LOC110536107 (LOC106574012)


Basic Information

Item Value
gene id LOC110536107
gene name LOC106574012
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12484686 ~ 12496762 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943199.1
AGTTTATGAAGCTGTATGACACTGGAGGATCAAGAGGGACAAACTACCAAGTGTCAAATGGCTTCAGCATGGCAAAGCGTTCAGTCCATGCACCAGTGGATGTTGGAGAATGGAGATAAGAGGACAGATCCATGGTTACTGGTCTACTCCCCCATGCCAGTGGCTTCTATATTCCTCCTCTATCTCGGTGTGGTCTGGGCTGGGCCCAAGCTGATGAAACACAGGCAACCTGTTGACCTCAAGGCTGTGCTCATTGTCTACAACTTCGCCatggtctgcctgtctgtctacatGTTCCACGAGTTCTTGGTCACGTCCATGCTGTCTAACTACAGTTACTTGTGTCAACCTGTGGATTACAGCACTAGCCCACTGGCGATGAGGATGGCCAAAGCATGCTGGTGGTTTTTCTTCTCCAAGGTCATAGAATTGGCTGACACGGTGTTTTTCATCCTGAGGAAGAAAAACAGCCAGCTGACCTTCCTGCATGTCTATCACCATGGCACCATGATCTTCAACTGGTGGGCAGGGGCGAAGTACCTGGCTGGAGGCCAATCGTTCTGCATCGGTCTTCTCAACACCTTCGTCCACACTGTAATGTACTCCTACTACGGACTGGCTGCTCTTGGGCCTCACATGCAGAAGTACTTATGGTGGAAACGCTATCTGACGTCACTTCAGCTGCTCCAGTTTGTCCTGCTGACAACTCACACGGGCTACAACCTCTTCACTGAGTGTGACTTCCCAGACTCCATGAATGCCTATgtgtttttctactgtgtcagcCTCATCCTACTCTTCAGCAACTTCTACTATCAGAGCTACCTCAGCAGGAAGAGCAAGAAGACGTGAAGGAtatggccgtgaccccactctccgagggtgtctcagggcgagttgggatatgcaaagagaaacacatttccaattgAATAGGACAAATACAAGCACCCACCAAATGATGTATTATTATATTCATAATCACACTCTTACTGTACCTGAATTCAATTCACTGTCAATTTAAACATTTTGCAAAAACATGA
>XM_021621786.2
AAGAACTTGAAATACCTGCCTGGTAGCTGTTGCCATAATGTGTCCAATCAAAACCATGTGTGGGGCGTCTCGCGTAGGCCTATTTTCACCCGTTTTCAGAAGGAAGTCCCACGCTTTTGTCGGTGTCAAATGGCTTCAGCATGGCAAAGCGTTCAGTCCATGCACCAGTGGATGTTGGAGAATGGAGATAAGAGGACAGATCCATGGTTACTGGTCTACTCCCCCATGCCAGTGGCTTCTATATTCCTCCTCTATCTCGGTGTGGTCTGGGCTGGGCCCAAGCTGATGAAACACAGGCAACCTGTTGACCTCAAGGCTGTGCTCATTGTCTACAACTTCGCCatggtctgcctgtctgtctacatGTTCCACGAGTTCTTGGTCACGTCCATGCTGTCTAACTACAGTTACTTGTGTCAACCTGTGGATTACAGCACTAGCCCACTGGCGATGAGGATGGCCAAAGCATGCTGGTGGTTTTTCTTCTCCAAGGTCATAGAATTGGCTGACACGGTGTTTTTCATCCTGAGGAAGAAAAACAGCCAGCTGACCTTCCTGCATGTCTATCACCATGGCACCATGATCTTCAACTGGTGGGCAGGGGCGAAGTACCTGGCTGGAGGCCAATCGTTCTGCATCGGTCTTCTCAACACCTTCGTCCACACTGTAATGTACTCCTACTACGGACTGGCTGCTCTTGGGCCTCACATGCAGAAGTACTTATGGTGGAAACGCTATCTGACGTCACTTCAGCTGCTCCAGTTTGTCCTGCTGACAACTCACACGGGCTACAACCTCTTCACTGAGTGTGACTTCCCAGACTCCATGAATGCCTATgtgtttttctactgtgtcagcCTCATCCTACTCTTCAGCAACTTCTACTATCAGAGCTACCTCAGCAGGAAGAGCAAGAAGACGTGAAGGAtatggccgtgaccccactctccgagggtgtctcagggcgagttgggatatgcaaagagaaacacatttccaattgAATAGGACAAATACAAGCACCCACCAAATGATGTATTATTATATTCATAATCACACTCTTACTGTACCTGAATTCAATTCACTGTCAATTTAAACATTTTGCAAAAACATGA
>XM_036943345.1
CCTATTTTCACCCGTTTTCAGAAGGAAGTCCCACGCTTTTGTCGGATAAGAGGACAGATCCATGGTTACTGGTCTACTCCCCCATGCCAGTGGCTTCTATATTCCTCCTCTATCTCGGTGTGGTCTGGGCTGGGCCCAAGCTGATGAAACACAGGCAACCTGTTGACCTCAAGGCTGTGCTCATTGTCTACAACTTCGCCatggtctgcctgtctgtctacatGTTCCACGAGTTCTTGGTCACGTCCATGCTGTCTAACTACAGTTACTTGTGTCAACCTGTGGATTACAGCACTAGCCCACTGGCGATGAGGATGGCCAAAGCATGCTGGTGGTTTTTCTTCTCCAAGGTCATAGAATTGGCTGACACGGTGTTTTTCATCCTGAGGAAGAAAAACAGCCAGCTGACCTTCCTGCATGTCTATCACCATGGCACCATGATCTTCAACTGGTGGGCAGGGGCGAAGTACCTGGCTGGAGGCCAATCGTTCTGCATCGGTCTTCTCAACACCTTCGTCCACACTGTAATGTACTCCTACTACGGACTGGCTGCTCTTGGGCCTCACATGCAGAAGTACTTATGGTGGAAACGCTATCTGACGTCACTTCAGCTGCTCCAGTTTGTCCTGCTGACAACTCACACGGGCTACAACCTCTTCACTGAGTGTGACTTCCCAGACTCCATGAATGCCTATgtgtttttctactgtgtcagcCTCATCCTACTCTTCAGCAACTTCTACTATCAGAGCTACCTCAGCAGGAAGAGCAAGAAGACGTGAAGGAtatggccgtgaccccactctccgagggtgtctcagggcgagttgggatatgcaaagagaaacacatttccaattgAATAGGACAAATACAAGCACCCACCAAATGATGTATTATTATATTCATAATCACACTCTTACTGTACCTGAATTCAATTCACTGTCAATTTAAACATTTTGCAAAAACATGA
>XM_021621711.2
tttattCAGGCGAAAAATGTGTCAAATGGCTTCAGCATGGCAAAGCGTTCAGTCCATGCACCAGTGGATGTTGGAGAATGGAGATAAGAGGACAGATCCATGGTTACTGGTCTACTCCCCCATGCCAGTGGCTTCTATATTCCTCCTCTATCTCGGTGTGGTCTGGGCTGGGCCCAAGCTGATGAAACACAGGCAACCTGTTGACCTCAAGGCTGTGCTCATTGTCTACAACTTCGCCatggtctgcctgtctgtctacatGTTCCACGAGTTCTTGGTCACGTCCATGCTGTCTAACTACAGTTACTTGTGTCAACCTGTGGATTACAGCACTAGCCCACTGGCGATGAGGATGGCCAAAGCATGCTGGTGGTTTTTCTTCTCCAAGGTCATAGAATTGGCTGACACGGTGTTTTTCATCCTGAGGAAGAAAAACAGCCAGCTGACCTTCCTGCATGTCTATCACCATGGCACCATGATCTTCAACTGGTGGGCAGGGGCGAAGTACCTGGCTGGAGGCCAATCGTTCTGCATCGGTCTTCTCAACACCTTCGTCCACACTGTAATGTACTCCTACTACGGACTGGCTGCTCTTGGGCCTCACATGCAGAAGTACTTATGGTGGAAACGCTATCTGACGTCACTTCAGCTGCTCCAGTTTGTCCTGCTGACAACTCACACGGGCTACAACCTCTTCACTGAGTGTGACTTCCCAGACTCCATGAATGCCTATgtgtttttctactgtgtcagcCTCATCCTACTCTTCAGCAACTTCTACTATCAGAGCTACCTCAGCAGGAAGAGCAAGAAGACGTGAAGGAtatggccgtgaccccactctccgagggtgtctcagggcgagttgggatatgcaaagagaaacacatttccaattgAATAGGACAAATACAAGCACCCACCAAATGATGTATTATTATATTCATAATCACACTCTTACTGTACCTGAATTCAATTCACTGTCAATTTAAACATTTTGCAAAAACATGA

Function

NR:

description
elongation of very long chain fatty acids protein 4-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943199.1 False 1043 mRNA 0.48 8 12484686 12496762
XM_021621786.2 False 1115 mRNA 0.48 8 12485638 12496762
XM_036943345.1 False 973 mRNA 0.48 7 12485716 12496762
XM_021621711.2 True 1011 mRNA 0.48 8 12485806 12496762

Neighbor

gene id symbol gene type direction distance location
armh1 cssa16h1orf228 coding upstream 11628 12460957 ~ 12473058 (+)
LOC110525067 LOC106574005 coding upstream 172047 12257968 ~ 12312639 (+)
LOC110535487 NA coding upstream 231155 12250169 ~ 12253531 (+)
mindy4 fam188b coding upstream 319514 12154422 ~ 12165172 (+)
LOC110535183 LOC106574001 coding upstream 337350 12115086 ~ 12147336 (+)
LOC110536612 LOC106574016 coding downstream 179971 12676733 ~ 12695295 (+)
LOC110536795 tnni3k coding downstream 205911 12702673 ~ 12765497 (+)
LOC110536960 LOC106613985 coding downstream 293445 12790207 ~ 12802143 (+)
LOC110537039 LOC106574022 coding downstream 398652 12895414 ~ 12934612 (+)
ptgfr ptgfr coding downstream 514777 13011539 ~ 13016203 (+)
G11140 NA non-coding upstream 46892 12437565 ~ 12437794 (+)
G11137 NA non-coding upstream 50173 12433464 ~ 12434513 (+)
G11130 NA non-coding upstream 68654 12415311 ~ 12416032 (+)
G11127 NA non-coding upstream 73850 12410597 ~ 12410836 (+)
G11422 NA non-coding downstream 372636 12869398 ~ 12870186 (+)
G11475 NA non-coding downstream 442051 12938813 ~ 12939019 (+)
G11494 NA non-coding downstream 465798 12962560 ~ 13002364 (+)
G11500 NA non-coding downstream 476930 12973692 ~ 12998589 (+)
G11539 NA non-coding downstream 547073 13043835 ~ 13044050 (+)
LOC110523899 LOC106574090 other upstream 970304 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 2323400 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 2493144 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3024733 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 4228808 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 741851 13238613 ~ 13295452 (+)
G12410 NA other downstream 1132101 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 1695694 14192456 ~ 14214939 (+)
G13380 NA other downstream 2182588 14679350 ~ 14679578 (+)
G13381 NA other downstream 2182936 14679698 ~ 14680027 (+)

Expression


Co-expression Network