pdzk1ip1 (LOC106574040)


Basic Information

Item Value
gene id pdzk1ip1
gene name LOC106574040
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13436016 ~ 13441528 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946195.1
GATGTGTGTTCTTTACATGCCAAAAAACACAACTGAGCCACATAGAACAAACCTATTCCGAAGAGTTGCTCACGAGGCCATTTTGGGATCTAAAAACATTTTGTGGATTTTCAGAGTCAACAATGGGGAGAGATCCTACTGTGGTTATATGGCTGATGCTGACTTTGGGAGTAGTCACAGCTCAAATAGATAAGGTGGAGCGGGCACTGCCACAGTGGCTGACAGGCATCATAGCTGTGGCTGTGTTTCTCTTCCTCATCTTCGTGGCGTTTCTGGTCAACAAGGCCTGGTGTCAGGACTCGAGGCCTGACACCAAAGAATGTGAGTGTGGGAAGACCCCTGGGTATGCCAACACCAATGGAGACAGCTATGATACCAGCCTGGACATGTTCAGGAGCAGAGATCACGAGGGTGCATATGAGAACATGGACCTCGAAGGTATTGAAGACAAAGTCACTGTCATGTGACCAATGAGAACCAATAGAAGCCACCAATCTGTGGTTTGTCGtggacgcgcgcacacacacacacacacacacacacacacgtagtttCAGAGACATGCAAAAGCAATTTACCAAGAGCAATCCAAGCAAGTCGCAAAAAGTTTCAAGATCAGTAGATATCCATTAAAGTGAATCTTAGAGTGTAGAATCTTGTCCAACAACTttctgatttgtttaaaaagCTACAGTACATATGGGCCTAATGTGTGATAGAACTCTTAAAAcccattcctgcagtcaaatgaccaaatcgccatctagtggcctcatgggtggaatgttattcatatttttcataatatcataaaacatttttttacatttttttacagaagaaaatctggtgtttctatttCAGATAATTTTGTTATACTGTATTTcaatcttctgtgatgtatataaagtgtaatattggggtgcaaactcaaaatgtaatacattacaACTCTAGATCTGGTATGATACAGGCGTCTTCTTTTTTATAAgctcataaccatgtgtgtgaggtgtatacttttgtttcaaagtagatttgtttaagactccCAAGAAGCACTCTGcatgaccctgatttagcccactgaaGTATTAATAATATACAGACATGAAACATAAAAGGAACAATCCTCATAAAAATGGAAGCAATTGAGATATTCCTTAACAGTGTATCAATGAGACATGGTAGAATGACCTCTtattaaaatacatgtattttaagGACTGAACAGCCACACTTGAAGATCAGAGGGAGGACATGGTGGAAATGGTTGTGGTCCCCTTGCATTTAATAAAACCTCATCATCAAA

Function

NR:

description
PDZK1-interacting protein 1-like

GO:

id name namespace
GO:0030097 hemopoiesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946195.1 True 1312 mRNA 0.40 4 13436016 13441528

Neighbor

gene id symbol gene type direction distance location
LOC110485322 LOC106574039 coding upstream 4899 13425566 ~ 13431117 (+)
LOC110485223 LOC106574083 coding upstream 24726 13409282 ~ 13411290 (+)
LOC110538561 LOC106574035 coding upstream 140564 13238613 ~ 13295452 (+)
LOC110526761 LOC106574030 coding upstream 212113 13214771 ~ 13223903 (+)
LOC110538273 LOC106574027 coding upstream 317653 13117319 ~ 13118363 (+)
tm2d1 LOC106574044 coding downstream 293235 13734763 ~ 13753675 (+)
LOC110508285 LOC106574085 coding downstream 698968 14140496 ~ 14144946 (+)
LOC110485648 LOC106574045 coding downstream 720857 14162385 ~ 14171600 (+)
LOC110485979 LOC106574047 coding downstream 730991 14172519 ~ 14185257 (+)
LOC110486057 NA coding downstream 750939 14192456 ~ 14214939 (+)
G12039 NA non-coding upstream 132779 13303018 ~ 13303237 (+)
G12037 NA non-coding upstream 135167 13300630 ~ 13300849 (+)
G12010 NA non-coding upstream 137900 13297123 ~ 13298116 (+)
G12009 NA non-coding upstream 139050 13295573 ~ 13296966 (+)
G12035 NA non-coding upstream 144325 13291437 ~ 13291691 (+)
G12126 NA non-coding downstream 6736 13448264 ~ 13448757 (+)
G12137 NA non-coding downstream 34375 13475903 ~ 13477133 (+)
G12332 NA non-coding downstream 92416 13533944 ~ 13534149 (+)
G12335 NA non-coding downstream 94585 13536113 ~ 13536354 (+)
G12342 NA non-coding downstream 99925 13541453 ~ 13541669 (+)
LOC110523899 LOC106574090 other upstream 1921634 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3274730 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3444474 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 3976063 9450932 ~ 9460358 (+)
G12410 NA other downstream 187335 13617059 ~ 13666871 (+)
G13380 NA other downstream 1237822 14679350 ~ 14679578 (+)
G13381 NA other downstream 1238170 14679698 ~ 14680027 (+)
G13391 NA other downstream 1258648 14700176 ~ 14700730 (+)

Expression


Co-expression Network