tm2d1 (LOC106574044)


Basic Information

Item Value
gene id tm2d1
gene name LOC106574044
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13734763 ~ 13753675 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946379.1
GTCACGTGACCAAGTGGTCGCGTCGTCAACATGGCGTTTCCCGGAAGTCGGCTGTTCTCTTTACGGACCATGTCGTTGGGCATTTTGTTTTATTGTATGTATTGCCATTTCCAATTTGTTCTCGCAAATGATGTCGATAGTTGTGAAAGTCTACGCCTGGGACAGTATATTTGTAAAGCACCAAGGATAGACGATGCCACTCAAGAACCTGAGAATTGCAAGGACATGATTGCTTGGGTGGAATGCCTACCTTCTCCAAACGTCAGCTGCCGCTTGTCCAATGGGACGGAGTTTCGATTCAGTGGAGAGGAAGTGGGCTTTAACAAAAGCCTCCCTTGCAGgaatgtGAGCGGTTACTCCTACAAAGTAGCGGTGGCCCTGTCGCTCTTCCTGGGATGGTTAGGAGCGGATCGCTTCTACTTGGGATACCCAGCTTTAGggctGCTCAAATTCTGCACAGTTGGCTTCTGTGGGATTGGGAGCTTGGTGGATTTCATGTTGATCTCAATGCAGgTTGTGGGTCCGTCAGATAAGTCTGACTACATAGTGGACTACTACGGTGCCAGACTCACACGCCTCTCCATCACCAATGAGACTTACAGAAGAACCCAGATGTCTCCCTGAAGGACCAAAGTGAAAAACAACTATCATTACCCTCAACCCTGTCATGACGATTATGCCGCTCTTTTTGGGATCTTTTTCACTTGATCATTCCGATACACGGACACTAAGACCATCCCAGTCAACACATTGATCATGATCCTGTCTGCATGTACCCCAATGTGGTGAAGCTCAGCTTTTTAAAATGGATACTCTTAAGAGTGAAGGCTTCATTTTGGTTTAGACTTTACCCAGCATCTCCTTAGTCTTTCCTTCATTCTTTGTGACCTTCATTCCTTGCCACCTCctcaaaacacattttaaaaggAGGAGATGAGGATAGAGATTGCAAATGAATCaaacaaaaacatatatttacCCACGGTCACCAGCTCAGGTCCTGGAACGTTAGAGGAGTACAGACCTTTGTTCCAACCTAGCATTATCACaccctgtagctctccaggaccaaGGACTTGATGACCACTGCCATAGAGCTTCAAATCATCGTTATACTCCTATAAGAATCTAGAATCTGCACCGAGAACAGTTCTGTAAATATGTCATCTATTGTGTTATTTGAGTATGTCTGGCAGCAAGGGAACTATTTATGTTCTGTATGACTGTTTTGTTGATTTGTCATTAGcgatttatttttattatttttttgtaataaaatTGTAATTTTATGAAAATGGA

Function

NR:

description
TM2 domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946379.1 True 1299 mRNA 0.44 7 13734763 13753675

Neighbor

gene id symbol gene type direction distance location
pdzk1ip1 LOC106574040 coding upstream 293235 13436016 ~ 13441528 (+)
LOC110485322 LOC106574039 coding upstream 303646 13425566 ~ 13431117 (+)
LOC110485223 LOC106574083 coding upstream 323473 13409282 ~ 13411290 (+)
LOC110538561 LOC106574035 coding upstream 439311 13238613 ~ 13295452 (+)
LOC110526761 LOC106574030 coding upstream 510860 13214771 ~ 13223903 (+)
LOC110508285 LOC106574085 coding downstream 386821 14140496 ~ 14144946 (+)
LOC110485648 LOC106574045 coding downstream 408710 14162385 ~ 14171600 (+)
LOC110485979 LOC106574047 coding downstream 418844 14172519 ~ 14185257 (+)
LOC110486057 NA coding downstream 438792 14192456 ~ 14214939 (+)
axdnd1 axdnd1 coding downstream 466492 14220167 ~ 14244412 (+)
G12411 NA non-coding upstream 65735 13617745 ~ 13669028 (+)
G12410 NA non-coding upstream 67892 13617059 ~ 13666871 (+)
G12412 NA non-coding upstream 69527 13629753 ~ 13665236 (+)
G12396 NA non-coding upstream 148860 13585704 ~ 13585903 (+)
G12390 NA non-coding upstream 153453 13581105 ~ 13581310 (+)
G12497 NA non-coding downstream 21858 13775533 ~ 13775871 (+)
G12499 NA non-coding downstream 25932 13779607 ~ 13788862 (+)
G12504 NA non-coding downstream 42260 13795935 ~ 13799297 (+)
G12509 NA non-coding downstream 58261 13811936 ~ 13813273 (+)
G12535 NA non-coding downstream 99816 13853491 ~ 13853770 (+)
LOC110523899 LOC106574090 other upstream 2220381 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3573477 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3743221 9980527 ~ 9991542 (+)
G13380 NA other downstream 925675 14679350 ~ 14679578 (+)
G13381 NA other downstream 926023 14679698 ~ 14680027 (+)
G13391 NA other downstream 946501 14700176 ~ 14700730 (+)
G13434 NA other downstream 1058096 14811771 ~ 14812624 (+)

Expression


Co-expression Network