LOC110485223 (LOC106574083)


Basic Information

Item Value
gene id LOC110485223
gene name LOC106574083
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13409282 ~ 13411290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556316.2
CTTGATCTGTGGTGGTTTGGTCTCTTGCGCATCAACTTGAGAAAGCCGACAGTGCATTATAAAGGGAGAACGGACAGTTCATTACAACGAAAGCGCCGCATATATTGGCCCAAAAATAacaaatctttttttttgtttttttgtccgGCCTTTGTCCGGTCTTACGCTGGAGCTGTAGAGGAAGAGATACGTTATGGGGGTGTTTATAACAGAGATACAGTACCTTACCTTCATCACAACTCCCCTGTCCTCGTATCATTGTGTAGCCTAGCAGGGACAGTGAGGCCATCACGCTAAACCATTATGACGGGTACGACAGATTTCAGCCATGCCATGGGCGATATTGAAACCAACGACGCCGATTACGAATATGATGAGGGTTATACAGACGAGGTCTGTAACAAGAACGGCGTTGTCAAGTTTGGCTCCATCGCCACCCCTGCCTTCTTCTCTGTGGTGACTATCCTGAGTCTAGCGGGCAACATCCTGGTCCTGGCCATCCTGGCCAAGTACGAGAACCTCAAGTCTCTCACCAACATCTTCATCCTCAACTTGGCCCTATCTGACCTGGTTTTCACCTTTGGTCTGCCCTTCTGGGCAGCCTACCACATCTGGGGCTGGACCTTTAGCCTGATCCTCTGCAAGACCGTTACCTTTGTCTTCTACGCTGGCTTCTACAGCAGCGTTTTGTTCCTGACCATCATGACTATCCACCGCTACCTGGCCGTGGTGCATCCTCTGTCCGACCATGGTTACCAAAGGGGCTGCTACGGGGTCACAGTCTCTCTCGTCATCTGGGTTGTTAGTTTTGTGGCGGCCGTCCCTGCTTTGATTTTCAGCTCTGTCCAAAAGAACCCCCATGAAGAAGACAACCATTTTTACTGTGAATACTGGGATCCGCTGTGGAAGAGAGTGGGCAGCTACCAACAGAACATCTTCTTCTTGGCTGCTTTTGCAGTGATCGGGTTCTGCTATGTGAGGATATTGAGGACAATCTTCAAGTCAAGGTCACACATGAGGAATCGAACCGTGAAGCTGATCTTCAGTATCGTGGCAGTATTTTTCATTGGCTGGGCGCCTTACAACGTAGTGATATTTCTGAGGTTGTTGACTGACTATTCCGTAGCACCTTTCAATACTTGTGAGGTCAGCACATGGCTTGACTATGGGTTCTATGTGTGTCGACTGATTGCTTTCTCCCACTGCTGTCTCAACCCTGTCTTCTACGCATTTGTTGGGATTAAGTTCAGAAATCACTTGAAGGTGATCTTGCTGAAGCTTTGCCATCGCCAAAGCACCATGGATACACAACAGATTAGATTGCCTAACATTTACTCGATGGGATCAATGTACTAGCACAGGGGTCTTCAATCTTTTCTTGCCCAGGGACCCACGCCAGGCAAACCGGCGACCCAAAATAAGTCACATCTTGTTAAATCAAAATCtaatttattggtcacatacacgtgtttagaagatattattgcgggtgtagtgaaatgcttgtgcttctagctctgacagtgcagtaatatttaacaagtaatatctaacagtttcacaacaactacccaaaatacacgtaaatctaagtaaggaatggattaagaatataAATATATGCCAGAGTGGCATTGGACTAAGATatcgtagaatagtatagaggacaGTTTATacctatgagatgagtaatgcactatttacacacaattaaagtgactaagat

Function

NR:

description
chemokine XC receptor 1-like

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04193 XCR1; XC chemokine receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556316.2 True 1726 mRNA 0.46 2 13409282 13411290

Neighbor

gene id symbol gene type direction distance location
LOC110538561 LOC106574035 coding upstream 113830 13238613 ~ 13295452 (+)
LOC110526761 LOC106574030 coding upstream 185379 13214771 ~ 13223903 (+)
LOC110538273 LOC106574027 coding upstream 290919 13117319 ~ 13118363 (+)
mknk1 LOC106574026 coding upstream 293810 13104504 ~ 13115472 (+)
LOC110537958 LOC106574029 coding upstream 304694 13093674 ~ 13104588 (+)
LOC110485322 LOC106574039 coding downstream 14276 13425566 ~ 13431117 (+)
pdzk1ip1 LOC106574040 coding downstream 24726 13436016 ~ 13441528 (+)
tm2d1 LOC106574044 coding downstream 323473 13734763 ~ 13753675 (+)
LOC110508285 LOC106574085 coding downstream 729206 14140496 ~ 14144946 (+)
LOC110485648 LOC106574045 coding downstream 751095 14162385 ~ 14171600 (+)
G12039 NA non-coding upstream 106045 13303018 ~ 13303237 (+)
G12037 NA non-coding upstream 108433 13300630 ~ 13300849 (+)
G12010 NA non-coding upstream 111166 13297123 ~ 13298116 (+)
G12009 NA non-coding upstream 112316 13295573 ~ 13296966 (+)
G12035 NA non-coding upstream 117591 13291437 ~ 13291691 (+)
G12126 NA non-coding downstream 36974 13448264 ~ 13448757 (+)
G12137 NA non-coding downstream 64613 13475903 ~ 13477133 (+)
G12332 NA non-coding downstream 122654 13533944 ~ 13534149 (+)
G12335 NA non-coding downstream 124823 13536113 ~ 13536354 (+)
G12342 NA non-coding downstream 130163 13541453 ~ 13541669 (+)
LOC110523899 LOC106574090 other upstream 1894900 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3247996 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3417740 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3949329 9450932 ~ 9460358 (+)
G12410 NA other downstream 217573 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 781166 14192456 ~ 14214939 (+)
G13380 NA other downstream 1268060 14679350 ~ 14679578 (+)
G13381 NA other downstream 1268408 14679698 ~ 14680027 (+)
G13391 NA other downstream 1288886 14700176 ~ 14700730 (+)

Expression


Co-expression Network