LOC110485648 (LOC106574045)


Basic Information

Item Value
gene id LOC110485648
gene name LOC106574045
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14162385 ~ 14171600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556786.2
CATTGTTTCCTTACGTCATGTCATTTATGTGCGACGACAGCGAAGGGGGAAAGATGGCGGCCGCCATGGTGCAAATGTCTTGTTTGTACCGTGGGATGCTAGCGGTCAGGGCAACTGGAATCCGACCGCTCATCCCTGGCCTGGTGCCGTCGCAGTTTAGAGCATTTTCTGTGAAGAAGGAGAAAGAGCCGGAACTGGAGGACAATCcatattataataaatatcaggaAAAGATCAGAAAGCTAAGGAGtgCCAAACCGCAGGAGTTCAATGCTCGGCTCGAGAAGCGAAATGAAATTAAACGGGAGCCACTCGGACACTCTAAACAATCAGAGTTCGTCAACCTCATGGAGCAGGAGTTAGAGAAGCGTGACAACCAGGCTGATGGTTCAGGCAGATTCACCAAAGACAAGTTTCTTGCACAGACCCTAGGATCTATCCTGAACTTGGACTTGATCCAGGATAAGTCAGGAGAAGAAATTGCAGAGCTTTGGAGGCAGTATTATGCCACAAAAGACACCATAAGCGCCATCATACCAGCCCACGTTTTTGAAGTGATTTTCAACAGAGCTAAGTGCAACCCTGTGTTCCTGTATGCGTTACCCCAAAAGGAGGGCTATGAATTTTTCCTGGGGCAGTGGTCGGACCACGAACTGCATTTCACGTCCCTGATCAATGTCCAGACCATGGGAGAGCACGCCCCCAGTCAGTTGATCCTCTACCACTATTCTGACCTGCAGAAAGACAAGGGTGTAGTGCTCATGACTGCCGAGATGGACCCTAAGTTCATGACAGTACATCTGGCTCAGTGCTTGGCCAATCAGGTGCAGCTGTTCTACGGAACCCAGCGGCAGGAGATTTTTAGATTGGTGGAGACCTTCAACCACAAACCAGCTGACTTTAAACACATGGCAGTGATTGCTGAGTTGGAACAGAGTGGCGTCAATCCTGCTCTCACCTCTGGAAACTAGATCAAGAGTTGTCAGACGGTGAAATTTTGCTCCAATTTACCAAGGGATTGGCACATGGTCATTCATTTGGCGCCAATCTTGCGTTTGCGAGAATGACGTCTTTTGCTTGGCACTAATCACCTGGTTGACCAGATGCATCAGTCAAAATGTATGCTAAATTCCCGGGCATAGACGATGTAATGAATCAATGTTATTTAATCTTATCAAAGCCTTAAATGTTATTTTTCACCTCTCCCCTGTCCATCTTACTGTTGTACTTGACAGTAGTCTCGTATTCCTGTCAGAACCCAGCCTACAACCCATAAGGCACTCTATACTGTACATAGGCCTCTGGCCAAATGTAATGCACTATGACCCCTTGTGGAAGGTAGTGCTCTATACacagaatagagtgccatttcatGTATGGTGTTCCCCTTCCAAATATTCTTGTTATTTTTAGATAGGATAACTGCAGGAATTTGGTTTTCAAAACAATGGAGTGTACAATGAGGTTTCGTACATAAGTATATTTGTACATataagtaaactcagcaaaaaaataaacgtcctctcactgtcaa
>XM_021556865.2
CATTGTTTCCTTACGTCATGTCATTTATGTGCGACGACAGCGAAGGGGGAAAGATGGCGGCCGCCATGGTGCAAATGTCTTGTTTGTACCGTGGGATGCTAGCGGTCAGGGCAACTGGAATCCGACCGCTCATCCCTGGCCTGGTGCCGTCGCAGTTTAGAGCATTTTCTGTGAAGAAGGAGAAAGAGCCGGAACTGGAGGACAATCcatattataataaatatcaggaAAAGATCAGAAAGCTAAGGAGtgCCAAACCGCAGGAGTTCAATGCTCGGCTCGAGAAGCGAAATGAAATTAAACGGGAGCCACTCGGACACTCTAAACAATCAGAGTTCGTCAACCTCATGGAGCAGGAGTTAGAGAAGCGTGACAACCAGGCTGATGGTTCAGGCAGATTCACCAAAGACAAGACCCTAGGATCTATCCTGAACTTGGACTTGATCCAGGATAAGTCAGGAGAAGAAATTGCAGAGCTTTGGAGGCAGTATTATGCCACAAAAGACACCATAAGCGCCATCATACCAGCCCACGTTTTTGAAGTGATTTTCAACAGAGCTAAGTGCAACCCTGTGTTCCTGTATGCGTTACCCCAAAAGGAGGGCTATGAATTTTTCCTGGGGCAGTGGTCGGACCACGAACTGCATTTCACGTCCCTGATCAATGTCCAGACCATGGGAGAGCACGCCCCCAGTCAGTTGATCCTCTACCACTATTCTGACCTGCAGAAAGACAAGGGTGTAGTGCTCATGACTGCCGAGATGGACCCTAAGTTCATGACAGTACATCTGGCTCAGTGCTTGGCCAATCAGGTGCAGCTGTTCTACGGAACCCAGCGGCAGGAGATTTTTAGATTGGTGGAGACCTTCAACCACAAACCAGCTGACTTTAAACACATGGCAGTGATTGCTGAGTTGGAACAGAGTGGCGTCAATCCTGCTCTCACCTCTGGAAACTAGATCAAGAGTTGTCAGACGGTGAAATTTTGCTCCAATTTACCAAGGGATTGGCACATGGTCATTCATTTGGCGCCAATCTTGCGTTTGCGAGAATGACGTCTTTTGCTTGGCACTAATCACCTGGTTGACCAGATGCATCAGTCAAAATGTATGCTAAATTCCCGGGCATAGACGATGTAATGAATCAATGTTATTTAATCTTATCAAAGCCTTAAATGTTATTTTTCACCTCTCCCCTGTCCATCTTACTGTTGTACTTGACAGTAGTCTCGTATTCCTGTCAGAACCCAGCCTACAACCCATAAGGCACTCTATACTGTACATAGGCCTCTGGCCAAATGTAATGCACTATGACCCCTTGTGGAAGGTAGTGCTCTATACacagaatagagtgccatttcatGTATGGTGTTCCCCTTCCAAATATTCTTGTTATTTTTAGATAGGATAACTGCAGGAATTTGGTTTTCAAAACAATGGAGTGTACAATGAGGTTTCGTACATAAGTATATTTGTACATataagtaaactcagcaaaaaaataaacgtcctctcactgtcaa
>XM_021556939.2
CATTGTTTCCTTACGTCATGTCATTTATGTGCGACGACAGCGAAGGGGGAAAGATGGCGGCCGCCATGGTGCAAATGTCTTGTTTGTACCGTGGGATGCTAGCGGTCAGGGCAACTGGAATCCGACCGCTCATCCCTGGCCTGGTGCCGTCGCAGTTTAGAGCATTTTCTGTGAAGAAGGAGAAAGAGCCGGAACTGGAGGACAATCcatattataataaatatcaggaAAAGATCAGAAAGCTAAGGAGtgCCAAACCGCAGGAGTTCAATGCTCGGCTCGAGAAGCGAAATGAAATTAAACGGGAGCCACTCGGACACTCTAAACAATCAGAGTTCGTCAACCTCATGGAGCAGGAGTTAGAGAAGCGTGACAACCAGGCTGATGGTTCAGGCAGATTCACCAAAGACAAGTTTCTTGCACAGACCCTAGGATCTATCCTGAACTTGGACTTGATCCAGGATAAGTCAGGAGAAGAAATTGCAGAGCTTTGGAGGCAGTATTATGCCACAAAAGACACCATAAGCGCCATCATACCATTCCTGTATGCGTTACCCCAAAAGGAGGGCTATGAATTTTTCCTGGGGCAGTGGTCGGACCACGAACTGCATTTCACGTCCCTGATCAATGTCCAGACCATGGGAGAGCACGCCCCCAGTCAGTTGATCCTCTACCACTATTCTGACCTGCAGAAAGACAAGGGTGTAGTGCTCATGACTGCCGAGATGGACCCTAAGTTCATGACAGTACATCTGGCTCAGTGCTTGGCCAATCAGGTGCAGCTGTTCTACGGAACCCAGCGGCAGGAGATTTTTAGATTGGTGGAGACCTTCAACCACAAACCAGCTGACTTTAAACACATGGCAGTGATTGCTGAGTTGGAACAGAGTGGCGTCAATCCTGCTCTCACCTCTGGAAACTAGATCAAGAGTTGTCAGACGGTGAAATTTTGCTCCAATTTACCAAGGGATTGGCACATGGTCATTCATTTGGCGCCAATCTTGCGTTTGCGAGAATGACGTCTTTTGCTTGGCACTAATCACCTGGTTGACCAGATGCATCAGTCAAAATGTATGCTAAATTCCCGGGCATAGACGATGTAATGAATCAATGTTATTTAATCTTATCAAAGCCTTAAATGTTATTTTTCACCTCTCCCCTGTCCATCTTACTGTTGTACTTGACAGTAGTCTCGTATTCCTGTCAGAACCCAGCCTACAACCCATAAGGCACTCTATACTGTACATAGGCCTCTGGCCAAATGTAATGCACTATGACCCCTTGTGGAAGGTAGTGCTCTATACacagaatagagtgccatttcatGTATGGTGTTCCCCTTCCAAATATTCTTGTTATTTTTAGATAGGATAACTGCAGGAATTTGGTTTTCAAAACAATGGAGTGTACAATGAGGTTTCGTACATAAGTATATTTGTACATataagtaaactcagcaaaaaaataaacgtcctctcactgtcaa
>XM_021557022.2
CATTGTTTCCTTACGTCATGTCATTTATGTGCGACGACAGCGAAGGGGGAAAGATGGCGGCCGCCATGGTGCAAATGTCTTGTTTGTACCGTGGGATGCTAGCGGTCAGGGCAACTGGAATCCGACCGCTCATCCCTGGCCTGGTGCCGTCGCAGTTTAGAGCATTTTCTGTGAAGAAGGAGAAAGAGCCGGAACTGGAGGACAATCcatattataataaatatcaggaAAAGATCAGAAAGCTAAGGAGtgCCAAACCGCAGGAGTTCAATGCTCGGCTCGAGAAGCGAAATGAAATTAAACGGGAGCCACTCGGACACTCTAAACAATCAGAGTTCGTCAACCTCATGGAGCAGGAGTTAGAGAAGCGTGACAACCAGGCTGATGGTTCAGGCAGATTCACCAAAGACAAGACCCTAGGATCTATCCTGAACTTGGACTTGATCCAGGATAAGTCAGGAGAAGAAATTGCAGAGCTTTGGAGGCAGTATTATGCCACAAAAGACACCATAAGCGCCATCATACCATTCCTGTATGCGTTACCCCAAAAGGAGGGCTATGAATTTTTCCTGGGGCAGTGGTCGGACCACGAACTGCATTTCACGTCCCTGATCAATGTCCAGACCATGGGAGAGCACGCCCCCAGTCAGTTGATCCTCTACCACTATTCTGACCTGCAGAAAGACAAGGGTGTAGTGCTCATGACTGCCGAGATGGACCCTAAGTTCATGACAGTACATCTGGCTCAGTGCTTGGCCAATCAGGTGCAGCTGTTCTACGGAACCCAGCGGCAGGAGATTTTTAGATTGGTGGAGACCTTCAACCACAAACCAGCTGACTTTAAACACATGGCAGTGATTGCTGAGTTGGAACAGAGTGGCGTCAATCCTGCTCTCACCTCTGGAAACTAGATCAAGAGTTGTCAGACGGTGAAATTTTGCTCCAATTTACCAAGGGATTGGCACATGGTCATTCATTTGGCGCCAATCTTGCGTTTGCGAGAATGACGTCTTTTGCTTGGCACTAATCACCTGGTTGACCAGATGCATCAGTCAAAATGTATGCTAAATTCCCGGGCATAGACGATGTAATGAATCAATGTTATTTAATCTTATCAAAGCCTTAAATGTTATTTTTCACCTCTCCCCTGTCCATCTTACTGTTGTACTTGACAGTAGTCTCGTATTCCTGTCAGAACCCAGCCTACAACCCATAAGGCACTCTATACTGTACATAGGCCTCTGGCCAAATGTAATGCACTATGACCCCTTGTGGAAGGTAGTGCTCTATACacagaatagagtgccatttcatGTATGGTGTTCCCCTTCCAAATATTCTTGTTATTTTTAGATAGGATAACTGCAGGAATTTGGTTTTCAAAACAATGGAGTGTACAATGAGGTTTCGTACATAAGTATATTTGTACATataagtaaactcagcaaaaaaataaacgtcctctcactgtcaa
>XM_021557088.2
CATTGTTTCCTTACGTCATGTCATTTATGTGCGACGACAGCGAAGGGGGAAAGATGGCGGCCGCCATGGTGCAAATGTCTTGTTTGTACCGTGGGATGCTAGCGGTCAGGGCAACTGGAATCCGACCGCTCATCCCTGGCCTGGTGCCGTCGCAGTTTAGAGCATTTTCTGTGAAGAAGGAGAAAGAGCCGGAACTGGAGGACAATCcatattataataaatatcaggaAAAGATCAGAAAGCTAAGGAGtgCCAAACCGCAGGAGTTCAATGCTCGGCTCGAGAAGCGAAATGAAATTAAACGGGAGCCACTCGGACACTCTAAACAATCAGAGTTCGTCAACCTCATGGAGCAGGAGTTAGAGAAGCGTGACAACCAGGCTGATGGTTCAGGCAGATTCACCAAAGACAAGTTTCTTGCACAGACCCTAGGATCTATCCTGAACTTGGACTTGATCCAGGATAAGTCAGGAGAAGAAATTGCAGAGCTTTGGAGGCAGTATTATGCCACAAAAGACACCATAAGCGCCATCATACCAGCCCACGTTTTTGAAGTGATTTTCAACAGAGCTAAGTGCAACCCTGTGACCATGGGAGAGCACGCCCCCAGTCAGTTGATCCTCTACCACTATTCTGACCTGCAGAAAGACAAGGGTGTAGTGCTCATGACTGCCGAGATGGACCCTAAGTTCATGACAGTACATCTGGCTCAGTGCTTGGCCAATCAGGTGCAGCTGTTCTACGGAACCCAGCGGCAGGAGATTTTTAGATTGGTGGAGACCTTCAACCACAAACCAGCTGACTTTAAACACATGGCAGTGATTGCTGAGTTGGAACAGAGTGGCGTCAATCCTGCTCTCACCTCTGGAAACTAGATCAAGAGTTGTCAGACGGTGAAATTTTGCTCCAATTTACCAAGGGATTGGCACATGGTCATTCATTTGGCGCCAATCTTGCGTTTGCGAGAATGACGTCTTTTGCTTGGCACTAATCACCTGGTTGACCAGATGCATCAGTCAAAATGTATGCTAAATTCCCGGGCATAGACGATGTAATGAATCAATGTTATTTAATCTTATCAAAGCCTTAAATGTTATTTTTCACCTCTCCCCTGTCCATCTTACTGTTGTACTTGACAGTAGTCTCGTATTCCTGTCAGAACCCAGCCTACAACCCATAAGGCACTCTATACTGTACATAGGCCTCTGGCCAAATGTAATGCACTATGACCCCTTGTGGAAGGTAGTGCTCTATACacagaatagagtgccatttcatGTATGGTGTTCCCCTTCCAAATATTCTTGTTATTTTTAGATAGGATAACTGCAGGAATTTGGTTTTCAAAACAATGGAGTGTACAATGAGGTTTCGTACATAAGTATATTTGTACATataagtaaactcagcaaaaaaataaacgtcctctcactgtcaa
>XM_021557172.2
CATTGTTTCCTTACGTCATGTCATTTATGTGCGACGACAGCGAAGGGGGAAAGATGGCGGCCGCCATGGTGCAAATGTCTTGTTTGTACCGTGGGATGCTAGCGGTCAGGGCAACTGGAATCCGACCGCTCATCCCTGGCCTGGTGCCGTCGCAGTTTAGAGCATTTTCTGTGAAGAAGGAGAAAGAGCCGGAACTGGAGGACAATCcatattataataaatatcaggaAAAGATCAGAAAGCTAAGGAGtgCCAAACCGCAGGAGTTCAATGCTCGGCTCGAGAAGCGAAATGAAATTAAACGGGAGCCACTCGGACACTCTAAACAATCAGAGTTCGTCAACCTCATGGAGCAGGAGTTAGAGAAGCGTGACAACCAGGCTGATGGTTCAGGCAGATTCACCAAAGACAAGACCCTAGGATCTATCCTGAACTTGGACTTGATCCAGGATAAGTCAGGAGAAGAAATTGCAGAGCTTTGGAGGCAGTATTATGCCACAAAAGACACCATAAGCGCCATCATACCAGCCCACGTTTTTGAAGTGATTTTCAACAGAGCTAAGTGCAACCCTGTGACCATGGGAGAGCACGCCCCCAGTCAGTTGATCCTCTACCACTATTCTGACCTGCAGAAAGACAAGGGTGTAGTGCTCATGACTGCCGAGATGGACCCTAAGTTCATGACAGTACATCTGGCTCAGTGCTTGGCCAATCAGGTGCAGCTGTTCTACGGAACCCAGCGGCAGGAGATTTTTAGATTGGTGGAGACCTTCAACCACAAACCAGCTGACTTTAAACACATGGCAGTGATTGCTGAGTTGGAACAGAGTGGCGTCAATCCTGCTCTCACCTCTGGAAACTAGATCAAGAGTTGTCAGACGGTGAAATTTTGCTCCAATTTACCAAGGGATTGGCACATGGTCATTCATTTGGCGCCAATCTTGCGTTTGCGAGAATGACGTCTTTTGCTTGGCACTAATCACCTGGTTGACCAGATGCATCAGTCAAAATGTATGCTAAATTCCCGGGCATAGACGATGTAATGAATCAATGTTATTTAATCTTATCAAAGCCTTAAATGTTATTTTTCACCTCTCCCCTGTCCATCTTACTGTTGTACTTGACAGTAGTCTCGTATTCCTGTCAGAACCCAGCCTACAACCCATAAGGCACTCTATACTGTACATAGGCCTCTGGCCAAATGTAATGCACTATGACCCCTTGTGGAAGGTAGTGCTCTATACacagaatagagtgccatttcatGTATGGTGTTCCCCTTCCAAATATTCTTGTTATTTTTAGATAGGATAACTGCAGGAATTTGGTTTTCAAAACAATGGAGTGTACAATGAGGTTTCGTACATAAGTATATTTGTACATataagtaaactcagcaaaaaaataaacgtcctctcactgtcaa

Function

NR:

description
ATP synthase mitochondrial F1 complex assembly factor 1-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556786.2 False 1534 mRNA 0.46 9 14162385 14171600
XM_021556865.2 False 1522 mRNA 0.46 9 14162385 14171600
XM_021556939.2 False 1486 mRNA 0.46 8 14162385 14171600
XM_021557022.2 False 1474 mRNA 0.46 8 14162385 14171600
XM_021557088.2 False 1438 mRNA 0.45 8 14162385 14171600
XM_021557172.2 True 1426 mRNA 0.45 8 14162385 14171600

Neighbor

gene id symbol gene type direction distance location
LOC110508285 LOC106574085 coding upstream 17439 14140496 ~ 14144946 (+)
tm2d1 LOC106574044 coding upstream 408710 13734763 ~ 13753675 (+)
pdzk1ip1 LOC106574040 coding upstream 720857 13436016 ~ 13441528 (+)
LOC110485322 LOC106574039 coding upstream 731268 13425566 ~ 13431117 (+)
LOC110485223 LOC106574083 coding upstream 751095 13409282 ~ 13411290 (+)
LOC110485979 LOC106574047 coding downstream 919 14172519 ~ 14185257 (+)
LOC110486057 NA coding downstream 20867 14192456 ~ 14214939 (+)
axdnd1 axdnd1 coding downstream 48567 14220167 ~ 14244412 (+)
tdrd5 LOC106574052 coding downstream 79789 14251389 ~ 14304106 (+)
LOC110486340 fam163a coding downstream 146936 14318536 ~ 14349627 (+)
G12680 NA non-coding upstream 63094 14099008 ~ 14099291 (+)
G12675 NA non-coding upstream 71034 14090734 ~ 14091351 (+)
G12670 NA non-coding upstream 78409 14083471 ~ 14083976 (+)
G12663 NA non-coding upstream 93699 14068471 ~ 14068686 (+)
G12662 NA non-coding upstream 96519 14065600 ~ 14065866 (+)
G13121 NA non-coding downstream 249805 14421405 ~ 14421630 (+)
G13334 NA non-coding downstream 397499 14569099 ~ 14571242 (+)
G13359 NA non-coding downstream 462363 14633963 ~ 14635553 (+)
G13363 NA non-coding downstream 470763 14642363 ~ 14642610 (+)
G13364 NA non-coding downstream 471130 14642730 ~ 14642996 (+)
G12410 NA other upstream 530495 13617059 ~ 13666871 (+)
LOC110538561 LOC106574035 other upstream 902389 13238613 ~ 13295452 (+)
LOC110523899 LOC106574090 other upstream 2648003 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 4001099 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 4170843 9980527 ~ 9991542 (+)
G13380 NA other downstream 507750 14679350 ~ 14679578 (+)
G13381 NA other downstream 508098 14679698 ~ 14680027 (+)
G13391 NA other downstream 528576 14700176 ~ 14700730 (+)
G13434 NA other downstream 640171 14811771 ~ 14812624 (+)

Expression


Co-expression Network