LOC110526761 (LOC106574030)


Basic Information

Item Value
gene id LOC110526761
gene name LOC106574030
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13214771 ~ 13223903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945550.1
CGTTAGATGGCAACTCTCGGTATTCTCCAACGACTGGAGAGTGAGAGCACCGCGCGCAGAAAACGGACTACAGTATTCCTGAGGCGTTTGAGTTTAAAAAAATGAGTATACAGGACTAAACAGCACGGAATTGAGAAGTAATATACAAGGTGATACTTTGAAAGCTAATATTCCATTTGAAAACAGCCGGACATAGGCTATAGGCCAAGACCCCACGGGCAGCGTACGTAAGAGGTGACAGCAGCCATGCAGCACTACGGAGTGAATGGATATTCTCTCCACGCCATGAACTCACTAAATGCCATGTACAATCTTCACCAGCAGGCGGCGCAGCATGCCCAGCACGCGCCCGACTACCGGCCGTCCGTGCACGCGCTCACGCTGGCAGAGAGACTGGCTGACATAATCCTCGAGGCCCGGTATGGCTCCCAGCACAGGAAGCAGCGGCGCAGTCGCACAGCCTTCACTGCCCAGCAGCTGGAGGCCCTGGAAAAGACCTTCCAGAAGACCCACTACCCTGACGTGGTGATGCGCGAACGCCTGGCCATGTGTACCAACTTACCAGAGGCCCGTGTGCAGGTGTGGTTCAAGAACCGCCGCGCCAAGTTCCGCAAGAAGCAGCGCAGCCTGCAGAAGGAGCAGCTCCAGAAACAGACCAACAGAGAGGGAGGTGACGAGGAAGAGGTCAAGACCACCGACCCTTCCACCCagacatctccatctccatcctccctctcggAGACCATGCGGCCCCAGCCTGCGGAGATGAGTGTGGAGGTGAACGTCACCTCCCCGGAGGCCTCGGACAGCGAGTCGGCTGCAGAGGACAACGGTGAGGGAGATGAGGAGCtgaagtgggagaggctgcaggaTACTCATCAGTATCAGCATCAGGGGGAGGTGCAGCAGGGGGGTGCAGGGCTGCAGCCGGGAGGAGGATCTCCATCCTGCAAACGCTTCAGCCCCACACCAGactctccctccctcccctcctctagcGGTGGCAGCAGTTGTGTGTCCCAAGGCTCCTATGCCTCGTCCCCCCTCAGCCTCTTCCGTCTGCAGGAGCAGTTCCGCCAGCACATGGCTGCAACCAACAACGTGGTCCACTACCCCTCCTTCGACATGAGTACCCCCTCCTCCCTGCCCTACCTGGGCATGAACGTCAACATGCCCTCCCCCCTGGGCTCTCTGCCCTGCCAATCTTACTACCAGTCCCTGTCCCAGGCGTCCATGTCCCAAGTGTCCATGTCCCAGGCCCAGCAGGTGTGGAACAGCCCCTTGACGGGTCTCCAGGCCCCTCCGAGCAGCCTACCCAGCCTCAACAGCAAGACCACCAGCATCGAGAACCTGCGTCTGAGGGCCAAGCAGCACGCTGCCTCCCTGGGCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTAACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTAACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCcagactgaccccccccccccacagggcAGGGCAGCTAACTGGGACACAATCAGATGTTATGACCCTTTCTACTGACTGGACATTATAGACACTGCACCagtgtctacactacactacagtacactgggaCTGCACATTAGATAAGAACCCTACCGGACTATACTTATTTTGACACCCTTGCAGGTGAGATACATACACCCAGTGCAATCTcactactatactgaacaaaaatataaatggaacatgtaaagtgttggtcccatgtttcatgagttcaaataaaatatcccagaaatgttccatacgcacaaaaagcaaatttcatggtcaaatttgtttgcatccctgttaatgagcatttctcctttgccaagataatccatccacctgataggtgtggcatatcaagaagctgattaaaaagcatgatcattacacaggtgcatcttgtgctggggacaataaaaggtaactctaaaatgtgcagttttgtcacacaacacaatgccacagatgtctcaagttgagggagtgtgcaattggcatgctaactacAAGAATGTCCACTAGAGCGGTTGTCAGAGaattcaatgttaatttctctaccataagccacctcgaacattgttttagagaatctggcagtacgtccaaccggcctcacaaccgcaggccacgtgtaactacgccaacccaggacctccacatccggcttcttcacctgctggatcgtccgagaccagccacctggacagctgatgaaactgaggagtatttctgtctgtaattaaaGCTCTTTTGTGGTGAAAAAGTAATTCTGATTGgttaggcctggctccccagtgggtgggcctgactCCCAAGTGGTTGGGCCATTgccttcccaggcccacccatggctgcacccctgcccagtcatgggaaatcgatagattagggcccaatgaattgatttcaattgactgatttccttatatgaacagtaactgggtaaaatcgttgaaattgatGCATGTtcggtttatatttttgttcagtatacttcctACCAAACCAGCTTGATCAGACTTCAAATGCTACACTCCTAAATCACAAAGCCGTCATCTCACATGGGGCAAATGCATTATGGTcgtctacagtatatctgatgATCTCAACACTAGAAGTGGTGAGGGTGACCATAATATTAAAGATGAGCTTTGCATGCATCCTGAGACAGGGATTACAACAGCACAAAGATAGAAATGGTACAAAGATTGAATCAAGATTCCAGCCTCAGATGAAAACTCCCATTCAAACATTTACAACAGGACAGACCTGCCAGTTCAATAGCCTACAAATCCCACAATGCCCTGCACCTGGCAGAAGGACAGTACTTCCTGTTTTAGAGCTAcatccagagaggaagaggcgaagcaagaAGGTTCACtccgcccaaaatctgtccacgaaaACAAAACTAGGGAGacatttttgtatggaggtcaatgagtgttGAATTTGGTGAACAAAAaacacggccccatgttgcaaggatctgtacacaattcctggaagctgaaaatgtcccagttctcaccagacatgtcacgtattgagcatgtttgggatgttctggatcgacgtgtatgacagcaggttccagttcccgacaatatccagcaacttcgcacaaccattgtagaagagtgggacaacatatTTTACAGGTCACAagcagcctgatcaactatgGGAAAGagatgtcacgctgcatgaggcaaatggtggtcacaccagatactaggTTAATAGGTAATAGATAATAGGTTTTCTGATCtgtgcccctacctttttttaaggtatctgtgaccaacagatgcatatctgtattcccagtcatgtgaaacccatagattagggcctaatgaatttatttcaattgactgatttccttatatgaactgtaactgaaATGGTTGaattttgcatttatatttttgttcagtgtaactaCGCATCCCTCCCAAATACATGATAACTGTTAACACAATACACAATTAACTTTCCATGTTACGCAAACATGCACAGAGCTGAAGTCCCGGTTTCAGGACTGGTctcaaacagaacacacacacatagcccaTGTCACTTGTCCACCGAATGCAGAGTAACTAATCCTAAAGGAAATGACTGAAGCACAGTGTCAGGCTCTAAAGAGTCCCCAATCCCCTTCCTCCACGTCCCTTCTCGGCCCTGTCAGTCAAGGTTTGGCTGCACCGAAACAGAATGCTTTGCCATAAGAAGGATTACCTTGGGTTGGGATATCGATGGATTAAGTAAGAATAGAATAAGATGAAATAGAACTGAAAGGGTTCCTAGAGTTTACCATGGTCCACCCTCTCACTCCCTCAACCCATAAAATCAGAAATCTCTGTCCCACTTATGTAACGGAAGGATATCAAGTTGCAGAGTACATAAaaacgatttaaaaaaaatcaatacaAATAAAAACTTCCTCTGTCATTTCAAATCTTTTGTTGATATTAAAAATCCTGCCAGAGAAATATTGGGTTGTTCAAGCCTGTGATTATGTGGTCATGTTACGTTAATCAGTGGGGTTTGTGTATGTACACACATTTGTATATCAC
>TU14196
actacactacagtacactgggaCTGCACATTAGATAAGAACCCTACCGGACTATACTTATTTTGACACCCTTGCAGGTGAGATACATACACCCAGTGCAATCTcactactatactgaacaaaaatataaatggaacatgtaaagtgttggtcccatgtttcatgagttcaaataaaatatcccagaaatgttccatacgcacaaaaagcaaatttcatggtcaaatttgtttgcatccctgttaatgagcatttctcctttgccaagataatccatccacctgataggtgtggcatatcaagaagctgattaaaaagcatgatcattacacaggtgcatcttgtgctggggacaataaaaggtaactctaaaatgtgcagttttgtcacacaacacaatgccacagatgtctcaagttgagggagtgtgcaattggcatgctaactacAAGAATGTCCACTAGAGCGGTTGTCAGAGaattcaatgttaatttctctaccataagccacctcgaacattgttttagagaatctggcagtacgtccaaccggcctcacaaccgcaggccacgtgtaactacgccaacccaggacctccacatccggcttcttcacctgctggatcgtccgagaccagccacctggacagctgatgaaactga
>TU14195
tccagcaacttcgcacaaccattgtagaagagtgggacaacatatTTTACAGGTCACAagcagcctgatcaactatgGGAAAGagatgtcacgctgcatgaggcaaatggtggtcacaccagatactaggTTAATAGGTAATAGATAATAGGTTTTCTGATCtgtgcccctacctttttttaaggtatctgtgaccaacagatgcatatctgtattcccagtcatgtgaaacccatagattagggcctaatgaatttatttcaattgactgatttccttatatgaactgtaactgaaATGGTTGaattttgcatttatatttttgttcagtgtaactaCGCATCCCTCCCAAATACATGATAACTGTTAACACAATACACAATTAACTTTCCATGTTACGCAAACATGCACAGAGCTGAAGTCCCGGTTTCAGGACTGGTctcaaacagaacacacacacatagcccaTGTCACTTGTCCACCGAATGCAGAGTAACTAATCCTAAAGGAAATGACTGAAGCACAGTGTCAGGCTCTAAAGAGTCCCCAATCCCCTTCCTCCACGTCCCTTCTCGGCCCTGTCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945550.1 False 4344 mRNA 0.50 5 13214771 13223903
TU14196 False 661 lncRNA 0.49 1 13221381 13222041
TU14195 True 585 lncRNA 0.44 1 13222931 13223515

Neighbor

gene id symbol gene type direction distance location
LOC110538273 LOC106574027 coding upstream 96408 13117319 ~ 13118363 (+)
mknk1 LOC106574026 coding upstream 99299 13104504 ~ 13115472 (+)
LOC110537958 LOC106574029 coding upstream 110183 13093674 ~ 13104588 (+)
zfyve9b LOC106574024 coding upstream 151841 13048441 ~ 13062930 (+)
btf3l4 LOC105028135 coding upstream 166847 13034361 ~ 13047924 (+)
LOC110538561 LOC106574035 coding downstream 36008 13238613 ~ 13295452 (+)
LOC110485223 LOC106574083 coding downstream 185379 13409282 ~ 13411290 (+)
LOC110485322 LOC106574039 coding downstream 201663 13425566 ~ 13431117 (+)
pdzk1ip1 LOC106574040 coding downstream 212113 13436016 ~ 13441528 (+)
tm2d1 LOC106574044 coding downstream 510860 13734763 ~ 13753675 (+)
G12000 NA non-coding upstream 3082 13211108 ~ 13211689 (+)
G11999 NA non-coding upstream 3958 13210464 ~ 13210813 (+)
G11586 NA non-coding upstream 32223 13181812 ~ 13182548 (+)
G11574 NA non-coding upstream 61780 13152004 ~ 13152991 (+)
G11539 NA non-coding upstream 170721 13043835 ~ 13044050 (+)
G12007 NA non-coding downstream 5872 13229775 ~ 13231234 (+)
G12015 NA non-coding downstream 18063 13241966 ~ 13242503 (+)
G12014 NA non-coding downstream 25241 13249144 ~ 13253879 (+)
G12029 NA non-coding downstream 61339 13285242 ~ 13285464 (+)
G12030 NA non-coding downstream 61595 13285498 ~ 13285793 (+)
LOC110523899 LOC106574090 other upstream 1700389 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3053485 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3223229 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3754818 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 4958893 8255142 ~ 8271732 (+)
G12410 NA other downstream 404960 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 968553 14192456 ~ 14214939 (+)
G13380 NA other downstream 1455447 14679350 ~ 14679578 (+)
G13381 NA other downstream 1455795 14679698 ~ 14680027 (+)

Expression


Co-expression Network