vcam1b (vcam1)


Basic Information

Item Value
gene id vcam1b
gene name vcam1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15294592 ~ 15307175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560886.2
acaaagagagagagagaaagaagagcgagagagagagagacagagaccgagactaGAGGCCACTCAAAGAGTGGGGGAATTCATCCTTGGTATTTTAAGGGGgtgttttaaatatatatttcccCCCTGTTTGTATCCCCCCTATTACAAGTGATAAATCCACAGGCTCTGGATCTGGACACTGGGCAGACCAGACACAACACCCACAGCATAACAAAGGAGGACTAAGGAAATTTACAGTCTAGCTCAATGTCTCTGTTATGGATAGTGATACTACCAGTAACAGCCTTTGCATTTCATGTGGAGCTAAAACCAAAGAGTGCATTTTTCAGAGTTGGTGATAGGCAGGAGCTGCGATGTTCGGTGAAGGATTGTAACGAAAAGGTTACTATGTCCTGGGCTTTGCTGGGGGATAAGCCCATGTTTGCTAAAATACACACCTCAGGATCGGAATCCGTGGCGGCCTTTGACCCTGTGATGACAGTACATGATGACATACTTCTCTGCAAAGTCAGTTGCGGAGCATTGACCAAACAACAGCGTGTGGTTGTCAAAGTGTACTCATTTCCAGAGGCACCTGTCATATCAGGCTACGACCATCTTCTCTTGGGCcagtccaacactctgacatgtGAGGTGATAGATGCTTATCCCGTGGAGCACCTGCGACTTGAGTGGCTGCAAGGAGACAGCATGCTCCAGACAGACGCAGAGTCCGTTGTATCTACCTACAGGTTCACGCCCACCCCAGAGGACAAAGAGGCAATGATCACATGCAGAGCCTCTCACGATCAGGATGGTGTGCCTGATGAAGAGAAGACCAAGGAAACCACCGTATCTCTCACAGTGCTTTATGCGCCACAGAATATATCAATATCTGAGCCGACTGCTGTGAGAGTTGGCTCCAGTCTCACGTTGTCATGCCATGCTGAAGGGAACCCCAGACCAGATACACAGTGGAAGGCCATTGGTCCAGATGGACAGGCTGTTATTGTGGGGCAGAGCGAGGAGCTTGTCCTTACAGAGATGACACTGGTGGATGCTGGTCAATATGAGTGTGTGGTGAGCAACACCATTGGAAACATCACAGCCAGCGTGAACGTCATTGTTCAAGCTCCCCCAACCCACACCACCATCACAGTGAGCCCAGCCAACGAGGTGAAGGAAGGGGAGAGCGTGACGGTGTCCTGCCTGTCGGACGGAGCTCCGGTGGTACGTATGGTGCTGAGGAGACTCTCTGAGGACCAGGATGTAGAACTCCAGTCCAGCAACGGATTCTCCacctccttcaccctctcctctgCCCTGCTAGCAGACTCTGCTCTCTACCAGTGCCAGGCCTTCAATGAACACGGCAGTCAGAAGGTCAGCGCCTTGCTCTCTGTTGAAGAGTATCCCCTGGAGGTGGCGATGGATGTGGGGGTGACGGCTGAGATGGGATCCAACCTGGTGCTCTCCTGCCGGGCTTGGGGCTGTCCCCAGCCAACCTTCTACTGGAGGAGCATGCTGGACATGCCCGTCCATAGCCGTGCACACACCCAGGACtccctctcccagctctacctgggCCCACTTGGGCTGATCAACGAGCAAGCCTACACCTGTGAGGCCAAGTGTGGCTCTGTCATCAAGGCCAAGCACGCTGAGGTCAAGGTCTTCTctTTCCCCTCGGACCCTATCATCGAGAACACTGGCCCCTTTCTGGAACACGGTGTTGGCATCTTTTTTTGTTCGGTAGCCAACGTCTACCCAGCCAGTCTCCTGCAGATCCAGTGGCTTGATGGGGAAATCGAGCTAGCCTCCGAGATGGGACAGTATTCCAGTGAACTCCAGAATGTGACGTCAATGCTTTCTTTCTCGATTGGACCGGAGGACCAGGGCAGACAGATCACCTGCAGAGTCAGTCTTCAGATGGATGAAGTCCctcagagtgggagagagaggcaggcagtgaCTGTACTGGAGCTCCACTATGCCCCCAGGGAAACCACCATCACAGTGAGCCCAGCCAATGAGGTGAAGGAAGGGGAGAGCGTGGCGGTGTCCTGCCTGTCAGACGGAGTTCCGGTGGGACGTATGGTGCTGAGGAGACTCTCTGAGGACCAGGATATGGAACTCCAGTCCAGCAATggctcctccacctccttcaccctctcctctgCCCTGTTAGCAGACTCTGCTCTCTACCGGTGCGAGGCCTTCAATGAGCACGGCAGCCAGCGAGCTAGCACATACATTACAGTCAAAGCACCTCCTAGGAACACAACAGTCCTGATATATCCATCTGCTGAGGTGCAGGAAGGCCAAAATGTCACCATCTGCTGTCACTCTGTCAGTTTCCCCCCACCTGCTGTGGTTTTAAGGAAACTGGATAATGGCACAGAGCTCTACTCCCCGGATGGGAACTTCCTGCTGGTTAACCTTACGCCCAATGATACAGGCCTATACCAGGTGAATGTCACCAATGACCTGGGTTATGAGACCGAGATCTTCAGCATCAACGTCATAGAGAAGCACTCCAGTACTTCACCAGACTGGAACCACGTAGTCATtcctgctgtctgtgtgggtatcATGGTGACCACCACGGGCCTAATCCTGGACTACCTGAGGAGAGCCAGGAGGAAGGGCTTCTATGAGCTGGCAAAGTGTAAGCCCGGGTCTGCATAGACTAGAGGAGTCTAAAACCTGCGGTCCAGAGCCAGATTGTGGCCCCCACTTGTGCTACCAAAATGACCATGTACTGTATGAGTATCACATCGGTGAGTGTTTTGTGGTTCCTCCGGCAAAATGACTTTTACACTGTGTGCAGAGGCATACCAAGGGACAGACCTACCTGGAGTGGAGAGGGAACAGACGAGAGGTTCGTCCTCTGTCAGGTCTCCGTTGAAGGGCAGAGGACAAGGCCGTATGACCTTTGGATGTTACtggaagaggaaaagagaagtACCTTTAAGGAGATGTGGTCTTCTGgatgtttttcatttttattaaacCTAAGCTAGAAGTCAGTCAAATGTTTAATAATCTAACTGTCTGCAACTAACTATCATTTGCTCCTTTTTTCACTTCTTGGCAGCTTTCATTGAACCCATTGATGTCTAAGTGTCACAACTATTGGATGAATGCAATATGTTACATGTTTTTAAACAAAATTATACCATTTGTAATTGGCTGTGATAAAAAGTTGAAATGTTTAATGAGTTAATTACAATGCATTTGAAATGTACAGTTTCAATTAACTTTGTTATATCAGTATGGGAAGGTGGTTTCCCAACAATAGGTGAAGTCGGTATTGTGGTAATGTAATATAGAGAAGCAAGCCAAACTGTATTTGCCTCATAGCTTTTTTTGTACATAGGGGAAACAGTGCCACTGTCCGCCCCCACAGccgttgttattgtttttgttttgttgacgaagAAGAGCTGGGGAGTGTCGTAGTAACAAAAAAATGCAGTACATATGCTGGTGTTCTTTCGCGGGTGCAATCATGTCCACGGCGGTAAAAAAAACAGTGTTTGTTGTTTGCATTAACTTATTTGgttgttgtaatatcgcaaacgGATGTGGCaatttcaccattaaggattccagctttaatgtGGACACTTACTAGAAGTGTTTGCATGTGTGCAATGTGCATGGAGTATTTTTGTCCCACACCATTTTCTTTATTGCTGTGGGATATTATAGCCGGTTTGGTACGTGATTAAAGAAGCTGTTGTTTTTAAATCAAAGCCTATATAGAATGTATTTGTTATGTTTATGACTGTTCATACTCCTTTGTATGTTGTGAATATGTTGTGCCCTATTTTTTGTGAATTGTGTTTTAAATGTACGTTTGTAGAGATGTTCATTATTAAATATTTATTTCCGTAACTAAAA

Function

symbol description
vcam1 Enables integrin binding activity and primary amine oxidase activity. Involved in several processes, including calcium-mediated signaling using intracellular calcium source; cell-cell adhesion in response to extracellular stimulus; and cellular response to amyloid-beta. Located in several cellular components, including early endosome; external side of plasma membrane; and podosome. Part of alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex. Biomarker of several diseases, including artery disease (multiple); diabetes mellitus (multiple); essential thrombocythemia; glomerulonephritis (multiple); and interstitial cystitis.

NR:

description
vascular cell adhesion protein 1-like

GO: NA

KEGG:

id description
K06527 VCAM1, CD106; vascular cell adhesion molecule 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560886.2 True 3888 mRNA 0.48 10 15294592 15307175

Neighbor

gene id symbol gene type direction distance location
LOC110488514 slc30a7 coding downstream 22053 15243620 ~ 15272539 (-)
LOC110488417 LOC106573949 coding downstream 102776 15187973 ~ 15191816 (-)
LOC110488330 LOC106613586 coding downstream 110899 15175297 ~ 15183693 (-)
LOC118940256 NA coding downstream 196987 15087990 ~ 15097605 (-)
LOC110487829 LOC106574071 coding downstream 223694 15069112 ~ 15070898 (-)
LOC110488652 LOC106573980 coding upstream 2768 15309943 ~ 15316397 (-)
LOC110488740 cdc14a coding upstream 18380 15325555 ~ 15394233 (-)
LOC110489111 rtca coding upstream 93334 15400509 ~ 15416750 (-)
trmt13 trmt13 coding upstream 129024 15436199 ~ 15447286 (-)
LOC110489545 mfsd14a coding upstream 167813 15474988 ~ 15491872 (-)
G14189 NA non-coding downstream 73179 15221192 ~ 15221413 (-)
G14188 NA non-coding downstream 73513 15220765 ~ 15221079 (-)
G14185 NA non-coding downstream 78534 15215785 ~ 15216058 (-)
G14183 NA non-coding downstream 80828 15213296 ~ 15213764 (-)
G14162 NA non-coding downstream 109871 15184421 ~ 15184721 (-)
G14264 NA non-coding upstream 97527 15404702 ~ 15407419 (-)
G14268 NA non-coding upstream 110522 15417697 ~ 15418086 (-)
G14289 NA non-coding upstream 138622 15445797 ~ 15498641 (-)
G14360 NA non-coding upstream 219944 15527119 ~ 15527395 (-)
G14120 antithrombin other downstream 120562 15114926 ~ 15174030 (-)
LOC110487385 LOC106574065 other downstream 335324 14955950 ~ 14959313 (-)
G13196 LOC106574055 other downstream 926259 14366290 ~ 14368501 (-)
G13195 fam163a other downstream 945114 14347082 ~ 14349478 (-)
LOC110531395 LOC106613616 other upstream 881829 16181514 ~ 16295527 (-)
G15470 NA other upstream 1223872 16531047 ~ 16531476 (-)
LOC110492105 homer3 other upstream 1553474 16838135 ~ 16871992 (-)
G16100 LOC106573897 other upstream 1824245 17131420 ~ 17136357 (-)

Expression


Co-expression Network