sass6 (sass6)


Basic Information

Item Value
gene id sass6
gene name sass6
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15447458 ~ 15468011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561923.2
TACTTCCGTCGCCTCTTTCTCAAGTGGATGTTTCCCCAACGGTTATTCGCGGGAGAGAAGCGCCAAACTCGAAATTGAAGAGACTATTCTTTTTTTTAACCAAGGCCATACAAATCTAACCTTGGAATTTGCAATTTAGACACTACATTTTTGGGAGTATGAAACAATCATGACAGAAACACTTTTCAACAAGCGATTGCAAGTGCACGTCAAATGCAAAGATTGCGAAGAAAGGAGAGGAAATATCAGAGTCGGCATTGAGCTTCAATTAACAACTAATCCAGTCCACAAAAGGGATCTGCTGGTGAGACTGACAGATGACACTGACCCTTATTTTCTGTACAACCTTGCCATATCAGAAGAGGATTTTCAAAGTTTGAAAGTTCAACAGGGCCTGTTGGTAGACTTTGCATCCTTTCCTCAGAAGTTTATAGACCTGCTAAACCAGTGTATCTCGGAGCAAGACAAAGAGAATCCAAGATTTCTGCTCCAGTTGTCATCGCCATCATCCCCAGTATTAGACCACAGCCCTGCCAACCTCAATGTTGTGGAGACCAATGCATTCAAGCACCTCACTCACCTGTCTCTGAAGCTGCTACATGGCACTGATGTGGAGATCAAGAAGTACCTGGCAGTTTGTCTCTCCTGTGTGAAGGAGGAGAAGCAGCAGTTGGAACAGAGGCTGAAGAAGACAGAAGATGATCTCTCGAGGCAGCTCAGCTACACACAACAGACTCTGTCGGAGAAGAGCAGAGAGCTAGACAAGCTTCGGTCTGAGTGGACCAGCCAAACAAGCGCTCTGTCGAGCCGCCACTCTCAGGACCTCACTGCAGAGCGGGAGAATGCTTTGGAGACACAAACCAGGCTGCAGCAACAAAACGAGCAGCTGCGCCGGGAGCTGGAGGGGGCCCACACTAAGAGCACCCAGCAGCTGCAGAGCAGGCTGGCCGAGCTTGAGACCTCCAACAGGGACCTGACTGAGAAGAGATACAAGAGCGAGTCTACCATCCGCGACTTCAAAGCCAAACTAGTGGGACTGGAAGAGGAGTCTCAGCGAGCGAAGCAGCAGGCCCTGTCTCTTCGGAGGGAGAATGGCACCCTGGACACAGAGTGTCACGAGAAGGAGCGTCAGGTGAACCAGCTGCAGACACGCGTGGCAGTCCTGGAGCAGGAGATGAAAGATAAGGAGCAGCTCGTGCTCCGCACCAAGGAAGTGCTAGAAGCCACTCAGCAACAGAAGaacTCAGTTGAAGGAAATGCCGAAAGCAAACAACTCCAAATGGGAAAACTGGAAGCCACAGTGAAATCCCTATCTGAGGAACTCATAAAGGCCAATGGCATCATCAAGAAGCTGCAGGGAGAGCTGAGGGGCCTGGTGGGGAAGATCAAGGTGAAGAACACTGTGATGGTGTCTCAGGAGAAGGTGCTTCAGGAGACCCAGGAGAGGCTGCACAAAGCCCAGAGAGACCTGCAGGACACTCAGCAGCAGCTCAAGCATAGAGACGAGGAGGTGTCGAAATTGAAGGAGCAGTTGGAGGAGACGGTTCAGAAATTAGATGAAAGCAGGGAGGTGCTGAAAACAAACGAGAATGTTATAATGTGGCTGAACAAACAGCTGAATGAGAACCAGTTATCCAGGAAGCCGGAGACCCTTGGAACGTTTGAGACTCCTTCAACTCTCTCAGCCTCAACTGGACAGAGGATGGGCAGTGCATCTCACAACATGCTGGACAGCCGAGCGTTTCCCTCCTCGGCCGGACAGGGCTACCCCATCACGTCCACGCTGAACTCCAAACTCCCTCTGTCCAGCCGCTCCGTCTTCTCACTACACAACCAGGGCCCTGGAGCCAAGGTCCAGTTTAACCCGATGAGTACCAAGCCTGGCATGTCTCCTGTGGATGTGAGGGATGGGAGCCCCACAGCACAGCATCCCCCTCAGCCCTCCAACAAAGAGAATGGTGAGCCTGCTGGGTTGGAGTCCAAGTACTTTGAGAAGCGAGACGACAGCATTCCCCTCCGTGGTCTGTTGTCTGGCATGCACCTCAACAGAGATGTTCCAAGGCCACCACCAGCCAAGCCTGGCCTGCACCCTCTGTCGTCCGCTTACTTCCCTGGCTGAGAAGGAATGGAGCCAAGAACTACTGTAATGTCCACTCCACAACACACCACTGAATACCACTGTGACTAAGGAGAGTGAATTGTTTGACCAACCACAGATTCTCACAGTACCTCCGcctatgttaatgtttttaacCTGTGCTGTGTTTCCAAGTATTTTTTAAAAAGACAACCAATCAATAGTAATTAAGCCACTTGATCGGTTTGCCAAATATTACGTTTGTtggtttgtttaaaaaataactttGTTGTCACGTCTTACTCGTAATTAGCATTGACATAACTAATGCTGTCATCATGTTGCTCTGGGTGTCTTCATAACTTTTAACACTCAATAGTACTCAAATCCTGGTACGAATGATACATTCTACCAATGAGTTTCCCTCAAGAAAAGCTGCCGTCTGTTCTCATGGTGCAACAATTTGATAAAAGATAACCAGAGAAAAGTTAACATGTACATGCTAATCGGAAGTCATCACCAGCGTATTGATGAACAGAGCATGAACCACAGAATGATTGCTACTGAAGTGTTTGCTGTTTAAAAACTGTACATATGGGTGTATGAAATTAATcattaatgtgtgtgtatatctgtagATTAAAGTTTTGTTTTCAGAA
>TU16507
GCTTGAATTCAGACTTTTTTGTTGACCTGGACTGAATTGCAGGTCCAGTTTAACCCGATGAGTACCAAGCCTGGCATGTCTCCTGTGGATGTGAGGGATGGGAGCCCCACAGCACAGCATCCCCCTCAGCCCTCCAACAAAGAGAATGGTGAGCCTGCTGGGTTGGAGTCCAAGTACTTTGAGAAGCGAGACGACAGCATTCCCCTCCGTGGTCTGTTGTCTGGCATGCACCTCAACAGAGATGTTCCAAGGCCACCACCAGCCAAGCCTGGCCTGCACCCTCTGTCGTCCGCTTACTTCCCTGGCTGAGAAGGAATGGAGCCAAGAACTACTGTAATGTCCACTCCACAACACACCACTGAATACCACTGTGACTAAGGAGAGTGAATTGTTTGACCAACCACAGATTCTCACAGTACCTCCGcctatgttaatgtttttaacCTGTGCTGTGTTTCCAAGTATTTTTTAAAAAGACAACCAATCAATAGTAATTAAGCCACTTGATCGGTTTGCCAAATATTACGTTTGTtggtttgtttaaaaaataactttGTTGTCACGTCTTACTCGTAATTAGCATTGACATAACTAATGCTGTCATCATGTTGCTCTGGGTGTCTTCATAACTTTTAACACTCAATAGTACTCAAATCCTGGTACGAATGATACATTCTACCAATGAGTTTCCCTCAAGAAAAGCTGCCGTCTGTTCTCATGGTGCAACAATTTGATAAAAGATAACCAGAGAAAAGTTAACATGTACATGCTAATCGGAAGTCATCACCAGCGTATTGATGAACAGAGCATGAACCACAGAATGATTGCTACTGAAGTGTTTGCTGTTTAAAAACTGTACATATGGGTGTATGAAATTAATcattaatgtgtgtgtatatctgt

Function

symbol description
sass6 Acts upstream of or within several processes, including embryonic cleavage; microtubule cytoskeleton organization; and spermatogenesis. Located in centrosome. Is expressed in blastomere and unfertilized egg. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 14. Orthologous to human SASS6 (SAS-6 centriolar assembly protein).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561923.2 False 2736 mRNA 0.48 17 15447458 15468011
TU16507 True 903 TUCP 0.42 3 15459904 15467988

Neighbor

gene id symbol gene type direction distance location
lrrc39 lrrc39 coding upstream 10433 15433089 ~ 15437025 (+)
LOC110489303 dbt coding upstream 14694 15425122 ~ 15432764 (+)
LOC118966767 NA coding upstream 15817 15431509 ~ 15431641 (+)
LOC110529632 dph5 coding upstream 206292 15192649 ~ 15241166 (+)
LOC110488261 antithrombin coding upstream 276043 15163316 ~ 15171415 (+)
LOC110489630 LOC106573979 coding downstream 40751 15508762 ~ 15521789 (+)
LOC118944451 NA coding downstream 84104 15552115 ~ 15555470 (+)
LOC110489937 mepd coding downstream 127302 15595313 ~ 15606479 (+)
LOC118966758 NA coding downstream 131079 15599090 ~ 15599215 (+)
LOC110490377 LOC106573932 coding downstream 154507 15622518 ~ 15636224 (+)
G13956 NA non-coding upstream 25653 15421591 ~ 15421805 (+)
G13908 NA non-coding upstream 34213 15340394 ~ 15413245 (+)
G13907 NA non-coding upstream 104838 15342280 ~ 15342620 (+)
G13890 NA non-coding upstream 123490 15317312 ~ 15323968 (+)
G14359 NA non-coding downstream 60319 15528330 ~ 15528643 (+)
G14365 NA non-coding downstream 62990 15531001 ~ 15531361 (+)
G14415 NA non-coding downstream 143062 15611073 ~ 15611634 (+)
G14417 NA non-coding downstream 147294 15615305 ~ 15615517 (+)
G14418 NA non-coding downstream 147560 15615571 ~ 15615837 (+)
G13639 NA other upstream 485455 14961554 ~ 14962003 (+)
G13434 NA other upstream 634834 14811771 ~ 14812624 (+)
G13391 NA other upstream 746728 14700176 ~ 14700730 (+)
G13381 NA other upstream 767431 14679698 ~ 14680027 (+)
G13380 NA other upstream 767880 14679350 ~ 14679578 (+)
LOC110490510 LOC106573976 other downstream 227030 15694810 ~ 15716774 (+)
LOC118941201 NA other downstream 1111075 16578956 ~ 16592967 (+)
LOC110492606 LOC106573909 other downstream 1448488 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 1495046 16962997 ~ 16967790 (+)
LOC110495874 LOC106573877 other downstream 2186196 17654164 ~ 17673094 (+)

Expression


Co-expression Network