LOC110487930 (LOC106574072)


Basic Information

Item Value
gene id LOC110487930
gene name LOC106574072
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15075184 ~ 15080304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948626.1
ATATTTCAGAAACCAGTCACCAAATAATACACGGACCTTCGAACCGGAAGCAAATTTGTGGGGTCATGGAAACTTTGAAACGTTTTCTGTCGGATGCACGCATGTAAACAGAACCTCTTGTTTAGTTGGTGTAAGACCAACAACAGGTCATGCATGCCTCTCAAGGGGGTACGAATTTGAAACATTAGTATTGCAGTAAATTATTGAGAAAAAATGTCTATGGAAGATCCGTTTTTCGTCGTCAAATGTGAGGTCCAGAAGGCGGTGAACACTTCCCAAGGGCTGTACCAGAGATGGAGCGAGCTGCTACAGGATCCCAGTGGTACTTCCAAGGAGGAGGTGGACTGGACCACCAATGAGTTGAGAAACAGTCTGCGGTCCATCGAATGGGACCTGGAGGATCTCGATGAGACCATCAGTATTGTTGAATCAAACCCTAAGAAGTTCAATCTGGACACAGTGGAGCTGACCAAACGGAAAGGCTTCATCACAAGCACTAGACAAACTGTTAAGGAAATGAAAGACCACATGTCCAGTCCAACAGCCTTAGCCATGTCAGACAAGaaaaatagacagGCTCTGTTAGGGAACAGTGGGTCTCAAGGCCCAATCTGGCAACCAGGACCTGACAAATACACCCGTCTGGACCAAGAGCTACGTACGGCCAACTCCATGTTCATTGATGAGCAGCAAACCCAGCAGCAGctcaTGGCAGAGCAGCAGGATGACCAGCTGGAACTGGTGTCTGGGACCATCGGGGTGCTGAAGAACATGTCTGAGAGGATTGGTATGGAGCTGGATGAACAGACCGTGATGCTGGATGACTTCTCCAATGAGATGGAAGGTACCCACTCCAGACTAGACAATGTCATGAAGAAGCTGGCCAAGGTCTCCAACATGACCACCGGGAATGTCTGTGCCAGACGACCTGGAGTCATAAAGGGTCAcggctggagaggaaggaaaagtaCCCCCCCACACCCCATCAAATGGTTGCACCACCTTATAAGGAAACACCCTCAGGAAGCTTACAACAGGAAGAACTCAGGAGACAGGGAGTCAAATGAAATCTGGTCGTTTTTTTGTCAGGATATCCTGCCGGTTCTTTCCCCCCAGCCCCTAGACAATGTGCCTGCCGGTACTTTCCCCCCGGCCCCTAGACAATGTTCTTAGGGTTTTATATAGTATTATTCCCCtgctattccccccccccccctttgcaaCATGCCACTCCAGTTGCAACTTTAAAATATGATTGTTTCAGGTCGAAAGACATGATAGCCTTCATAGAACATAAATTCCTCACAATTGTATGTATTTGGACCTTTCATGCCTTAATATGTCTGAAATaattgtgttatttatttatttttacataaaaaaaaaaaaactgcagatCAATTGCTCCTCACGTTGTTTGATACagttcatcctcctctctttctctcttcccttctcttgcAGACCGCCGACAGTGGTGTGCTATCGGCATTCTACTGGCCATTCTGTTTGTGGTCGTCATGCTCCTCTTAATCCTATGATGACcgtccaccaccacaacaacacccCTGTCTCCGTTTGACCAAAGGGATGGACTTTACATGGGGCTTGGGAAAACATCAAGGTTTCCATTGACATAGGGAAATGGCTATCTACCCCAACCCTCTTTTTACTACATACTGCTGAATATACAGCGATTCTTCCGTAGCTGGTGCAAGTTTCTGCTCAAGCAACATTCTCAGTTGTCATTTTAGCACTAAACTTAAACCTTCCTTGGCATCTCTATGTAGGATTTGGCCCTATGTGAATACTAGGCCTCAAAATATTTTCCGGAAACCCATTTGAGGTAAACCAGGGTGTAACCAGGGTCGTTGCGTACTCCTTGTGACATTTTAGTGTTAATAT
>XM_021559962.2
ATAATACACGGACCTTCGAACCGGAAGCAAATTTGTGGGGTCATGGAAACTTTGAAACGTTTTCTGTCGGATGCACGCATGTAAACAGAACCTCTTGTTTAGTTGGTGTAAGACCAACAACAGGTCATGCATGCCTCTCAAGGGGGTACGAATTTGAAACATTAGTATTGCAGTAAATTATTGAGAAAAAATGTCTATGGAAGATCCGTTTTTCGTCGTCAAATGTGAGGTCCAGAAGGCGGTGAACACTTCCCAAGGGCTGTACCAGAGATGGAGCGAGCTGCTACAGGATCCCAGTGGTACTTCCAAGGAGGAGGTGGACTGGACCACCAATGAGTTGAGAAACAGTCTGCGGTCCATCGAATGGGACCTGGAGGATCTCGATGAGACCATCAGTATTGTTGAATCAAACCCTAAGAAGTTCAATCTGGACACAGTGGAGCTGACCAAACGGAAAGGCTTCATCACAAGCACTAGACAAACTGTTAAGGAAATGAAAGACCACATGTCCAGTCCAACAGCCTTAGCCATGTCAGACAAGaaaaatagacagGCTCTGTTAGGGAACAGTGGGTCTCAAGGCCCAATCTGGCAACCAGGACCTGACAAATACACCCGTCTGGACCAAGAGCTACGTACGGCCAACTCCATGTTCATTGATGAGCAGCAAACCCAGCAGCAGctcaTGGCAGAGCAGCAGGATGACCAGCTGGAACTGGTGTCTGGGACCATCGGGGTGCTGAAGAACATGTCTGAGAGGATTGGTATGGAGCTGGATGAACAGACCGTGATGCTGGATGACTTCTCCAATGAGATGGAAGGTACCCACTCCAGACTAGACAATGTCATGAAGAAGCTGGCCAAGGTCTCCAACATGACCACCGGTCACTGATGTATGGATGGTCATTTAAAGATGATATATTCTTTACTTGAGAGTGGCTTCCTGTGAAGGGAATGTCTGTGCCAGACGACCTGGAGTCATAAAGGGTCAcggctggagaggaaggaaaagtaCCCCCCCACACCCCATCAAATGGTTGCACCACCTTATAAGGAAACACCCTCAGGAAGCTTACAACAGGAAGA
>XM_021559884.2
TAATACACGGACCTTCGAACCGGAAGCAAATTTGTGGGGTCATGGAAACTTTGAAACGTTTTCTGTCGGATGCACGCATGTAAACAGAACCTCTTGTTTAGTTGGTGTAAGACCAACAACAGGTCATGCATGCCTCTCAAGGGGGTACGAATTTGAAACATTAGTATTGCAGTAAATTATTGAGAAAAAATGTCTATGGAAGATCCGTTTTTCGTCGTCAAATGTGAGGTCCAGAAGGCGGTGAACACTTCCCAAGGGCTGTACCAGAGATGGAGCGAGCTGCTACAGGATCCCAGTGGTACTTCCAAGGAGGAGGTGGACTGGACCACCAATGAGTTGAGAAACAGTCTGCGGTCCATCGAATGGGACCTGGAGGATCTCGATGAGACCATCAGTATTGTTGAATCAAACCCTAAGAAGTTCAATCTGGACACAGTGGAGCTGACCAAACGGAAAGGCTTCATCACAAGCACTAGACAAACTGTTAAGGAAATGAAAGACCACATGTCCAGTCCAACAGCCTTAGCCATGTCAGACAAGaaaaatagacagGCTCTGTTAGGGAACAGTGGGTCTCAAGGCCCAATCTGGCAACCAGGACCTGACAAATACACCCGTCTGGACCAAGAGCTACGTACGGCCAACTCCATGTTCATTGATGAGCAGCAAACCCAGCAGCAGctcaTGGCAGAGCAGCAGGATGACCAGCTGGAACTGGTGTCTGGGACCATCGGGGTGCTGAAGAACATGTCTGAGAGGATTGGTATGGAGCTGGATGAACAGACCGTGATGCTGGATGACTTCTCCAATGAGATGGAAGGTACCCACTCCAGACTAGACAATGTCATGAAGAAGCTGGCCAAGGTCTCCAACATGACCACCGACCGCCGACAGTGGTGTGCTATCGGCATTCTACTGGCCATTCTGTTTGTGGTCGTCATGCTCCTCTTAATCCTATGATGACcgtccaccaccacaacaacacccCTGTCTCCGTTTGACCAAAGGGATGGACTTTACATGGGGCTTGGGAAAACATCAAGGTTTCCATTGACATAGGGAAATGGCTATCTACCCCAACCCTCTTTTTACTACATACTGCTGAATATACAGCGATTCTTCCGTAGCTGGTGCAAGTTTCTGCTCAAGCAACATTCTCAGTTGTCATTTTAGCACTAAACTTAAACCTTCCTTGGCATCTCTATGTAGGATTTGGCCCTATGTGAATACTAGGCCTCAAAATATTTTCCGGAAACCCATTTGAGGTAAACCAGGGTGTAACCAGGGTCGTTGCGTACTCCTTGTGACATTTTAGTGTTAATAT

Function

NR:

description
syntaxin-6-like isoform X1

GO: NA

KEGG:

id description
K08498 STX6; syntaxin 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948626.1 False 1905 mRNA 0.46 8 15075184 15080304
XM_021559962.2 False 1086 mRNA 0.48 8 15075207 15079441
XM_021559884.2 True 1324 mRNA 0.47 8 15075208 15080304

Neighbor

gene id symbol gene type direction distance location
elav1 elav1 coding upstream 48649 15024419 ~ 15026535 (+)
LOC110487655 LOC106574076 coding upstream 56092 15016138 ~ 15019092 (+)
LOC110487584 LOC106574067 coding upstream 71757 14993937 ~ 15003427 (+)
LOC110486505 LOC106574055 coding upstream 579336 14350545 ~ 14495848 (+)
gpr52 LOC106574057 coding upstream 669027 14400579 ~ 14406157 (+)
LOC110529430 LOC106574078 coding downstream 37546 15117850 ~ 15126002 (+)
LOC110488062 LOC106613585 coding downstream 50222 15130526 ~ 15159472 (+)
LOC110488261 antithrombin coding downstream 83012 15163316 ~ 15171415 (+)
LOC110529632 dph5 coding downstream 112345 15192649 ~ 15241166 (+)
LOC110489303 dbt coding downstream 344818 15425122 ~ 15432764 (+)
G13762 LOC106574071 non-coding upstream 4315 15068529 ~ 15070869 (+)
G13759 NA non-coding upstream 8598 15066377 ~ 15066586 (+)
G13757 NA non-coding upstream 9904 15065008 ~ 15065280 (+)
G13750 NA non-coding upstream 16301 15058589 ~ 15058883 (+)
G13731 NA non-coding upstream 32027 15042893 ~ 15043157 (+)
G13767 NA non-coding downstream 13532 15093836 ~ 15094100 (+)
G13768 NA non-coding downstream 13818 15094122 ~ 15094400 (+)
G13769 NA non-coding downstream 14658 15094962 ~ 15095176 (+)
G13772 NA non-coding downstream 17169 15097473 ~ 15097685 (+)
G13774 NA non-coding downstream 19630 15099934 ~ 15100187 (+)
G13639 NA other upstream 113181 14961554 ~ 14962003 (+)
G13434 NA other upstream 262560 14811771 ~ 14812624 (+)
G13391 NA other upstream 374454 14700176 ~ 14700730 (+)
G13381 NA other upstream 395157 14679698 ~ 14680027 (+)
G13380 NA other upstream 395606 14679350 ~ 14679578 (+)
sass6 sass6 other downstream 379600 15447458 ~ 15468011 (+)
LOC110490510 LOC106573976 other downstream 614737 15694810 ~ 15716774 (+)
LOC118941201 NA other downstream 1498782 16578956 ~ 16592967 (+)
LOC110492606 LOC106573909 other downstream 1836195 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 1882753 16962997 ~ 16967790 (+)

Expression


Co-expression Network