LOC110487655 (LOC106574076)


Basic Information

Item Value
gene id LOC110487655
gene name LOC106574076
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15016138 ~ 15019092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559606.2
atcatagaagaagaagacaCACCCACAACTTCAACTTCCTTTTCGAAACCCCAACCGACACCCACCCAGTTTACCTACAGTCAGAACAATATCTCAATCTTCTGAAACCAAATGGCTGTCAATCAATTGAATGATGTCCGGGAGCAGTTTGTCAGCCTGGTGACAGAGGCTAATATCAAGGCTCTACTAGACAGACTTCAGCATCCACATGAAGGCAGAAGATTTATCAACAAGTTGGAGGCAGAAGAGGTGATACAAAAAAACCCTGAGAGGGCCGACAAGGCATGTTCTCTTATTGATATGGTGATTAGTAAATGTGATGCTGCTTGCAAGATGATGTTAACCACATGGCATAATCTAGACCCCTCCAGCCAGATATTGAACACACCGGCACATGTCCTCACAAGCCAAAGGGCACTAGGATCCTCCTCAAGGATGCCTCCATGTCAAGGTTCTCCTCCAGCATCGTCTCGTGTCATGGGTGCTGAAAGAATGGCAAATGAAATAAAAACTACAGTGATTAATTATAACTACACTATGCCTATTCACCAAGCCCACCCAAACCTGAAGAGGAAGGCTGAAAGCATTGGAATTGGGACTGTTGGAAGCACTGTAAATAACGCCAAGAGGCCCAAAATTGAGGACCACCTTGAGAAAAACATGAAGACCGCACCCAAGGCACCTGTACCCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAATCCTACTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAATCCTACTGCAGCTAAGGAGCCTAAAGTCAAGAATCCTACTGCAGCTAAGGAGCCTAAAGTCAAGAATCCTACTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAATCCTACTGCAGCTAAGGAGCCTAAAGTCAAGAATCCTACTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTACTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAAAAaaaatagttaaataaagatttaaaacATAAGAGCACCAGGTGCATATGCCTAAAATTCTTCTTATGAGATGTGAAGTTTTAGGCATATTGCCTTTAAAACATTCAAAGCACGAGCTCCGTGTCTCCGTGCTCTGTGTCACGTTCACtctccatgtttgtttgtgttgcaaaTTTCCCGTGTGGAAGAACGCAAAGCGTCGTCCAATTGACAAAAAATATTGCCGTAAATAGTGTGATTTGCGACACAATTAAATAAATGATAGAGCATTATATGAAACGATAGACGTTTTTCTATCGTCAGACGATATATATATcgtcatatcgcccagccctattatcgatcatagtctgccgCTGGAAAAACATGTCTTATGGCTTCACACCCCTTTCTATAATGTgaataaagagttacttgtctaacag
>XM_036948429.1
ACGACAAACTGCACCTCCGACTACATCGACTCGCTGTCAGTCAATAGTAAATTGTCATTATTTAATGCCTACTGAAAAATACTAAAGGCTGATCAGGGAGGACCTTGTAGAACTGGTACTAGTAGAGAGCTATAGGTGCCAGTGGATACGGTACAGCTGCCACAGGTCTGTCCGGCAAGAACACGTCAGATGTCTTCAGATCAGTCAATCAATTGAATGATGTCCGGGAGCAGTTTGTCAGCCTGGTGACAGAGGCTAATATCAAGGCTCTACTAGACAGACTTCAGCATCCACATGAAGGCAGAAGATTTATCAACAAGTTGGAGGCAGAAGAGGTGATACAAAAAAACCCTGAGAGGGCCGACAAGGCATGTTCTCTTATTGATATGGTGATTAGTAAATGTGATGCTGCTTGCAAGATGATGTTAACCACATGGCATAATCTAGACCCCTCCAGCCAGATATTGAACACACCGGCACATGTCCTCACAAGCCAAAGGGCACTAGGATCCTCCTCAAGGATGCCTCCATGTCAAGGTTCTCCTCCAGCATCGTCTCGTGTCATGGGTGCTGAAAGAATGGCAAATGAAATAAAAACTACAGTGATTAATTATAACTACACTATGCCTATTCACCAAGCCCACCCAAACCTGAAGAGGAAGGCTGAAAGCATTGGAATTGGGACTGTTGGAAGCACTGTAAATAACGCCAAGAGGCCCAAAATTGAGGACCACCTTGAGAAAAACATGAAGACCGCACCCAAGGCACCTGTACCCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAATCCTACTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAATCCTACTGCAGCTAAGGAGCCTAAAGTCAAGAATCCTACTGCAGCTAAGGAGCCTAAAGTCAAGAATCCTACTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAATCCTACTGCAGCTAAGGAGCCTAAAGTCAAGAATCCTACTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTACTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAGCTAAGGAGCCTAAAGTCAAGAAGCCTGCTGCAAAAaaaatagttaaataaagatttaaaacATAAGAGCACCAGGTGCATATGCCTAAAATTCTTCTTATGAGATGTGAAGTTTTAGGCATATTGCCTTTAAAACATTCAAAGCACGAGCTCCGTGTCTCCGTGCTCTGTGTCACGTTCACtctccatgtttgtttgtgttgcaaaTTTCCCGTGTGGAAGAACGCAAAGCGTCGTCCAATTGACAAAAAATATTGCCGTAAATAGTGTGATTTGCGACACAATTAAATAAATGATAGAGCATTATATGAAACGATAGACGTTTTTCTATCGTCAGACGATATATATATcgtcatatcgcccagccctattatcgatcatagtctgccgCTGGAAAAACATGTCTTATGGCTTCACACCCCTTTCTATAATGTgaataaagagttacttgtctaacag

Function

NR:

description
late histone H1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559606.2 False 1692 mRNA 0.45 4 15016138 15019092
XM_036948429.1 True 1778 mRNA 0.45 4 15016425 15019092

Neighbor

gene id symbol gene type direction distance location
LOC110487584 LOC106574067 coding upstream 12711 14993937 ~ 15003427 (+)
LOC110486505 LOC106574055 coding upstream 520290 14350545 ~ 14495848 (+)
gpr52 LOC106574057 coding upstream 609981 14400579 ~ 14406157 (+)
LOC110486340 fam163a coding upstream 666511 14318536 ~ 14349627 (+)
tdrd5 LOC106574052 coding upstream 712032 14251389 ~ 14304106 (+)
elav1 elav1 coding downstream 5327 15024419 ~ 15026535 (+)
LOC110487930 LOC106574072 coding downstream 56092 15075184 ~ 15080304 (+)
LOC110529430 LOC106574078 coding downstream 98758 15117850 ~ 15126002 (+)
LOC110488062 LOC106613585 coding downstream 111434 15130526 ~ 15159472 (+)
LOC110488261 antithrombin coding downstream 144224 15163316 ~ 15171415 (+)
G13716 NA non-coding upstream 11001 15004753 ~ 15005137 (+)
G13637 NA non-coding upstream 51660 14962746 ~ 14964478 (+)
G13665 NA non-coding upstream 97558 14917450 ~ 14918580 (+)
G13661 NA non-coding upstream 104790 14910918 ~ 14911348 (+)
G13658 NA non-coding upstream 107045 14908801 ~ 14909093 (+)
G13728 NA non-coding downstream 21890 15040982 ~ 15041302 (+)
G13731 NA non-coding downstream 23801 15042893 ~ 15043157 (+)
G13750 NA non-coding downstream 39497 15058589 ~ 15058883 (+)
G13757 NA non-coding downstream 45916 15065008 ~ 15065280 (+)
G13759 NA non-coding downstream 47285 15066377 ~ 15066586 (+)
G13639 NA other upstream 54135 14961554 ~ 14962003 (+)
G13434 NA other upstream 203514 14811771 ~ 14812624 (+)
G13391 NA other upstream 315408 14700176 ~ 14700730 (+)
G13381 NA other upstream 336111 14679698 ~ 14680027 (+)
G13380 NA other upstream 336560 14679350 ~ 14679578 (+)
sass6 sass6 other downstream 440812 15447458 ~ 15468011 (+)
LOC110490510 LOC106573976 other downstream 675949 15694810 ~ 15716774 (+)
LOC118941201 NA other downstream 1559994 16578956 ~ 16592967 (+)
LOC110492606 LOC106573909 other downstream 1897407 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 1943965 16962997 ~ 16967790 (+)

Expression


Co-expression Network