btf3l4 (LOC105028135)


Basic Information

Item Value
gene id btf3l4
gene name LOC105028135
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13034361 ~ 13047924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624163.2
CTGTTTTCTCAGCGGCAGTCGTGTTAGCTGCAGTCTCATCGCTGAAACAAAGACGATTCCGTGGAGTTGTTCGAGGACGGAAAGATAAGGAAACGTTAGTAACATGAACCAAGAAAAATTAGCGAAACTTCAAGCCCAGGTCCGGATAGGAGGAAAGGGCTCGGCACGTAGGAAGAAGAAGGTCGTACACAGAACGGCAACAGCCGATGACAAAAAACTTCAGAGTTCGCTAAAGAAATTAGCTGTCAACAACATTGCTGGTATTGAAGAGGTAAACATGATCAAGGATGACGGCACGGTGATCCACTTCAACAACCCCAAAGTGCAGGCATCTCTGTCGGCCAACACCTTCGCTATCACTGGCCACGCCGAGACCAAGCAGCTCACAGAGATGCTCCCGGGCATCCTCAGTCAGCTGGGTGCCGACAGCCTCACCAGCCTGCGTAAACTGGCAGAGCAGTTCCCTCGGCAAGtGCTCGACAACAAAGCCCCTAAAGCAGAAGATATTGAAGAAGAAGATGATGATGTTCCAGACCTGGTGGAGAATTTTGACGAAGCATCAAAGAACGAGGCAAACTGATTGATCTTCCCCCTCGAGACCCGAAACAAGGATTGGAATTGCAATTAAGAAAGGCGACTTCTCCTGTGTTTTAACTTTTAGCTATGAAGGCATATCATTTCAAGCACTATCCCGTCAGCCGGAGACTTGTGTATTTTGAAATGGCCCACGGATGCAGCCCTTATCAGACTGGCTTGCGCACTTAAACTCCCAACACATTGGTCAACAGTTCAGTACTTTTGCACCACATTGTCAGTCTCGATCAGGATTGCGGTGGTCTTTAAATAAAGCTAGTCTTCAGAGTTTTTTTGTTTATGAAACAAAATAAAGGTGATTAACATTTTG
>XM_036944948.1
CTGTTTTCTCAGCGGCAGTCGTGTTAGCTGCAGTCTCATCGCTGAAACAAAGACGATTCCGTGGAGTTGTTCGAGGACGGAAAGATAAGGTTTCattcacaccactctctcacttgAGAAACGTTAGTAACATGAACCAAGAAAAATTAGCGAAACTTCAAGCCCAGGTCCGGATAGGAGGAAAGGGCTCGGCACGTAGGAAGAAGAAGGTCGTACACAGAACGGCAACAGCCGATGACAAAAAACTTCAGAGTTCGCTAAAGAAATTAGCTGTCAACAACATTGCTGGTATTGAAGAGGTAAACATGATCAAGGATGACGGCACGGTGATCCACTTCAACAACCCCAAAGTGCAGGCATCTCTGTCGGCCAACACCTTCGCTATCACTGGCCACGCCGAGACCAAGCAGCTCACAGAGATGCTCCCGGGCATCCTCAGTCAGCTGGGTGCCGACAGCCTCACCAGCCTGCGTAAACTGGCAGAGCAGTTCCCTCGGCAAGtGCTCGACAACAAAGCCCCTAAAGCAGAAGATATTGAAGAAGAAGATGATGATGTTCCAGACCTGGTGGAGAATTTTGACGAAGCATCAAAGAACGAGGCAAACTGATTGATCTTCCCCCTCGAGACCCGAAACAAGGATTGGAATTGCAATTAAGAAAGGCGACTTCTCCTGTGTTTTAACTTTTAGCTATGAAGGCATATCATTTCAAGCACTATCCCGTCAGCCGGAGACTTGTGTATTTTGAAATGGCCCACGGATGCAGCCCTTATCAGACTGGCTTGCGCACTTAAACTCCCAACACATTGGTCAACAGTTCAGTACTTTTGCACCACATTGTCAGTCTCGATCAGGATTGCGGTGGTCTTTAAATAAAGCTAGTCTTCAGAGTTTTTTTGTTTATGAAACAAAATAAAGGTGATTAACATTTTG
>XM_021624077.2
AGGTTTTATGATACCACGGAAGAAGATATTAGTCATATGGTGAGTTACGTCATTTATCGCTCATAGTCATCCTCCATCTTTCGCTGTCGCATGCTTCCTCGGATATCTTCGGATCAGGAAACGTTAGTAACATGAACCAAGAAAAATTAGCGAAACTTCAAGCCCAGGTCCGGATAGGAGGAAAGGGCTCGGCACGTAGGAAGAAGAAGGTCGTACACAGAACGGCAACAGCCGATGACAAAAAACTTCAGAGTTCGCTAAAGAAATTAGCTGTCAACAACATTGCTGGTATTGAAGAGGTAAACATGATCAAGGATGACGGCACGGTGATCCACTTCAACAACCCCAAAGTGCAGGCATCTCTGTCGGCCAACACCTTCGCTATCACTGGCCACGCCGAGACCAAGCAGCTCACAGAGATGCTCCCGGGCATCCTCAGTCAGCTGGGTGCCGACAGCCTCACCAGCCTGCGTAAACTGGCAGAGCAGTTCCCTCGGCAAGtGCTCGACAACAAAGCCCCTAAAGCAGAAGATATTGAAGAAGAAGATGATGATGTTCCAGACCTGGTGGAGAATTTTGACGAAGCATCAAAGAACGAGGCAAACTGATTGATCTTCCCCCTCGAGACCCGAAACAAGGATTGGAATTGCAATTAAGAAAGGCGACTTCTCCTGTGTTTTAACTTTTAGCTATGAAGGCATATCATTTCAAGCACTATCCCGTCAGCCGGAGACTTGTGTATTTTGAAATGGCCCACGGATGCAGCCCTTATCAGACTGGCTTGCGCACTTAAACTCCCAACACATTGGTCAACAGTTCAGTACTTTTGCACCACATTGTCAGTCTCGATCAGGATTGCGGTGGTCTTTAAATAAAGCTAGTCTTCAGAGTTTTTTTGTTTATGAAACAAAATAAAGGTGATTAACATTTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K01527 EGD1, BTF3; nascent polypeptide-associated complex subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624163.2 False 904 mRNA 0.47 6 13034361 13047924
XM_036944948.1 False 932 mRNA 0.47 6 13034361 13047924
XM_021624077.2 True 932 mRNA 0.46 6 13044795 13047924

Neighbor

gene id symbol gene type direction distance location
ptgfr ptgfr coding upstream 18158 13011539 ~ 13016203 (+)
LOC110537039 LOC106574022 coding upstream 99749 12895414 ~ 12934612 (+)
LOC110536960 LOC106613985 coding upstream 232218 12790207 ~ 12802143 (+)
LOC110536795 tnni3k coding upstream 268864 12702673 ~ 12765497 (+)
LOC110536612 LOC106574016 coding upstream 339066 12676733 ~ 12695295 (+)
zfyve9b LOC106574024 coding downstream 517 13048441 ~ 13062930 (+)
LOC110537958 LOC106574029 coding downstream 45750 13093674 ~ 13104588 (+)
mknk1 LOC106574026 coding downstream 56580 13104504 ~ 13115472 (+)
LOC110538273 LOC106574027 coding downstream 69395 13117319 ~ 13118363 (+)
LOC110526761 LOC106574030 coding downstream 166847 13214771 ~ 13223903 (+)
G11494 NA non-coding upstream 31997 12962560 ~ 13002364 (+)
G11500 NA non-coding upstream 35772 12973692 ~ 12998589 (+)
G11475 NA non-coding upstream 95342 12938813 ~ 12939019 (+)
G11422 NA non-coding upstream 164175 12869398 ~ 12870186 (+)
armh1 cssa16h1orf228 non-coding upstream 568029 12460957 ~ 12473058 (+)
G11574 NA non-coding downstream 104080 13152004 ~ 13152991 (+)
G11586 NA non-coding downstream 133888 13181812 ~ 13182548 (+)
G11999 NA non-coding downstream 162540 13210464 ~ 13210813 (+)
G12000 NA non-coding downstream 163184 13211108 ~ 13211689 (+)
LOC110523899 LOC106574090 other upstream 1519979 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 2873075 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3042819 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3574408 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 4778483 8255142 ~ 8271732 (+)
LOC110538561 LOC106574035 other downstream 190689 13238613 ~ 13295452 (+)
G12410 NA other downstream 580939 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 1144532 14192456 ~ 14214939 (+)
G13380 NA other downstream 1631426 14679350 ~ 14679578 (+)
G13381 NA other downstream 1631774 14679698 ~ 14680027 (+)

Expression


Co-expression Network