAGGATATGGATGTCCCCAACACCACACTCATCGGAGCCCATGGCTACTGCACACAGGAGCTTGTCAATTTATTGCTGTGTGGACAGGCTGTGTCCAATGTCTTCAACAACAATATGGAGCTGGATTCAGGCAATGGAAACCTGACCCTTCTCAAGGGAATAAGATGTCGCAGTGACATTGGACTGCTGTCCTTATTTGAACATTATAATATATGCAAGGTTGGCTCCAACCTGAAGACTCCCAAGTTCCCTATCTGGGTGGTGTGCAGCGAGAGCCATTTCAGCGTGCTCTTTGGTGTGCAGGAGCTGCTGAGTGACCAGTGTGTGATCGGGGAGTTTGACCTGTACTACTACGACGGCCTAGCCAACCAGCAGGAGGAAATCTGCCTAACTGTCTTTGTAGGTACCTCAGGAATATCTGCTGGCTGCCAAGGTGTGGACACCGATCTCATTCCTCCTCTTGAACACTGTATACGGACCAAATGGAAAGATGCCATTGTCAATTGGAATGACACCGAGCCCATACTTTGACTGGCTAGTGGATAGAAGGTGATGACTGTAGAAGAGACTGGGCCTACCCCATGGCTGAAGACACAAAATATACTGCTTTCTTATTGCAAAATATGCAATTTAGCAAACAcgtttatccaaagcgacttatagCAGCCATGCATGCATTACAGATTAAATAGATTTACTTACAATAGCTgtgcatgggtaaaatcactggggaagccaagccccccccccccccccccccccaaagccatattacaacttactgtgtgtgttgtgataactgcgttgtttgctctagaacctgttagttcatatgccttgccactgtgatatataggcctaaggacGAGACAGTAAGAAGAcatagtggcagaataaattcaaccacacctttgtttagtcacaaaaccggagagaaacctctgtctggtgaagtccacaaatcATATTGCATGTAGCAAACAGTTATATGACCTACAGCATaatcaagcaagttaatgtttctgacattttactaaacaactattgatttagaaccacagagagttaacataaggagctgcctccactattccaggcACCATTTctacttcaacatttcaacatcatcaactCAAATCCCCTATGCTtggtctaatacagtgacaactaaaagataccaaaaacgatttggtccaatcaacgtaagctaaatgtgatgtggctgtccatggttctgctttgtctctctgtgtgtgtgcgcattcgTGCAAGTAGAattaacatgttgactcaccctacttgtagagaaacgccaatgccatcatCTCCTTTCATGTCGATGAAatggtctatgactctgtcattcagtacacacttttagtttttgctgtcctaggctacctggctaaaatgcttgctagctagcttaaCTTACTTTCATGGGCAACAATgcgccaggccagctagttaacattagtctACTAcgtctagctacatattgaacttccatcatctcaggccaggggcacaatgtatgaattaatggttggatcattatcaccattataatcattggcccgTACGGAGAATTAAAGCTGCATTGTATAACTTTTTGGGCatcccaaccaaattca
>XM_036942437.1
GTCTCCTATCCGGAGGGGTTGAGAAGAGTGTAAGAAAGGAGTGAAGTTGAAGTAAGACACAAGATGGTTCCTTGTCAACAGAGGGATCCTGACATGTTGCAAGAAGGTGGACGTATTACTTTGGTTATCAACTGCACAGCGCAAACATCTTAGAAAATAGGCGGCATTGTGAGTGTGGCTGAGCGTTTTTTGGGATTCAGGGACTTCTGCAGAGGCATTACCTTACAAGGAATACTGTCGATGAATGAACCGCCTCCCgttacagtaggtggcggcaataCACCAATAGGTATAGTCTGCCATAAAAcattgaagaagaagaagaagagcggAAGCAAGGATGCATGACGCACGACGAAGCCTCTCTTGGCCCAGCAACACGCATGCACTGTAACCATAGAAACAGACCATACTGTTAATTATTATGGTTGTtctatactgtgctgtatgtaGCCTGCCGCTAGCTGGTTAGGTAGCTAACATTTTTTTGTGGGGGAATTTGTCGTTGATGCCACAAGTTATGGTTGTACGAGTAGAAGAAGTTGCTGCATCGCTTGTGCGGGAATTTCTCAGTCGGAAGGGACTCAAGAGAACGATTGCCTGCATGGATGAAGAGCATCCCCGTACAGATGCCAGCATCAACAATAGATCCGATCTGCGACAAATTCTTCATTTGGAAGGTCTATATAAAAAGAACAAGGCCCAAAACTGTCCCCTGAAATCAATGTTGGAAATCATTGTAAGACATCACATTgaaggacataaagaggacaggCCAGGCTTCAACAGTGACGTCATCCAGACCGTATCAACTACACAGAAGTTGGTGACAAAGTCTCCAATATTGACACCAACAGTGTATGACCAAAGCAGGGCAGAAGATAACACTACTGGATTTATTTTCAACAAAACTGACATGTCAAGGTCACTTTCAGAGGTTGTCTGTCCACCTCATGGTACATTGTCATCATTTGAAGTGTCAGATACTCCCCAGAGAAGTTTCTGGAGCCATAGCCTTTCCTCAGAGGGCCAGCAGGACCGACAGCCTGTACCCTTCTCCCTAGACAATGACAGCACCGCTAAAAGGGAGTCCTTTTCAGACAAAAACACAGTCGTCACCACAGAGAGTACTCATAAGAACAAAACAAGTCGCCTCAGACGAGGCATGATGGCAGGTCCCATAGCTAGTTCCCCCCAGGAATCGAATAGAAAACGTCAGACTCGACGGTTGGGAGGCCCTAATCTTCTCCTGGCAAATAATGAAAACCACAAAAACATCAGTGATGGGCCTCTGTTGACTACTGTCCAGTCACAGAGAATGGTTAAAGGGTTGACAGAGCTCTCCACTGCTGACCCTGTGAGAGAAAGCCAACAGACGCGGCGCAGCACACTGGGAAAAGGATTTGATGAAGATGGCTATGGGTTTGAGAGAGTAGGAAAAGACAAGCACAAGACCAGCAGaaCAAAGTCAATGACCAATCAAAATGTTGATCTGGACATGTCGGAGATGATTTTGGATGAcattgatgatgatgaggagttgCGTGAGCTCTCCAGAGTGTCCTGCCACTCCTCCAGTTTGCCTCCAACCACTTCTGATAGTCAACCCATGGACCAGCATACTGCCATTGCCCTGAAAGAGCTCATCCTTGGCTCCAGCACCAGTTGTTTCAGTGCCGAGTGGAGGAGTCAGAGTTTCACTTTCTCCGATGCACCTGATCTGAGATATGGGCTGGTTCAGAAGAAGGGTGGTCCTTGTGGAGTTCTGGCTTCAGTCCAGGCTTGTATTCTGCAGAAACTTCTATTTGAGGGGACCGGCAGCGACGCAGGGCACCAAAAATTAAGACCCTCTGGTGCTGTGAGAACAAAGTGCCTCACTTTAGCCACTGCTGAGATCCTGTGGAGGGCTGGGGAGGGGAAAAAAGCCACCATCGCCATAACATCAGGAAGAAATCATTTCACCCCTATAGGACACCATAGATCTGAAGGAGTACTAGAAAAGATGACATGTATTGATGTTGACAATCTAAAGGACCTTCAGTTGCTTGTGGAACAGCATATTCAACAGTTTGAGTCGGGAGCCTTAGGGTGTATATTGCTCACCATCTCTGCTATTCTCTCCAGATCTATTGACCGGGTTAGAGAGGATATGGATGTCCCCAACACCACACTCATCGGAGCCCATGGCTACTGCACACAGGAGCTTGTCAATTTATTGCTGTGTGGACAGGCTGTGTCCAATGTCTTCAACAACAATATGGAGCTGGATTCAGGCAATGGAAACCTGACCCTTCTCAAGGGAATAAGATGTCGCAGTGACATTGGACTGCTGTCCTTATTTGAACATTATAATATATGCAAGGTTGGCTCCAACCTGAAGACTCCCAAGTTCCCTATCTGGGTGGTGTGCAGCGAGAGCCATTTCAGCGTGCTCTTTGGTGTGCAGGAGCTGCTGAGTGACCAGTGTGTGATCGGGGAGTTTGACCTGTACTACTACGACGGCCTAGCCAACCAGCAGGAGGAAATCTGCCTAACTGTCTTTGTAGGTACCTCAGGAATATCTGCTGGCTGCCAAGGTGTGGACACCGATCTCATTCCTCCTCTTGAACACTGTATACGGACCAAATGGAAAGATGCCATTGTCAATTGGAATGACACCGAGCCCATACTTTGACTGGCTAGTGGATAGAAGGTGATGACTGTAGAAGAGACTGGGCCTACCCCATGGCTGAAGACACAAAATATACTGCTTTCTTATTGCAAAATATGCAATTTAGCAAACAcgtttatccaaagcgacttatagCAGCCATGCATGCATTACAGATTAAATAGATTTACTTACAATAGCTgtgcatgggtaaaatcactggggaagccaagccccccccccccccccccccccaaagccatattacaacttactgtgtgtgttgtgataactgcgttgtttgctctagaacctgttagttcatatgccttgccactgtgatatataggcctaaggacGAGACAGTAAGAAGAcatagtggcagaataaattcaaccacacctttgtttagtcacaaaaccggagagaaacctctgtctggtgaagtccacaaatcATATTGCATGTAGCAAACAGTTATATGACCTACAGCATaatcaagcaagttaatgtttctgacattttactaaacaactattgatttagaaccacagagagttaacataaggagctgcctccactattccaggcACCATTTctacttcaacatttcaacatcatcaactCAAATCCCCTATGCTtggtctaatacagtgacaactaaaagataccaaaaacgatttggtccaatcaacgtaagctaaatgtgatgtggctgtccatggttctgctttgtctctctgtgtgtgtgcgcattcgTGCAAGTAGAattaacatgttgactcaccctacttgtagagaaacgccaatgccatcatCTCCTTTCATGTCGATGAAatggtctatgactctgtcattcagtacacacttttagtttttgctgtcctaggctacctggctaaaatgcttgctagctagcttaaCTTACTTTCATGGGCAACAATgcgccaggccagctagttaacattagtctACTAcgtctagctacatattgaacttccatcatctcaggccaggggcacaatgtatgaattaatggttggatcattatcaccattataatcattggcccgTACGGAGAATTAAAGCTGCATTGTATAACTTTTTGGGCatcccaaccaaattca

Function

NR:

description
probable ubiquitin carboxyl-terminal hydrolase MINDY-4 isoform X1

GO: NA

KEGG:

id description
K22647 MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942469.1 False 3677 mRNA 0.46 18 12154422 12165172
XM_036942437.1 True 3777 mRNA 0.46 18 12154424 12165172

Neighbor

gene id symbol gene type direction distance location
LOC110535183 LOC106574001 coding upstream 7086 12115086 ~ 12147336 (+)
LOC110535080 LOC106574000 coding upstream 81735 12056808 ~ 12072687 (+)
cpox LOC106573996 coding upstream 110605 12037725 ~ 12043817 (+)
LOC110534688 LOC106573995 coding upstream 129346 11922576 ~ 12025076 (+)
LOC110534540 LOC106574080 coding upstream 247709 11903691 ~ 11906713 (+)
LOC110535487 NA coding downstream 84997 12250169 ~ 12253531 (+)
LOC110525067 LOC106574005 coding downstream 92796 12257968 ~ 12312639 (+)
armh1 cssa16h1orf228 coding downstream 296195 12460957 ~ 12473058 (+)
LOC110536107 LOC106574012 coding downstream 319514 12484686 ~ 12496762 (+)
LOC110536612 LOC106574016 coding downstream 511561 12676733 ~ 12695295 (+)
G10596 NA non-coding upstream 56067 12036546 ~ 12098355 (+)
G10618 LOC106573999 non-coding upstream 69919 12083583 ~ 12084503 (+)
G10600 NA non-coding upstream 72676 12078158 ~ 12081746 (+)
G10598 NA non-coding upstream 105514 12046142 ~ 12048908 (+)
G10521 NA non-coding upstream 252458 11901734 ~ 11901964 (+)
G10657 NA non-coding downstream 682 12165854 ~ 12166761 (+)
G10691 NA non-coding downstream 46571 12211743 ~ 12213285 (+)
G10692 LOC100380853 non-coding downstream 52184 12217356 ~ 12217585 (+)
G11015 NA non-coding downstream 147551 12312723 ~ 12318190 (+)
G11089 NA non-coding downstream 176835 12342007 ~ 12342286 (+)
LOC110523899 LOC106574090 other upstream 640040 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 1993136 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 2162880 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 2694469 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3898544 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 1073441 13238613 ~ 13295452 (+)
G12410 NA other downstream 1463691 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 2027284 14192456 ~ 14214939 (+)
G13380 NA other downstream 2514178 14679350 ~ 14679578 (+)
G13381 NA other downstream 2514526 14679698 ~ 14680027 (+)

Expression


Co-expression Network