LOC110537039 (LOC106574022)


Basic Information

Item Value
gene id LOC110537039
gene name LOC106574022
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12895414 ~ 12934612 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944295.1
AGAACTGATGTACTGTATCAGCGCTAATCCGCTACATTGAGGCATGCGCTCGTTTCACTGGTAGAAAGTCAGGTATTATTTGGCGCAATAGTGGATGGGCTGCAACGTTTTCAGCAACGTGGATGCTCGGGCATCTAAACCTTTGATGTAAAGTGGACAATTTACGGAAGACATCCACAAAATGAAGACACTAgtgTGCCATGGGGTTATCGGCATTATCGTTATTACCATGGGTACCATTCTTATGGTTGTGTACAACAACAGCTTCACCGAGACGTCAGAGTTTCATTCAGAGAAGCCCGGGAAAGCGCAGCCTAAACCACCAAGAGCCCTATCATCAACTCTAGAGGGCTACACTGGACTCATCAATCAACAGcctctgAGGATGCACTGTAACTGCTGTGCCCTGGTGTCCAGCTCGGGCCACCTTACTGGCAGCAACCGAGGAGACGAAATTGACCGCACCGAATGCGTCATCCGCATGAACAATGCCCCAAACGGAAACAATTTCAAACAGGATGTGGGCAGGCGCACTAGCCTGCGCGTCATCGCCCACTCCAGCGTGCAGAGGGTGCTGCAGAGACGGCAGGAGCTGCTCAACACCAACCAGgactctgtcttcctcttctgggGACCCACCAGCTCCATGCGGCGCGACGGCAAGGGCAGGGTCTTCAACAATCTGCGTCTGATCAACCAGCTGCTTCCCAAGCTCAAGGTCTACGTCATCTCCCCCCTCAAGATGCTGGAGTTTGACGAGCTCTTCAAAAATGAAACGGGAAAAGACAGGAAGACCTCTAAATCGTGGCTGACCACTGGCTGGTTCACCATGGCCATTGCCCTGGAACTGTGTGACAGGGTCAATGTCTATGGCATGGTGGCTCCGGACTTCTGCAGTACTCCCTCTCATCTCTCGGTGCCGTATCATTACTATGAGCCCTCTGGCCCAGACGAGTgctccctgtatctctcccacGAGCACAACCAGAGCGGCGGCCACCACAGCTTCATCACGGAGAAAACGGTGTTCGCCAACTGGGCCCAGAAGTATGACATCCACTTCTACCAGCCAGACTGGATCCCGTCCTCCACTCTCAATGGAAGGAgctcacacacacctgctacaGCTGTCTCCTGATACCAGacaaacagtcagacagacagacagaaacgtCCACAGGACCAgtggtgacccgtcattcagggcaggtggggaagagcaccacctgttttgagccccacctgtttatcAAAAAAAGGATTATACATTTTTTCCTCCCCCTGTTTGCATGttgttttggcattaatacgtgtcacatatcagtttctaaacaatgtaaaaaaataaatatataattgagttaataa

Function

NR:

description
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5-like

GO: NA

KEGG:

id description
K03375 SIAT7E, ST6GalNAc V; N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7E)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944295.1 True 1368 mRNA 0.51 5 12895414 12934612

Neighbor

gene id symbol gene type direction distance location
LOC110536960 LOC106613985 coding upstream 93271 12790207 ~ 12802143 (+)
LOC110536795 tnni3k coding upstream 129917 12702673 ~ 12765497 (+)
LOC110536612 LOC106574016 coding upstream 200119 12676733 ~ 12695295 (+)
LOC110536107 LOC106574012 coding upstream 398652 12484686 ~ 12496762 (+)
armh1 cssa16h1orf228 coding upstream 422356 12460957 ~ 12473058 (+)
ptgfr ptgfr coding downstream 76927 13011539 ~ 13016203 (+)
btf3l4 LOC105028135 coding downstream 99749 13034361 ~ 13047924 (+)
zfyve9b LOC106574024 coding downstream 113829 13048441 ~ 13062930 (+)
LOC110537958 LOC106574029 coding downstream 159062 13093674 ~ 13104588 (+)
mknk1 LOC106574026 coding downstream 169892 13104504 ~ 13115472 (+)
G11422 NA non-coding upstream 25228 12869398 ~ 12870186 (+)
G11140 NA non-coding upstream 457620 12437565 ~ 12437794 (+)
G11137 NA non-coding upstream 460901 12433464 ~ 12434513 (+)
G11130 NA non-coding upstream 479382 12415311 ~ 12416032 (+)
G11475 NA non-coding downstream 4201 12938813 ~ 12939019 (+)
G11494 NA non-coding downstream 27948 12962560 ~ 13002364 (+)
G11500 NA non-coding downstream 39080 12973692 ~ 12998589 (+)
G11539 NA non-coding downstream 109223 13043835 ~ 13044050 (+)
G11574 NA non-coding downstream 217392 13152004 ~ 13152991 (+)
LOC110523899 LOC106574090 other upstream 1381032 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 2734128 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 2903872 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3435461 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 4639536 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 304001 13238613 ~ 13295452 (+)
G12410 NA other downstream 694251 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 1257844 14192456 ~ 14214939 (+)
G13380 NA other downstream 1744738 14679350 ~ 14679578 (+)
G13381 NA other downstream 1745086 14679698 ~ 14680027 (+)

Expression


Co-expression Network