axdnd1 (axdnd1)


Basic Information

Item Value
gene id axdnd1
gene name axdnd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14220167 ~ 14244412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557652.2
cccgtactccccaattaaggtgccaccaacctcctgggaCTGGGTTTATGAAATTTGGACTCTCCATGGGAACGAGGGCTTTCCTCCGACCCTCCTCGTCTACAGACACGCCCATTTGCTGCAGTTGAGCGTCCATAGCAACAACTCCATGGGGGGGAAGTGACTGACAGGAGTTTTGAAATAATTCCAGTGACACTAAAGTTCTTCAGTGAGGTTTTAGCTAGCTACTTTGCTCTCTCATGGACGCTAATATTTATAACAACGCTATGCAGAACAAAGTTGCTTGGAAGTGGCGAGTTATCGACTACATGCGAACATGCTAATGTTAATTGGGCTATTTTTGGCTAACGTTAGATAGCTCGCTATAATTAGTATTATTGTTTACATtttgtagctagctaatgttagttgAGGATGTCTGCATCCATAAAATCAAGCCCGTCACCTCCTGTCTTACCGAAACCAGAGGGCCGAAGGATAAAGTCAAGTCATTCTCTTGTATCGCCTGTGGAAGATCATGACAGAGCCCTTTTAGAACTCCCTGAGCTGAAAGAGAAACAGGTGCCAGTGACAGATCGATCAAAGATGCAGCTTGTCCCGATGCAGAATGACTTGATCCCAGATGAGCTCCTGGCCACCCTCACCTCAACCATCTGTCCCCATGATAGGTTGGGACCCCCAAAGCTAACCAAGACCCCCAAAGACTTCAAGGTCTATGGAATACGACACACGGACGCGGTTTGGCATCACCCAGTTGGACGCAAGAAATACAAATACTTTCTCGACCAACCAACGTCATTGACTGGAGCGGGCAGGGACATCTCCTTTTTGTGTGATTCCATGGCCTCTCAGAGGGAGAGGATTCCCCTGCCACCCATGGCTGACAGGGGCACCACCCACACACAGGGCATTCAAAAGGACATGAGCCTTATGGAGAGCCTCATCCCAGAGGAATATCACATTGTGAAAAACAAAGGGGTTCAAGGACTGGAGTGCTATGACGATAAATTCACAGTACTGTTGGAGGACGACGAAAGGATGCTCAAAGTCTTTCCATCAATGAGGCCCAGTGGGCGGCTGGAGGCAGTGCAGCTGATGAAGGTGATGGATGAGATGTTGGACAGAGCAGGGGTCAACCAGGAGTACAGAGCACTGACTGGACTGTCACAGATGCAAGGCCTTCTAGAGCTGGTGCGTGTGGAACAGAACATCTACAACATAGTGTTCCATGAGCTGATCAGACAGGTCAGTGTGGAGTGTGCTGAGAGAGGACAGCTCCTGGCTAAGCTCAGACAGAGGTATGTGGCTCTGTTGGACCGTATCCCCAGGCAGCTGAAGGGTCTCCACACAGAGACACTGGCCCAGAGAGCTCTGGACCGCAGGCTCACAGAGGAGATCATCTGCTTCAGGAGCTCCATCTCTAAGCTTAACACagagctgtgtaagatGAGGGAGCATGACGAGTATGTGTCCAAGCAGGCTGAGAGAGCACAGGAGGAGCTGGCCAAGGCTCTGGAACAATCACAGAAGAACTCTGATGTGGTGGGAGAGTACCATGGCCTGTATGAGATGCAGAGGAGGAGATTGGAGGGACAGGTGGCCAGACTGACGGATGAGAGGGACCTGTGGAGCAGAGTCACTTACAACCTGGCCCTCAAgGTGATCAAGTTGAACAACCTCCAGCTGGCCAGCAGGCTTCACGTCAGTGAGCAGACCTGGACCAAGACTGCTGAGCACTTTACACTCTTCCTGACCTCCAAGGACACAGAAGACCTGAACCATATCATGCAGCTGACAGAGCAGTGGAAGGAGCAGCTGACGTCCTTTGTGCAGAGTCTGAGAGAGGCTGAGCACGGTCACTGTGAGGGGATAAGTAGCATACAAGCTGACATCGTCAAATGGCACACGTTTGTTGGCACCAACATCAGgAGCCCGGATCCGAAATTTGAGAAAGTTTCAGAAGAACAGCTTTATTCAGATTTGAAACAGTGGTCCAATGCGTTGACCATTCAGTGTGAGCGCTACGGGGGCGAAGACCTCCTCTCCTGCCAGGAGACCCTCAAAATGCTGGGCCAGCTGCAGGAGGCCTGGGAGGAGGTGGGCCTCCGGCTCTTCAGGAGACACCCGGCCCCAGACGGCGAGCCCCCCAGGGGCCAGGAGGCCATGAGGGAGCTGGGCCTGGCCGTGTCGGAGCTCCACAAGCAGCTGGGCACGCGCATCAACGGCGAGAGTGGAATCCACAAGCAACTGATGAGTCTGGTCGGGGTGATGGAATTCTGGGCCACCCGACTGAAGGCCCTTGTTGGCCGCACCGAGAGGCTGCCCCACTGTGATTGGCTGAAGCTGGAGAAGGCCCTGGGTAGCTGGATGTTGCTGGCGGAGGAGTCCTTGAAGCACGTCCACAGCACCCAGCCTGAGAATGAGAGGGTCAAGCACAAACCACACGTCCAGATCGAGATCAATGATGTCTTCAATACTCTCCGGGAGTTCATCTTGACCCAAGCCAACTTCTTTGACTGTGAGAACCGAAGGCTATGTGAGGAGGTGAACTCCATCCACACGGCTCTGACTCGCTGGATGGTGGACATGCTCCTCCAGATGGTCCCAGACCACTGTGACGACCAGGAGCAAGACGCCCTGCCGGGGATCAACACCACCGCCATCATGGAGGTCTCCCTGGAGCAACTAGAGGAAGACGCCAAGAACCTCTCAGAGAAACTGGACTACTTCTCCAAATATATCACCAGctCTTGTCGGGCCATTGTGGAGGAGGAGATTCAGAGGAGCATGGCTCGGGATGACTCAGAGAATGAGCTTTCTGAGCTCAGTAAACTGCAGAGGGAATGTGGCGAGTGGATGGAGTCCTGTCGGATCCTGCTGTCCGACAAGAAGGGCAGTCCCGTGGAGCTGCTCGTCACACTGAATTTGGTCCATCGTTCTTTCACGGAACTCCTTCCCTCTGCGATGCCCAGCATGGAATCTCTGATGAACCTACCGGCAGTTGTTCCACTAGAAGCTTTGGATGAAGAAGAGGAGCCGAACAAGAAGAGTCCAATGGAATTCATTGAGGTCGTACACATGGTGGAGGCAGAGTACCCAGAAGAGGCCTTGGAGTGCTCACTGGCCGGCTCTATTATGAAGCTGATAGGCCATGATGGTAACATCATTGAGCGAACCCTGGGGGAGGATACTATTCAGCTGGATGGGACTGAAGACATGGTTGCCCGTCCACACACACCTAACGGTCAGAGAGCCTTTGATGCCCTGGCCACAGTAGGGGTTCTGCAGCACGAGTTACTtGGGGTTGAGGCTCGTGTCCAGCGAGCAGAGGAGCGGGCCCTAAAGGCAGAGGAGGCCCTCCAGGCTGCGCTGGAGAAGATCCAAGATCTGGAGAGACAGCTACAGGGTAGGCCCAGTCTGGAGGCCAAAGTGAGCAAGCAGTCTGTGGCAGCGTCTCCCAAGTCAAAGGTGTCCAGCCCTGAACCCAAACCAGTGAGTCAGAAGCCTGAGCCTAGCCCCAGACAAACCAAGCCCAAGAAACGCTGAACCCtgaaaacagtactgtagcttcAGATGTAATGTGAAACTCTGCTCCTCTGAGGATCCAACGACTTTGTATTTGACAAACGAATAAACGCAAAGTGATGTCTAAGTATTGTATGACTTGGCGTTCAACAATGTTTAATCAGTTGCCTTTTTTTGGGTTGTTCTGTCATCTGCATGCTATTTGTTAAGCAATCATGTCCTTACAGCAAGGTTATGTGACATTTGGTTCCCTCTATAGTCATGTTTATACTATATGGTTCTATAGTCATGTTTATACTATATGGTTCCCTCTCTAGTCATGTATATACTATATGGTTCCCTCTATAGTCATGTATATACTATATGGTTCCCTCTATAGTCATGTTTATACTATATGGTTCTATAGTCATGTTTATACTATATGGTTCcttttcaataataataatatttatttattatggacCCTATTTACCCTCATATTACCCTGTCTGATTTAGCTGGTTTGCAGTGTGTCGTCATCAGTATACAATTAAAACATATTTCTACTGAGTTATATAAAACAGAGTT

Function

symbol description
axdnd1 Orthologous to human AXDND1 (axonemal dynein light chain domain containing 1).

NR:

description
axonemal dynein light chain domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557652.2 True 4092 mRNA 0.51 25 14220167 14244412

Neighbor

gene id symbol gene type direction distance location
LOC110486057 NA coding upstream 5228 14192456 ~ 14214939 (+)
LOC110485979 LOC106574047 coding upstream 34910 14172519 ~ 14185257 (+)
LOC110485648 LOC106574045 coding upstream 48567 14162385 ~ 14171600 (+)
LOC110508285 LOC106574085 coding upstream 75221 14140496 ~ 14144946 (+)
tm2d1 LOC106574044 coding upstream 466492 13734763 ~ 13753675 (+)
tdrd5 LOC106574052 coding downstream 6977 14251389 ~ 14304106 (+)
LOC110486340 fam163a coding downstream 74124 14318536 ~ 14349627 (+)
LOC110486505 LOC106574055 coding downstream 106133 14350545 ~ 14495848 (+)
gpr52 LOC106574057 coding downstream 156167 14400579 ~ 14406157 (+)
LOC110487584 LOC106574067 coding downstream 749525 14993937 ~ 15003427 (+)
G12692 NA non-coding upstream 29352 14126330 ~ 14190815 (+)
G12680 NA non-coding upstream 120876 14099008 ~ 14099291 (+)
G12675 NA non-coding upstream 128816 14090734 ~ 14091351 (+)
G12670 NA non-coding upstream 136191 14083471 ~ 14083976 (+)
G12663 NA non-coding upstream 151481 14068471 ~ 14068686 (+)
G13121 NA non-coding downstream 176993 14421405 ~ 14421630 (+)
G13334 NA non-coding downstream 324687 14569099 ~ 14571242 (+)
G13359 NA non-coding downstream 389551 14633963 ~ 14635553 (+)
G13363 NA non-coding downstream 397951 14642363 ~ 14642610 (+)
G13364 NA non-coding downstream 398318 14642730 ~ 14642996 (+)
G12410 NA other upstream 588277 13617059 ~ 13666871 (+)
LOC110538561 LOC106574035 other upstream 960171 13238613 ~ 13295452 (+)
LOC110523899 LOC106574090 other upstream 2705785 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 4058881 10140230 ~ 10162948 (+)
G13380 NA other downstream 434938 14679350 ~ 14679578 (+)
G13381 NA other downstream 435286 14679698 ~ 14680027 (+)
G13391 NA other downstream 455764 14700176 ~ 14700730 (+)
G13434 NA other downstream 567359 14811771 ~ 14812624 (+)
G13639 NA other downstream 717142 14961554 ~ 14962003 (+)

Expression


Co-expression Network