LOC110508285 (LOC106574085)


Basic Information

Item Value
gene id LOC110508285
gene name LOC106574085
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14140496 ~ 14144946 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589094.2
gggtgtgagttggaagcagacccacacacgtcatctctagctgacacctttgctaacagGAATGAGGATCATGTACATGCAGGATGACATGGAAAACCTGAAGGACTCATTCACCATGCAGCTGACAGATGGCTGCCACACAGTCCAGGGGACAGCGAAGATCATCGTCCTACCAGTCAATGATGAAAAACCCCGGCTGCTGAAGAATGCAGGTGTAGAGGTGGACTGGATGGACAGGAAGGTGATCTCCAGTGTGGTGTGGAGGCGAAGACCTGGACACTCGTCCCAGTCAGATCTACTATATCCTCAACGCTGGGCCCAGGTTTGGGAAACTGCAGCTCAAGATGCAAAGCACGGCACCTTCTTCAAATGACACTGAGAATCAACTTATTTAACATGTTGTCCCCAGATACACCCAGCTAGCAcacaacgttctgagaaccatatatgtttcttagagcttggtgagagcgtggttgtcctatggttattttgcatacaaccttcccacaactttcctCATGGTTTTaattaaagtcatgttctcaaattgttcagagaactttaagaaacaacgttcttctgtgggaacaTTACACACAAGTTCCCATGTGGTTCTATTTAATGTTATATTTTTACTACATTCTGGCAAcgttctcaaaaatgttgtgacTTAAGCAATGTTGTCAGAACGTATGGTTCTCTTATGTCAGTTCTTGGCAATATTCggggaatgtaaaaaaaaaaagaaaagaaagaaggaattcagggaaccagagtaaaacaaaCCTAAATATGaaacgttcccagaacaggcaaaaCTTTCtgttttaccggtcaggaaacaTATGTCTTCGTTCTCACAACCAATGTGAAGCCAAAAACATAAGTTCCTACAAAAAaagttcccacaacttccaaggaaccaaatgtgctagatGGGTATGTCACCCACCTGTGCTACTCCTGTCCACCTGTCAAAGCAacattttagtgtgtgtgtgtgtatctatctgCAGGTACTTTAGCAATCACAACGCCAATCAACATACAGTAGTTATTACTTGCAGTTACCAGCGAAAGAAAAGGTAAATAAAGGAATGCATAT

Function

NR:

description
FRAS1-related extracellular matrix protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589094.2 True 1108 mRNA 0.43 3 14140496 14144946

Neighbor

gene id symbol gene type direction distance location
tm2d1 LOC106574044 coding upstream 386821 13734763 ~ 13753675 (+)
pdzk1ip1 LOC106574040 coding upstream 698968 13436016 ~ 13441528 (+)
LOC110485322 LOC106574039 coding upstream 709379 13425566 ~ 13431117 (+)
LOC110485223 LOC106574083 coding upstream 729206 13409282 ~ 13411290 (+)
LOC110538561 LOC106574035 coding upstream 845044 13238613 ~ 13295452 (+)
LOC110485648 LOC106574045 coding downstream 17439 14162385 ~ 14171600 (+)
LOC110485979 LOC106574047 coding downstream 27573 14172519 ~ 14185257 (+)
LOC110486057 NA coding downstream 47521 14192456 ~ 14214939 (+)
axdnd1 axdnd1 coding downstream 75221 14220167 ~ 14244412 (+)
tdrd5 LOC106574052 coding downstream 106443 14251389 ~ 14304106 (+)
G12680 NA non-coding upstream 41205 14099008 ~ 14099291 (+)
G12675 NA non-coding upstream 49145 14090734 ~ 14091351 (+)
G12670 NA non-coding upstream 56520 14083471 ~ 14083976 (+)
G12663 NA non-coding upstream 71810 14068471 ~ 14068686 (+)
G12662 NA non-coding upstream 74630 14065600 ~ 14065866 (+)
G13121 NA non-coding downstream 276459 14421405 ~ 14421630 (+)
G13334 NA non-coding downstream 424153 14569099 ~ 14571242 (+)
G13359 NA non-coding downstream 489017 14633963 ~ 14635553 (+)
G13363 NA non-coding downstream 497417 14642363 ~ 14642610 (+)
G13364 NA non-coding downstream 497784 14642730 ~ 14642996 (+)
G12410 NA other upstream 508606 13617059 ~ 13666871 (+)
LOC110523899 LOC106574090 other upstream 2626114 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3979210 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 4148954 9980527 ~ 9991542 (+)
G13380 NA other downstream 534404 14679350 ~ 14679578 (+)
G13381 NA other downstream 534752 14679698 ~ 14680027 (+)
G13391 NA other downstream 555230 14700176 ~ 14700730 (+)
G13434 NA other downstream 666825 14811771 ~ 14812624 (+)

Expression


Co-expression Network