LOC110487584 (LOC106574067)


Basic Information

Item Value
gene id LOC110487584
gene name LOC106574067
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14993937 ~ 15003427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948336.1
TGACACTAGTTCATCTTGAATAATGTTTTTACATGAACAATTAAAAAAAGTTTAAACACTTCAATTAATCAACATTGAATGAATCAACATATCATTTCAAAATGTACAAATGATCTAACTTGTTTGTAAATGTTAGACATCTTAGTATGTAGGCTATTGTTACTAAAGCAGAATTTTGGACAAAAAAGATCATACCAAAGGTATGCTCCACTCCCTGATCTAAAGGGTgagcagacttctattccagcccagcaaTAATACACGTTATTATCAACTCATTAGGTTTGATACATTGAATTCTCCCAGCATACCTCCGGGAGAAGGATTGGCCTGTTACAGTTGTAATAAGTTTGTAGCCTACATTGTGTGTGACTTTTAACTGTATTTTAACCAGCAGTCTCTTGGGACATTCACTGGGACctcttcatctgcagacaggCTTTCGCAGCTCTCCATGTCTCAGGAAAGACAACATCACAAAGCAACAGGTTTAATTTTATTTCAATTACACAGCCCTGATTATTATCTGCCCGTCTTCATAGTTCTCATCTCTAAGGACTAGAACTGGATACTCTTTTCATGATGTCATCCCACAACCCGCCCTATTTAACTATGACAGCTGGAGCAGAAAATTATTTCACCCTCTTCCATTGCTGATATCTACAAATGTATTTAGAGCCTGAGTTAATTTAAAATTATAAATATGCCTAAATCAAGATACCATGTTAATATGAAGAAAGCTAACTGATGATATTTCACATAGCCAAGTAtgtaaagttggctagctagctatttagctAGCAGCTCACTAGCCTGCACACTAATTAGCCTacatagctagctggctaataatACATCGTTTAACATTTTCGAAAATGTACCGActtacttacttgaataggttcaTGCCCACGCCAACGAAGCTGCCAATCTTTTGTAGCGAAGCGTTGTCGAGCGGAGCCACCTCTTCTGGTTGAGAAGTTTCACACGCTTTGAAAACATGCCATACTTTTCGCGGTGAATTTGAACGTTCTAAAATTCCAATGACATTCAAAATACTGTTGTCACAACATTAGATAATTGCTTGTTGATGTTTCAAAGCAAATGCACAAACTTAGTGTCGCAGAGCATATAAAAAATAGGTAATAAGATATTTGACAATAATCGACGTTATTGATTTTGCACTCTACAGCAAAGGCATAGGAGCAATGGAAGAGCCCACCTGCCATGTCCAAGCAGGTGTTATGCTGGAGGATCTTAGGAAATTAGTCACTTGGGCTCACTCTCATGGCTCCCACTGTCCCCACAAGCTTTGGCACAAGGGAAAACTTAACCCAGGGGTTGGGCATCAGTGCAAAGTTAATTGGAGATGTGAGGTTGGACATGCCTTCGACTGGGCCTTGACACTTGCCACAGAGGTGAAAGTTGAGGAGGAaaagacagaggaggaggtggatgTAGGTCATAGGAGCAAGAGGAGGAGAATACAATGCCTGTCCTCggaagaggaaggggagatgGTATATACCCCATTCATTGGGAATATTACTGATGAAAATGGGGTTGAATCTGATATGAGCCTCTGTAGCCTTGTGACCCATGTGtcaagagagggaggagatgcccCAGTGAGAATGCTGGAAGAGGCCTTGACTTTAAAGTCcaagcagcagagaactgtgAAACAACCATTCTTTCCTAGGATGATTGTTAAGGAGCAACCCAAAGGAAATATCAACATGGAAGTTAGGTTGGAGCTAGAGCAAAATAACAATGAGACAAACCAAGAGGGAAGGGGCATTGAGAAGAGGACAGTTCTAAAGGAGGAAAGCCCAGGCCCAAATGAAAACCTCATTACAGCTCTTGACATCACCCCTCTCCAAAGCTGCCTTTCAGACATTGAGCGGGCCCCAGAAGATGAGGTGTGGGCGACTCCTAAGGGTGGACAgtgttccctctcccctcctaaaCCTAAGCCCCTATTCCAGGGCCAGGGTGAAACCCACAGGCAGGGCTCCTGTTGTGCTGCCGTCTTCCCACCTACACCTGAGAGATCAGGTGCGGCCTCAGGGCACTGTCCCCCTAATAAAGGCAAGGTGAAGGCAGCACCCAAGAAACCAGCAGAGAAAAGAGGGCCAAAGAGAGCAGAGGCCAGCCTGGGCAATCTCATGACCTTTGTCATGTGGCTAAACTCTCAAAACCATTCGGGGGCCCGCTGTCCAGGCAGCCTGCCTATCGCCGAGCTGGACAGGTTATTGGTTGCCTTCTTCCAGTATGTGTGGGAGGAGTCCCGCCTGCAGGCCCTGAGCAGCAGCACTCTTACGACATACGCTCGTATGCTGGACCGTGATCTGCAGAACCAGGGCTGCAGCTTCAGTATCCGGAAGTCAGCCGAGTTCACAAACACCATTAGGGAACTGGATAGCTGCTGCCAGCACTtgaaacagagagagtgggacagagataTCCTGGTGATCCAGAGcttgaggagagaagaggaggctgCACTGAGGCAGGCAGGGGTCCTGTCTAGGGCCACACCGGATGGGCTGCTCAACCTGGTCCTGCTCAACAACCTCAAGGCCTTTGGGAAGTTCCACCTCCAGGGAGTCTGGCCCGGGCGAGTCTCCGACTTTCACACGGCCACGGAGACCCACCCAGGGACGGGCGACAGGGAAAAACTGGAATACCTGGAGTGGAACAATACTAATTTCCCAGAACAGAGCCCTGTACGGATGCACGGCCTGGCCGACGACCCAGAACGCTGCCCCCTGTGGGACTACAAGCTCTATGTATCCAAGCGTGTTGGAAGCCACCTGATCGCCTCTGATGCAATGTACTGTTGCCCACTGAGCCAGTATAGGCCCTGGGATAATTACTGGTTCAGCCGCCATGCCATGCCCAAACCTCGCCTGGAAAAGATGATTAAGTCTCTGAGCCACCATATACTCTCCGTTCGTAATGGGAGGGCAGCAGCCGCATATTAGTCAGCAGGTACTAATAGAAGAACATTGATTGTATTTtaaatgtatactgtatgtgcatACATACATTCAAAGTGTGATATCCTAGCATGACGTGTGTTTAATTATACCATTGAATGTTGTATGCTATGTTATGGTTGAAATACTCATAAATGGTATTACAAAAAAAATCTTATATTCATGACAATGATTCCTCATATTTCTAAGTTACACCAGTCTCCAGCCACTCTCATAACTGAATGAAGGTTATTTGCATTAACTCGTGTCATAAATACTGTTCTCCTAAATTACATACTGTAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948336.1 True 3284 mRNA 0.45 3 14993937 15003427

Neighbor

gene id symbol gene type direction distance location
LOC110486505 LOC106574055 coding upstream 498089 14350545 ~ 14495848 (+)
gpr52 LOC106574057 coding upstream 587780 14400579 ~ 14406157 (+)
LOC110486340 fam163a coding upstream 644310 14318536 ~ 14349627 (+)
tdrd5 LOC106574052 coding upstream 689831 14251389 ~ 14304106 (+)
axdnd1 axdnd1 coding upstream 749525 14220167 ~ 14244412 (+)
LOC110487655 LOC106574076 coding downstream 12711 15016138 ~ 15019092 (+)
elav1 elav1 coding downstream 20992 15024419 ~ 15026535 (+)
LOC110487930 LOC106574072 coding downstream 71757 15075184 ~ 15080304 (+)
LOC110529430 LOC106574078 coding downstream 114423 15117850 ~ 15126002 (+)
LOC110488062 LOC106613585 coding downstream 127099 15130526 ~ 15159472 (+)
G13637 NA non-coding upstream 29459 14962746 ~ 14964478 (+)
G13665 NA non-coding upstream 75357 14917450 ~ 14918580 (+)
G13661 NA non-coding upstream 82589 14910918 ~ 14911348 (+)
G13658 NA non-coding upstream 84844 14908801 ~ 14909093 (+)
G13630 NA non-coding upstream 118334 14875368 ~ 14875603 (+)
G13716 NA non-coding downstream 1326 15004753 ~ 15005137 (+)
G13728 NA non-coding downstream 37555 15040982 ~ 15041302 (+)
G13731 NA non-coding downstream 39466 15042893 ~ 15043157 (+)
G13750 NA non-coding downstream 55162 15058589 ~ 15058883 (+)
G13757 NA non-coding downstream 61581 15065008 ~ 15065280 (+)
G13639 NA other upstream 31934 14961554 ~ 14962003 (+)
G13434 NA other upstream 181313 14811771 ~ 14812624 (+)
G13391 NA other upstream 293207 14700176 ~ 14700730 (+)
G13381 NA other upstream 313910 14679698 ~ 14680027 (+)
G13380 NA other upstream 314359 14679350 ~ 14679578 (+)
sass6 sass6 other downstream 456477 15447458 ~ 15468011 (+)
LOC110490510 LOC106573976 other downstream 691614 15694810 ~ 15716774 (+)
LOC118941201 NA other downstream 1575659 16578956 ~ 16592967 (+)
LOC110492606 LOC106573909 other downstream 1913072 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 1959630 16962997 ~ 16967790 (+)

Expression


Co-expression Network