LOC110486121 (LOC106574050)


Basic Information

Item Value
gene id LOC110486121
gene name LOC106574050
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14215429 ~ 14218286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557531.2
CGCAGTCTTGTAGTGCGGAATGCTTCTTCCTTTACGGTAGGTTGGAGTCTCTGTTACAACTGTAACGTTATAAATCCTCTAACAACATCAACTGACTCATAGACAAATgccgtgtgtctgtgtggattAGGGTACAAAATATTTGGAGGTACCTTGCTGTAACAAGATTGTCAGTCCATTTGTGGGACACAATGTCGTCTTCCGTTCCTTTTCACACACAGCTCACCTCCATTATGGAGGTCTTGATGAACGCGGCCGTGTCAGAAATATGCGAACTTGTGGACGATGGATACGCCGTTTTACACTTGGAAATATCTCGAAGTCAAAAAGAAAATGACGTTTTGAGGGAGAAGTTACATATAATGGAGACACGTAATGCGCATGGACATGGAAAGAAGTCAGTTGGCCTAGCTCACGAGCGCTCCATCAGAAATCACCTCCCAGTGAGACCAGTCCTCAACTTGGAGACTGGTGAAAATCGATATAACGGGAGTCCCATGGGGAAAGAGTTGAACGACCTTTGCAGCGATGAGGAGCATCCAAGCAACGAAAATGAAGATTCTATAAAACAGTCTTGTGCTGTCATGAAGTCTATGGTGAAGGAGATGCGTAAGCCTGGGTGCATCCAAATCAAAGAGGAAAGACTGGAGGGCACCATAAGCCTACAGAATTACCCAATGATAAAAGGGGAGAGCAGTGTTGAATCAGGTGCTGATGAAGACAAAAGCGATGTGATTGGGCACACTCAGACCGACAGTCTCTTTGAGGACTATGATTCTCACATCAACGCAGACCAAGAAAGCGAGAGCACGTTCCAGAAACTTCAGCATACGAACGTTGCACACCACGTACAGAGGCAGGGATACTCAGGCTTGTGGACACCAAGAAGCACTGAAACAGATTCTGAGGATCCAGCTTGCTCTTATGCTGCAGAAATGAGCCCCACTCGTGTCACAGCTCACACAAAGCAACAACGACAGACTTCCGTAGCTGAGGAAACGTTGTTCGCTGTTGAATCTCACAATGTGAAACCAGAGGCTGCAATGCTTGATTCTGGACCCTATGAAGAAAAATATCAATCTAGCAGTAATGATAATTATTATGATAATGATAGCAGTAATGATTTGCATCTGCAAAACAGCATCTCTTCCGAGGCTAGTGAAAACTTTGGAAATATTTTCTCTAACAGTCAAGAAAATATGAGAGAGAACACCGCAAGGTCAAAGGTGGGCATAGTCCAACGCTACATGGCAGGACATACAATTCAGCACAGGGTTGGCAAGCGAGAAAAACGGTTTGTTTGTGGCTTCTGTAGAAAAAGTTTCACTTGTCCAAAGTATCTTCAGTCTCACCAGCgggttcacacaggagagaaacccttcagctgctctcagtgtgggaagaggTTTGGCCAAGCCGGTTATCTGAAGAAACATCAGAATGtccacacgggagagaaaccATTTGTTTGCCCACTGTGTGGAAAGCGGTTTGCGGACTCTAGTAATCTCATCAGACACAAGAGTGTTCACACAGGAGAAAGACCCTTCATCTGCATACAGTGTGGGGAGAGGTTTGCTGCGAAAGACAACCTTAGAATTCACCTAGAGAGAAACCATTCTGGTTGCTCAAGTGCTGGAGATGTGATGTCACCGAGTATACCGTGAACACGATTAGTCATGAATAATTCAGCATTTTAACATTTTTGACTGAACTCGTTTTGTCTTTAGTGGGCTATTTAACATTTACAGTTGAGGACTAGTTTTGTAACAAAATGAATGGAATTATAAAACAAATCATTTTTAATGTGTGCCTCCATTAATATTCATATTTCAAAAGTGCTGCAAGCAATATATGAAAGGTGCAATAAACTTTTTTCAGAATT

Function

NR:

description
zinc finger protein 287-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557531.2 True 1885 mRNA 0.44 4 14215429 14218286

Neighbor

gene id symbol gene type direction distance location
LOC110485551 nfia coding downstream 125965 13784306 ~ 14089464 (-)
LOC110527678 LOC106574041 coding downstream 480108 13592909 ~ 13735321 (-)
LOC118939516 LOC106574041 coding downstream 629871 13568174 ~ 13585743 (-)
LOC110511200 LOC106574043 coding downstream 684239 13443706 ~ 13531190 (-)
LOC110485093 LOC106574038 coding downstream 817699 13353042 ~ 13397730 (-)
LOC110486637 LOC106574056 coding upstream 276524 14494810 ~ 14529940 (-)
LOC110486932 LOC106574064 coding upstream 418909 14637195 ~ 14858563 (-)
LOC110487385 LOC106574065 coding upstream 737664 14955950 ~ 14959313 (-)
LOC110487509 LOC106574066 coding upstream 745113 14962746 ~ 14988503 (-)
LOC110487829 LOC106574071 coding upstream 850826 15069112 ~ 15070898 (-)
G13013 NA non-coding downstream 28190 14186377 ~ 14187239 (-)
G12973 NA non-coding downstream 128779 14086412 ~ 14086650 (-)
G12966 NA non-coding downstream 148724 14066487 ~ 14066705 (-)
G12954 NA non-coding downstream 164862 14050300 ~ 14050567 (-)
G12953 NA non-coding downstream 168783 14046408 ~ 14046646 (-)
G13053 NA non-coding upstream 25339 14243625 ~ 14244391 (-)
G13196 LOC106574055 non-coding upstream 149835 14366290 ~ 14368501 (-)
G13251 NA non-coding upstream 207751 14426037 ~ 14426628 (-)
G13299 NA non-coding upstream 290925 14509211 ~ 14514499 (-)
G13516 NA non-coding upstream 427256 14645542 ~ 14646667 (-)
G13000 NA other downstream 42086 14141880 ~ 14173343 (-)
G12845 NA other downstream 349958 13863817 ~ 13865471 (-)
G12196 NA other downstream 919976 13293405 ~ 13295453 (-)
G12173 LOC106574030 other downstream 995095 13219837 ~ 13220334 (-)
G13195 fam163a other upstream 128796 14347082 ~ 14349478 (-)
G14120 antithrombin other upstream 947895 15114926 ~ 15174030 (-)
LOC110488330 LOC106613586 other upstream 960260 15175297 ~ 15183693 (-)

Expression

LOC110486121(LOC106574050) Expression in all Baseline Samples

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LOC110486121(LOC106574050) Expression in each Bioproject

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LOC110486121(LOC106574050) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network