Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110488062 |
| gene name | LOC106613585 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 15130526 ~ 15159472 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| roquin-1-like isoform X4 |
| id | description |
|---|---|
| K15690 | RC3H; RING finger and CCCH-type zinc finger domain-containing protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036949018.1 | False | 3776 | mRNA | 0.58 | 17 | 15130526 | 15157032 |
| XM_036948947.1 | True | 6305 | mRNA | 0.51 | 18 | 15130526 | 15159472 |
15,112,000
15,116,000
15,120,000
15,124,000
15,128,000
15,132,000
15,136,000
15,140,000
15,140,000
15,144,000
15,148,000
15,152,000
15,156,000
15,160,000
15,164,000
15,168,000
15,172,000
NC_048565.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110529430 | LOC106574078 | coding | upstream | 4524 | 15117850 ~ 15126002 (+) |
| LOC110487930 | LOC106574072 | coding | upstream | 50222 | 15075184 ~ 15080304 (+) |
| elav1 | elav1 | coding | upstream | 103991 | 15024419 ~ 15026535 (+) |
| LOC110487655 | LOC106574076 | coding | upstream | 111434 | 15016138 ~ 15019092 (+) |
| LOC110487584 | LOC106574067 | coding | upstream | 127099 | 14993937 ~ 15003427 (+) |
| LOC110488261 | antithrombin | coding | downstream | 3844 | 15163316 ~ 15171415 (+) |
| LOC110529632 | dph5 | coding | downstream | 33177 | 15192649 ~ 15241166 (+) |
| LOC110489303 | dbt | coding | downstream | 265650 | 15425122 ~ 15432764 (+) |
| LOC118966767 | NA | coding | downstream | 272037 | 15431509 ~ 15431641 (+) |
| lrrc39 | lrrc39 | coding | downstream | 273617 | 15433089 ~ 15437025 (+) |
| G13774 | NA | non-coding | upstream | 30339 | 15099934 ~ 15100187 (+) |
| G13772 | NA | non-coding | upstream | 32841 | 15097473 ~ 15097685 (+) |
| G13769 | NA | non-coding | upstream | 35350 | 15094962 ~ 15095176 (+) |
| G13768 | NA | non-coding | upstream | 36126 | 15094122 ~ 15094400 (+) |
| G13767 | NA | non-coding | upstream | 36426 | 15093836 ~ 15094100 (+) |
| G13806 | NA | non-coding | downstream | 38092 | 15197564 ~ 15197840 (+) |
| G13807 | NA | non-coding | downstream | 38660 | 15198132 ~ 15198454 (+) |
| G13820 | NA | non-coding | downstream | 66255 | 15225727 ~ 15225937 (+) |
| G13823 | NA | non-coding | downstream | 69159 | 15228631 ~ 15228879 (+) |
| G13827 | NA | non-coding | downstream | 71526 | 15230998 ~ 15231515 (+) |
| G13639 | NA | other | upstream | 168523 | 14961554 ~ 14962003 (+) |
| G13434 | NA | other | upstream | 317902 | 14811771 ~ 14812624 (+) |
| G13391 | NA | other | upstream | 429796 | 14700176 ~ 14700730 (+) |
| G13381 | NA | other | upstream | 450499 | 14679698 ~ 14680027 (+) |
| G13380 | NA | other | upstream | 450948 | 14679350 ~ 14679578 (+) |
| sass6 | sass6 | other | downstream | 300432 | 15447458 ~ 15468011 (+) |
| LOC110490510 | LOC106573976 | other | downstream | 535569 | 15694810 ~ 15716774 (+) |
| LOC118941201 | NA | other | downstream | 1419614 | 16578956 ~ 16592967 (+) |
| LOC110492606 | LOC106573909 | other | downstream | 1757027 | 16916482 ~ 16920945 (+) |
| LOC110492876 | LOC106613263 | other | downstream | 1803585 | 16962997 ~ 16967790 (+) |
