LOC110488652 (LOC106573980)


Basic Information

Item Value
gene id LOC110488652
gene name LOC106573980
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15309943 ~ 15316397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561000.2
cacacacacacacacggtttcctGTCGCCATCATTGTTTCCATTTGGAAATGACTTAAGGAGCCCATAATAACAGGAAAAGATCTAGCTTAGCCATTTTTGGCATCAGAATCATGGAATGTCCAGTCTTTTTAAAGTAAAGGGTACCTTGCACATCGAGTCGCCAAGCTCTGCAGCAAAACTTTACATTCAAGCTCAATATTTTACCTGGATATGAAAAAGATGCAACTTCTTCAACTGTGTGCCTTCTTCTATGTCACAGTCTGTAGTCAGATAGAAGAAGTCGCCATTTCACCTCCTGGGAATGAGGTATTTGTGCTAGCAGGTTCAGCCTTCCAGTTCACCTGTGCTTGCGTTGGTAGTTGTAAGACACCACAGTTCAGCTGGACAAGAGCTACTACTGACTCTGATGGTATGCGAACCAAAAACAGCACTCTCAAATTTTCCAACGTGAAGATTGAGGATGCGGGTCGATATACCTGTGATGCAAAGTGCGATGACAGTTCAGAGAAAAAACTAAAATCTGTCAAGATGACTGTCTATGCTTTTAGTCAACCTGTGTTGGTGATGCCAAGTATTTTGACGGAAAATGTGGCTTGTGATGTAACATGCAGTGTTGATGCATTTGACCACGTTGACAGTGTCCACATAAGCTGGTATCTAGGAAGTGAGCTTATTAAAGATGAAACTCAGCAGACTTTGGATGCAGCTAACGTGTCGGACACACTGACTCTTACTGCCCTGAGGGACTATACTGGGAAGAGTCTGACCTGTGAAGTGAAAGCAGACATGAGAAATAACTCAAAACAGGTTTCTTACTGTCTCGACATACACTATGCACCTAAGATCAACATCAGTGCTTCCTCATctgggatggaagaggaggaagtGGTGATGAGCTGTAGAAGTGACGGCAACCCCACCCCTACTATTGAgtgggagagaaaaggggagctGTGGCCCAAGAATCTGCATCGACACGCACAAGGAAATGTCACGGGCCGGCTACACCGCAGCAACCAAGGGGTTTACCAGTGTGTGGCCAAGAACGTGGTGTCCGAGGTAAAGGAAGAGATGAAACTGGAGGTGCAATACGGACCAGCAAACACAAGTATCCAGTCCTTCCCACAGCAGGCCATTTCCTATGGGGTTCAGCTGAACCTTACCTGCTTGTCAGACATGTACCCCAAAGCCAAACAGTACATCTGGACCAGAATCCCAGATATGGCCCTACCCAAGGAGGCCATGGTTACAAACAGCCATTTAATCATAGATAACTTCCAAGAGCACCACCAAGGCATCTATGAGTGTAGAGTGATTCACCACAGTGGGAATACAGAGAGAGCATTCTATACCGCCTCTGTTCAAGCGGAGCCCGAGTCTAAGGTGTTCACTCAGATGGTGGGTGCAGTGGCTGGCAGTCTTGTCAGCGGAATCACAGGAGGCATCGTGGCAGGATTCATGTTAGCTAAATGGCTGAAGTGATGCTACCTTAAATCACCTCACTGTGTGGGATCTAATCCGGAGCCATTCAGATGGTCTCAACCAGAGTGCCTTATTATCACTTCATACAGCAGAGTTTAATAGCGATTAACGTACAgtactttcagaaagtattcataccacttagtgtattccacattttgttatgttacagcctgaattcaaaatagattaaattgttttttttaataccGATTTAAGTCCAAACTCTAACTAGGGCACCCAGGAatattcaatgttgtcttggtaagaaactgcagtgtatattttgccttgtttttaggttattgtcctgctgaaaggtgaatttgactcccagtatctgttggaatgcagactgaaccaggttttcctctagggttTTGCTTTTGCTTAACTCTATTTCGTTTCTTTTTAACcccaaaaactccctagtccttgctgattacaagcatacccataacatgatgcagctaccacaatgcttgaaaataggaagagtggtacttagtgatgttttgtgttggatttgccccaaacataacgctatgtattcaggacatgaagttaatttctttaccacatGTTTTGCCGTTTTACTTTAGCACCTTTTTGcagacaggatgcatgttttggaaaatgtttattctgtacagacttcctgcTCTaccctctgtcatttaggttagtattttggagttgttgatccatcctcagttttctcttatcacagccattaaactgtgagttaggaaggaagcctgtatctttgtagtgactgggtgtattgatacaccattgtTGGATTCGGGATGAACTCTGAACATTGAGATATAAGCGTTGAATATAAGGAGTGAAAGAGACTGGGTTTTATGTCAGAAGTGAATTGTTTTCTGTAGAAAGAcatggctttggaatgtgttgtGTGTACGGGAGGAGGTCATAGGATTGCTATAGGGGAGCAGATGGATATCTGTGGATTAggcgaaggaggggttgaggtcaggtcagatcccctgaagggaGTAATAAGGGTTTATTACCCTATTACTCTCTTCCTGTggaaccataagatgtaaggattggagagccGGAGGAGTGTCTATAGTGGGGTATATATATTTGTGATGGTGAGAAATGTTATTTTGTCTGAATACAGCTGTAAtgaccctttgggaagaattaaacttgtttaagcttc

Function

NR:

description
vascular cell adhesion protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561000.2 True 2682 mRNA 0.43 6 15309943 15316397

Neighbor

gene id symbol gene type direction distance location
vcam1b vcam1 coding downstream 2768 15294592 ~ 15307175 (-)
LOC110488514 slc30a7 coding downstream 37404 15243620 ~ 15272539 (-)
LOC110488417 LOC106573949 coding downstream 118127 15187973 ~ 15191816 (-)
LOC110488330 LOC106613586 coding downstream 126250 15175297 ~ 15183693 (-)
LOC118940256 NA coding downstream 212338 15087990 ~ 15097605 (-)
LOC110488740 cdc14a coding upstream 9158 15325555 ~ 15394233 (-)
LOC110489111 rtca coding upstream 84112 15400509 ~ 15416750 (-)
trmt13 trmt13 coding upstream 119802 15436199 ~ 15447286 (-)
LOC110489545 mfsd14a coding upstream 158591 15474988 ~ 15491872 (-)
LOC110489707 LOC106573936 coding upstream 215015 15531412 ~ 15551493 (-)
G14189 NA non-coding downstream 88530 15221192 ~ 15221413 (-)
G14188 NA non-coding downstream 88864 15220765 ~ 15221079 (-)
G14185 NA non-coding downstream 93885 15215785 ~ 15216058 (-)
G14183 NA non-coding downstream 96179 15213296 ~ 15213764 (-)
G14162 NA non-coding downstream 125222 15184421 ~ 15184721 (-)
G14264 NA non-coding upstream 88305 15404702 ~ 15407419 (-)
G14268 NA non-coding upstream 101300 15417697 ~ 15418086 (-)
G14289 NA non-coding upstream 129400 15445797 ~ 15498641 (-)
G14360 NA non-coding upstream 210722 15527119 ~ 15527395 (-)
G14120 antithrombin other downstream 135913 15114926 ~ 15174030 (-)
LOC110487385 LOC106574065 other downstream 350675 14955950 ~ 14959313 (-)
G13196 LOC106574055 other downstream 941610 14366290 ~ 14368501 (-)
G13195 fam163a other downstream 960465 14347082 ~ 14349478 (-)
LOC110531395 LOC106613616 other upstream 872607 16181514 ~ 16295527 (-)
G15470 NA other upstream 1214650 16531047 ~ 16531476 (-)
LOC110492105 homer3 other upstream 1544252 16838135 ~ 16871992 (-)
G16100 LOC106573897 other upstream 1815023 17131420 ~ 17136357 (-)

Expression


Co-expression Network