LOC110485322 (LOC106574039)


Basic Information

Item Value
gene id LOC110485322
gene name LOC106574039
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13425566 ~ 13431117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556420.2
TCGTTCCCCACACTAAGCGCCACACTGGACATGATGTGGAATTATATAAAACCTCACTTCCAGTTTCCACACAGTACGTCAGTGAATCTAAAACCTTAGACATGGACGACCCTCGACAAAATGGCTCCACACATACTCTATCAACAACACTCCGGCTATGGTGACATCAAGGATTAATATCGCCAGATGAGTGGGGTCTTTTCGATGCTCAACTCAGTCAATCTCGGATAAGCCTACCATTAAGCCTTTGCGTTTTTACTAGGCTATTTCATGCATTTTTACGCACGGTCGAATCTATCGAATAGCCGTTGAAATGATGGAAAAACGGAAACCAGAATTTAGGCATCTCAGTCCTATTGTCAATGGGTGCAAGTCCCCACAGCACGACAGCCTGACTACTTCCATAACAGGTCGTGTCAGTGGGGAGGGGGGCGAAGCTGTTAGCGAGACACAGGAAAACACGACTGCGGCGTCGGGGGACTCAGCTGAGAGGAAGCGTGTCCCCAGGGAGCACTGCAACGGGACTATCTTCATTAATGGCGTTTCCAAGGAAACGGCGTACCACAGCGAGCTAAAAAAGTTAGTACCGGTTATCGAATTGGCCAGGGGAGGAGGACCGGTGGATATAAAAGCTAGGGAGCAGACGGCAGACATTAACCACAAGGTACAGACCACGGAGCTGTGCAGACCGCAAATACCCCTGCCACTGGATTCCCGGGACCCGTTGTTGAGCGAAACTCGAATGGTGCAGTTGAGCCCGCTCGCCTTCCCTCTCCCTGCACGAGCGATGCTGTACAGTAACTTTGCTCAACCACTCGCCACAATGAACAGTGGCTATGGTGGCGAGACAGAACAGTATGGCATGTACCCCAGCCATAGGATCAAACGACGACCCGCGCCTTATGAGATTGAAATCAACGATGATAATGGCTCACAGCCTAAAATTGTGCGGCGGATCTTCACCAACAGCCGCGAGCGTTGGCGCCAGCAGAACGTGAACGGCGCGTTCGCTGACCTCCGCCAGCTCATCCCTACCCACCCGCCCGATAAGAAGCTCTCCAAAAACGAGATCCTCCGACTGGCCATGAAGTACATCAACTTCCTGGCCAAGCTACTGGACGACCAGGAAGGTGTGGTGGGGGGCGGCAGTGGTGCTGAGGGGGCCTGGGCTCCCGAGGGCCATGAGGAGAGCCTGGTCCGGGAGGAGCTCCTCCAGGGCATGCTGTCATCCAGCAACTCCAGCTGCGGGAGTCTTCTGGGAGGGGATGGGAGTCCCGACAGCTACACCGAGGACCAGGACTCGTCTGTCGAGTCTCGAACGCAAACCTCCAGGGTTCTCCATCCTCACTCTGGACTCCATATGGACGAACACAACCACAGATGACTCAGCATTTTCCCTATGTGGAGAAGAAAAGAGACAATGTGAGAAGCAGGAGGTTGGCGATTTGGAGCATTTTTCCACCTGGGTAGAGAGGGTGTGTCGAATGGTGATGCATTTGTGTTGTGTACagatttgctctctctcttcttcctgtttcGCTCAATGGCTCTGTCTGTTATTGGCCAATCCAGAGGAGGGTGTGTTCTCTGGTGGAACATGTCCCAGCTGCTGTTGTAAGCAGGTGATGGATTTGGAAGTCATGAAAGTACAAACTAAGttgaaaatatttaaaaacagtGAAGGTATTTATGGAAAAAGGCATGAAATTGCAAAATGATACCTTTTCTTGTCTAAGGTGAAAGTTTGTTTAGGTACACTGCTTGACTCTAAACAAGAATGAGAACTGTGTTCTTAAGTACTACAGACTACTAAATGTAAGTGACTTGTCTTCATTTTAGGGTCCGCTAAAGTTAATTTGAGTTCCTTTAGAACCTAACATTTGGGGTTTATCAAATAATAATGTCCAGACCTGAAGTCCAGAATTGGTTTTCTTGAAGATCACCTCATTAGTTGTTGGATGGCACAGTTAATCCCCAGCACAAATAGTTATTCAGTGAGATAACTGATAATAACCGATAATCGGTCAAGACAAAAAAAAGTGAGGTCTCAGTGTGGCTGTCAATGTTGGGAGAAGAACAAAATGTTTAAAAGTCTACTTGTTAATGTGATATTCACATAAACCACATGGTTGCAATATTTACCATACAAAATGTAATTGAGATAAGTACGacgcaagtgcacacacacacaccattcgaAGTTCAGACACACCATTcgaagttcacacacacacaaaccattcaaagttcacacacacacacacacaccattcgaagttcacacacacacaccattcgaagttcacacacacacacaccattcaaagttcacacacacacacacaccatttgaagttcacacacacacacacaccattcaaagttcacacacacaaacaccattcAAGTTAACTGAGAGCCAAAACAAAGGAGGAAATGATTCCTGTCCAATAACAGAACAATAAAACAACATTATAATATCtctgtatctaaagatatttaAAGACAGGTACAACAAGCATTCCACTTCTAGTGTACATAAAACGGACAATGGAAAAAATGTTCAACTCCTTCTTTCCCTGTAACCACGGTACATTGAGTTTATCCTATTTTTACACATTCACTTCTTTCATTTATCTTTTATTGATAACATTCATAAAGGAAGTGTTTTACCACTGTATTTAACATAATGTACATGCTATTTCAGCATACTATTGAGTAACCAGAATTGGTACCTTTTAATTCTATGATgatataaagtttttttttttgtgtgtgatatTTTGTAGGATAAAACTTTTCCATCTATAAATACATGCAAAGTTATATCTCAGAGAATTGTATGAAaccacaaaataaaaaaaatggagaaaaataaCTTGA

Function

NR:

description
T-cell acute lymphocytic leukemia protein 1 homolog

GO:

id name namespace
GO:0048823 nucleate erythrocyte development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0001525 angiogenesis biological_process
GO:0048844 artery morphogenesis biological_process
GO:0060214 endocardium formation biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0060217 hemangioblast cell differentiation biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0001570 vasculogenesis biological_process
GO:0045603 positive regulation of endothelial cell differentiation biological_process
GO:0003007 heart morphogenesis biological_process
GO:0048368 lateral mesoderm development biological_process
GO:0030878 thyroid gland development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09068 TAL; T-cell acute lymphocytic leukemia protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556420.2 True 2883 mRNA 0.45 4 13425566 13431117

Neighbor

gene id symbol gene type direction distance location
LOC110485223 LOC106574083 coding upstream 14276 13409282 ~ 13411290 (+)
LOC110538561 LOC106574035 coding upstream 130114 13238613 ~ 13295452 (+)
LOC110526761 LOC106574030 coding upstream 201663 13214771 ~ 13223903 (+)
LOC110538273 LOC106574027 coding upstream 307203 13117319 ~ 13118363 (+)
mknk1 LOC106574026 coding upstream 310094 13104504 ~ 13115472 (+)
pdzk1ip1 LOC106574040 coding downstream 4899 13436016 ~ 13441528 (+)
tm2d1 LOC106574044 coding downstream 303646 13734763 ~ 13753675 (+)
LOC110508285 LOC106574085 coding downstream 709379 14140496 ~ 14144946 (+)
LOC110485648 LOC106574045 coding downstream 731268 14162385 ~ 14171600 (+)
LOC110485979 LOC106574047 coding downstream 741402 14172519 ~ 14185257 (+)
G12039 NA non-coding upstream 122329 13303018 ~ 13303237 (+)
G12037 NA non-coding upstream 124717 13300630 ~ 13300849 (+)
G12010 NA non-coding upstream 127450 13297123 ~ 13298116 (+)
G12009 NA non-coding upstream 128600 13295573 ~ 13296966 (+)
G12035 NA non-coding upstream 133875 13291437 ~ 13291691 (+)
G12126 NA non-coding downstream 17147 13448264 ~ 13448757 (+)
G12137 NA non-coding downstream 44786 13475903 ~ 13477133 (+)
G12332 NA non-coding downstream 102827 13533944 ~ 13534149 (+)
G12335 NA non-coding downstream 104996 13536113 ~ 13536354 (+)
G12342 NA non-coding downstream 110336 13541453 ~ 13541669 (+)
LOC110523899 LOC106574090 other upstream 1911184 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3264280 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3434024 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3965613 9450932 ~ 9460358 (+)
G12410 NA other downstream 197746 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 761339 14192456 ~ 14214939 (+)
G13380 NA other downstream 1248233 14679350 ~ 14679578 (+)
G13381 NA other downstream 1248581 14679698 ~ 14680027 (+)
G13391 NA other downstream 1269059 14700176 ~ 14700730 (+)

Expression


Co-expression Network