LOC110535487


Basic Information

Item Value
gene id LOC110535487
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12250169 ~ 12253531 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110535487
AAAACAGAAAGTAGACAAACTGCATTGCATTGATGAGCAGGGACAAGGTATAACTTGCTGTAAGTGAAACTAAAGTTGAGCATTAAGCTTTGTAACTGAGAGCCCTAGCTTCTCTGAAACCTCACTATAGAACCCTGTGGGATAATCTAAGAACAGAAAGAACATTCAGATACAAAGCATCGGATATGGCCACCCCCAGCAGTCTCCTGTCTGAAGATCAGTTACAGTGCTTTATCTGTCTGGATGTCTTCACTGAGCCAGTCACCACTTCATGTGGACACAACTTCTGCAAGGCCTGTATCAGCAGGTACTGGGATAGCGCTGGCTTCTGCCAGTGTCCAATGTGTAACGAGAAATTCAACAGGAGACCTGAGCTTCACATCAACACAACATTGAGAGAAGTTGTAGAGAATTTAAAAATAAAGTCCATAGTTCAAAATGAGTCCCTTGCCATACCGGGAGAGGTATCCTGTGAAGTCTGCACTGGGAGGAAGTTCAAGGCCCTGAAGTCCTGCTTAGTGTGCCTAgcctcttactgtgagactcacctGGAGCCTCATCAGAGAGTCCCGGCGTTAAGGAAACACAAGTTGATTGACCCTGTTGAGAACCTGGAAGACAGGATGTGTAAGAAGCACGAGAGACCTCTGGAACTGTTCTGTAGGACTGACCAGACGTGTGTTTGTCAATTCTGCACTGAAACAGACCACAAAGCTCATAATACTGTCCCTCTAGAGGAAGAGTGTGGAGCGAGGAAGGTTAAACTGGGGAAAACTGAGGCAGACGTGCAGCAGATGATCCAGGAGAGACTGCAGAAGGTTCAGGAGATCAAACACTCAGTAGAGCTCAGCAAGAAAGACTCAAGGAGAGAGATATCAGACAGTGTACAGGTCTTCACTGATCTGGTGCGCTCCATTGAGAGAAGCCAGGGTGAGCTCATTGAAGTGAttgaggagaagcagaaagcaACAGAGAGGCGGGCTGGAGCAGGAAATCACTGAGCTGAAGGGGAGAAGCACTGACTTGGAGCAGCTCTTACACACTGaggaccacctccacctcctccagagCTTCCCAACCCTGTGCACCCCTCCACACACCCAGGACTGGTCTGAGATAAGTGTTCACAGTAATCTGTGTGTGGGGACCTTGATAAGAGCTGTGTTTCAGCTGGACGAAACACggaataaagagatggggaagcTACCTGAAGTCAAACtgaagaggatgaagaggatgCAGCAGTATGAAGTGAATATAACTCTGGATCCTGATACAGCACATCCTGAACTTATCCTCTCTGAAGATGGGAAACAagtgagacatggagagacacaaATAAATCTCCCTGACAACCCAGACAGGTTTGAAAGAGTTGTTAATGTCCTAGGAAAGGATGGCTTCTCGTCAGGGAGATTTTATTATGAGGTGACGGTCAAGGGGAAGATTGAGTGGGATTTAGGAGTGGCCAGTGAGTCCATCAACAGGAAGGGTCCGATCACACTGAGCCCTAAGAATGGATACTGGGCTGTGTGGCTGAGGAATTGAAACCAGTACAAGGCTCTTGGTGACCCCCGTGTCTTGCTATCCCTGAAAGAGAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTTTGAGGAGGGTCAAGTCTCCTTCTACGATGTAGAGGCCAGGTCTCATATCTACTCCTTCACTGGCTGCACCTTCACTGAGAAACTCTATCCATACTTTAGCCCCTGTTTTAATGATGGTGTTAACTCTGCTCCTCTGATCATCTCTCCTGTCAATAACACAGACTGATGAACAAGTCTCAGATGTGTTGTTGGAATGGGAACAAATCAGTAAATTAAAGggacattttaaaaaattaaaaaattaaatctACTTCATACTCataatctccagcaccaccccaacatcaacatatgtgaaaatggcgcatttctatgttttgtcaTAAAAAAAGATTGTCAACCAATTAGTAGACAGTTAGTAGGCAATGACTACTCCTAATTGGTTAAAATCACGATGCACACCaatgatgatgaatatgaagttgaacattttttaaatgtccctTTTAAGTCAAGTTTCATACTACATGTTTAATTTCCATTAAACTATATCCTTGAGATCTTAGAATCTGAAAATGAAGGTTATTCAATTCTATTgtattctctgtctctgtatttctattaaaaacaaatgtttgtATTTACTGAAGGAAAACCATCAAATTAAATGATCTTAAATAAAAAGCAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110535487 True 2260 mRNA 0.44 2 12250169 12253531

Neighbor

gene id symbol gene type direction distance location
mindy4 fam188b coding upstream 84997 12154422 ~ 12165172 (+)
LOC110535183 LOC106574001 coding upstream 102833 12115086 ~ 12147336 (+)
LOC110535080 LOC106574000 coding upstream 177482 12056808 ~ 12072687 (+)
cpox LOC106573996 coding upstream 206352 12037725 ~ 12043817 (+)
LOC110534688 LOC106573995 coding upstream 225093 11922576 ~ 12025076 (+)
LOC110525067 LOC106574005 coding downstream 4437 12257968 ~ 12312639 (+)
armh1 cssa16h1orf228 coding downstream 207836 12460957 ~ 12473058 (+)
LOC110536107 LOC106574012 coding downstream 231155 12484686 ~ 12496762 (+)
LOC110536612 LOC106574016 coding downstream 423202 12676733 ~ 12695295 (+)
LOC110536795 tnni3k coding downstream 449142 12702673 ~ 12765497 (+)
G10692 LOC100380853 non-coding upstream 32584 12217356 ~ 12217585 (+)
G10691 NA non-coding upstream 36884 12211743 ~ 12213285 (+)
G10657 NA non-coding upstream 83408 12165854 ~ 12166761 (+)
G10596 NA non-coding upstream 151814 12036546 ~ 12098355 (+)
G10618 LOC106573999 non-coding upstream 165666 12083583 ~ 12084503 (+)
G11015 NA non-coding downstream 59192 12312723 ~ 12318190 (+)
G11089 NA non-coding downstream 88476 12342007 ~ 12342286 (+)
G11099 NA non-coding downstream 101381 12354912 ~ 12355130 (+)
G11101 NA non-coding downstream 104396 12357927 ~ 12358142 (+)
G11102 NA non-coding downstream 105000 12358531 ~ 12358851 (+)
LOC110523899 LOC106574090 other upstream 735787 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 2088883 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 2258627 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 2790216 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 3994291 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 985082 13238613 ~ 13295452 (+)
G12410 NA other downstream 1375332 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 1938925 14192456 ~ 14214939 (+)
G13380 NA other downstream 2425819 14679350 ~ 14679578 (+)
G13381 NA other downstream 2426167 14679698 ~ 14680027 (+)

Expression


Co-expression Network