lrrc39 (lrrc39)


Basic Information

Item Value
gene id lrrc39
gene name lrrc39
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15433089 ~ 15437025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950487.1
atttttttttggggggggtggtgCAAATTTGGTCCGAACCTtgcactaggccctccatggaatgagtttgactgcCCTTATCTATAGGAACTGAAAAGTTGTCACCAAACCTGAAAGTAAAGCATGGAGAGAAGTACAGGTTGAACATTTCCAGTATTTATTTATGGCTATTAAAAGGTCTATAGATCACATAGGCCTACAGTCTATTTAAAATGTAACCATCTTTCCATTGACCATAGCTCAATCTTTTAGTCTGTCTTTCGGATTTTGAAACAAATAGAGCTGATCCTAAATTACTCTTATTTCACTCCCTGTTAAACAGAGGACAAACATGTTGCATGGACATTGAAGGTTTTCCACCACAAACTATTTCACTCTATTCTTTCTACCGTCTCCTGAAGGTATGTGTTGTCAGGGGAGACAGAGGTCCATGTGCCAAGTTTAGCATGTGACCACCAACACTATTTTCAGTGTTCTACCCCTGACTAAAATTAGACCTCCTCTAGGGTCACGTTTCATCACCACTGACAGACATGGGACGAGGTCTATTGCTACTCTGTTACAAGATTTTCAAAGCAAAGAAGTTATTATTCCATCAACACAATGGAATACACTGAAGAGATTTGTGAGGAATTTATTACAAGAGTTTTCTTGAAGCAAATTTGTCCAATCTAGAAAGTACTATTTTACCATTTCTTACAGGACTACTACAGCTGTGCTCCAATCGGTTTTGAACTTGCACATTGTGATAGTGCTTCCTTGAACTTTACAGTCTATTTGGTGTGACAGATGTATTTAATCATTTTTGTCAATTATGTGAAAGAGTAATCTCCTCTTGATATGGAAGATGAATGAAGATCCAAATAAAAAACAGGCTACATAATCTTATGTTATCAATCATCATTATGAGTGAGTTTCCTTCTGCAGTGAAGAAATCTGAGCAGAGAATTTCCTGCATCTGTCCTTGTCTAGCTCTGTCCAGCTAATTAAGGGAAGCAGTGATCAACCAGACTCCAGTCCTGTTTTGAGTTGACTGTTTTGGGAGCTGTTTGAACAGTTGGTGTAGGGTCACCATGACCGGGGTGGCAGTGTGCAGTGGCTCCGTCAGCTCTATCAAGTCCCTTTGGGAGACTAGAATTAAGAAAACGAAACAAGATCTGCAGAAGCAACAAGAACAAAGGGCCGGTGTAGGTAGGGTGAGACATAACTGGGAAGATCGGATTATATTGGCCAAGCTGAAAGAGAAGGTGGTGACAGAGGAAGGACGTGTCATTTTAAGGATAGAGAAAGAAGAATGGAAGACTTTGCCTCGAGCCTTGGTTCACTTTCCTCAACTCATGGAGTGGCAGCTTCACAGGGTTGGACTACAGACAATCCCCCGCTTCGTTTCCAGCTTTGAGAATCTGCTTGTTCTTGATCTGTCCCGAAATGCCATCACAGAGATCCCAAAAGAAATTGgtAAACTGACCAGGCTAAGGGAGCTGCTGGTGAGCTACAATAGAGTGCAAAGTGTTCCAGAAGAACTGGGCTGTTGTGAGAACCTGGAGAAACTGGAGCTGGCAATGAACAGGGACCTTGACGAGCTGCCTTCAGAGATTAGCAACCTGAAGAAGCTTTGCCACTTGGATCTCTCCATGAACCAGTTCACAGAGATCCCAGAGAGTGTGGTGAGTCTGCCTGCCCTGGAATGGTTGGATATGGGTGGAAATCGGCTGCAGAGCTTACCACATGACATCCACAGAATGGAGAACCTGCATACTATGTGGCTGCAGAGGAACGAACTAGAGTTCCTGCCTGACAACATATGTTACATGCGAAGCCTGGACACGCTGGTGCTTAGCAACAATAAGCTACATGACATTCCCTCAATGATGGAGGACATGAACAACCTCAGGTTTGTGAATTTCAGAGACAACCCTCTAACATATGAAGTGGAGCTGCCTGCTGCCCCAAAGAAAtctgaggatgaggaagaggatgacaGAGAGATGTTTGGCCGAGATTTCATGCGCGTCTACTGCCAGGAGGCACGGAAAAGAGTTAACGCCATGCTAAATATGCATCGTGTAAATCCACCTGAGTCAAACTACACCTCAGAACTAAATGTGACCCTTGAAGCTGTGGCAGAATCTGCACCGTTACTGTGACCTACTGTAGCAGTCATTCATGTTGGCCTCTGTCGGTTCCTGCCTTGTCTGTTGGTGACTGCCTGGTC
>TU16427
catggaatagacattgaattgacatctgtgtcCAGTGCGTGATGACTAGTGCTTCATGTCAGAACACATTACCTACTGTGtagctttctctctctaggtAAACTGACCAGGCTAAGGGAGCTGCTGGTGAGCTACAATAGAGTGCAAAGTGTTCCAGAAGAACTGGGCTGTTGTGAGAACCTGGAGAAACTGGAGCTGGCAATGAACAGGGACCTTGACGAGCTGCCTTCAGAGGTACCCAACATGGCATGATTGTTGGTTTAACGTTAAAGGGAAACGAAACCctttttcaacttcatattcattctctccagcaccaccccaccatcaacatatgtgaaaagtGTGCTTTTTTA

Function

symbol description
lrrc39 Predicted to enable protein serine/threonine phosphatase activity. Acts upstream of or within cardiac muscle tissue morphogenesis; heart contraction; and sarcomere organization. Predicted to be located in M band. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle. Is expressed in adaxial cell; floor plate; myotome; pectoral fin musculature; and somite. Orthologous to human LRRC39 (leucine rich repeat containing 39).

NR:

description
leucine-rich repeat-containing protein 39

GO:

id name namespace
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0045214 sarcomere organization biological_process
GO:0060047 heart contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950487.1 False 2215 mRNA 0.44 8 15433089 15437025
TU16427 True 356 lncRNA 0.40 1 15434961 15435316

Neighbor

gene id symbol gene type direction distance location
LOC110489303 dbt coding upstream 325 15425122 ~ 15432764 (+)
LOC118966767 NA coding upstream 1448 15431509 ~ 15431641 (+)
LOC110529632 dph5 coding upstream 191923 15192649 ~ 15241166 (+)
LOC110488261 antithrombin coding upstream 261674 15163316 ~ 15171415 (+)
LOC110488062 LOC106613585 coding upstream 273617 15130526 ~ 15159472 (+)
sass6 sass6 coding downstream 10433 15447458 ~ 15468011 (+)
LOC110489630 LOC106573979 coding downstream 71737 15508762 ~ 15521789 (+)
LOC118944451 NA coding downstream 115090 15552115 ~ 15555470 (+)
LOC110489937 mepd coding downstream 158288 15595313 ~ 15606479 (+)
LOC118966758 NA coding downstream 162065 15599090 ~ 15599215 (+)
G13956 NA non-coding upstream 11284 15421591 ~ 15421805 (+)
G13908 NA non-coding upstream 19844 15340394 ~ 15413245 (+)
G13907 NA non-coding upstream 90469 15342280 ~ 15342620 (+)
G13890 NA non-coding upstream 109121 15317312 ~ 15323968 (+)
G13865 NA non-coding upstream 150226 15282659 ~ 15282863 (+)
G14359 NA non-coding downstream 91305 15528330 ~ 15528643 (+)
G14365 NA non-coding downstream 93976 15531001 ~ 15531361 (+)
G14415 NA non-coding downstream 174048 15611073 ~ 15611634 (+)
G14417 NA non-coding downstream 178280 15615305 ~ 15615517 (+)
G14418 NA non-coding downstream 178546 15615571 ~ 15615837 (+)
G13639 NA other upstream 471086 14961554 ~ 14962003 (+)
G13434 NA other upstream 620465 14811771 ~ 14812624 (+)
G13391 NA other upstream 732359 14700176 ~ 14700730 (+)
G13381 NA other upstream 753062 14679698 ~ 14680027 (+)
G13380 NA other upstream 753511 14679350 ~ 14679578 (+)
LOC110490510 LOC106573976 other downstream 258016 15694810 ~ 15716774 (+)
LOC118941201 NA other downstream 1142061 16578956 ~ 16592967 (+)
LOC110492606 LOC106573909 other downstream 1479474 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 1526032 16962997 ~ 16967790 (+)

Expression


Co-expression Network