LOC110489874 (LOC106573978)


Basic Information

Item Value
gene id LOC110489874
gene name LOC106573978
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15557864 ~ 15580110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562869.2
TAGGCTATGTGGTTCCTCAGAATCGCCCCACTCCAGAAGAATTTGACGGTCTTCCCAGTGAAGGACTTGGAACTATGGAGGAGCTACTACTGCCCACTGAACGCGAGGAGACGCACTCCAACAATAGCTCATATTCTCCAAGAGGAGAAACCATGTACCAACGTATCAATAGATTTCTCCATGGGGCTTTTGTTGATGACTTGAAACAGTGGTTAAGGGGCTACGTGAAGCGCAACGGCTTGCTGACGCTCTCGGTATTTGCCGTGTTGACGGGCTGTGTCCTGGGGGCTGTGTTAAGAGGGAGCCATCTCTCTACCCAGGCTAAGATATATTTCTCGTTCCCTGGAGAGCTTCTCATGAGAATGCTCAAAATGCTTATCCTCCCCCTCATCACATCCAGTTTAATGTCAGGACTGTCATCCATGGAGCCCAAAGCCTGTTGTCGTGTGGGTGTTCTCACTGTGACCTACTACCTGTGGACCACCTTCATTGCGGTGGTGGTGGGTATCCTGCTGGTGATCATCATCAAGCCTGGGGTGGGCACCGAGATGGACAGCATCAGGCTAGGAGGAGGGCCCGTCATGACTTCTGCTGATGCCTTGCTAGATCTCATCAGGAATATGGTTCCTTCCAATCTTATTGAGGCAACATTTCAGCAGTACAAAACAGATCTGGTTCCTATCCTAAAAGTCTCCAGGGTCACAGTGCAGCCCGACTTTGTGTACGCCATACCTGATGAAAGTGACCCCAGTGGTCGGACGGTGTTCCTGGAGCTCACTCCACCCCCTGAGATCCACTACAAGACCAGACCTGGCAACAGCCAACAGATGAATGTGCTGGGGATCGTCATCTTCTCTGCCACTATGGGGCTGTTGCTGGGGAAAATGGGCGAAAGAGGAGCACCACTAGTCAACGTGTGTCAGTGCGTCAACGAATGTGTCATGAAAATCACCAACACTGCTGTTTGGTATTTTCCATTTGGGATCATATTCCTCGTAGCTGGAAAAATCCTGGACATGCAGGACCCATCTAATCTTGGGAAGAAGCTGGGCTGGTACACCATCACTGTTCTGGCCGGGCTGTTTGTTCACGgcctcatcctcctccccttcttctacCTTGTCCTGACTCAGAAAAACCCCTTCACTTATATCAGAGGCCTGCTACAAGCCTTGGTCATAGCACTGGCCACCTCCTCAAGttctGCCACTCTACCCATCACTATGAAGTGCTTGCTGGAGAACTGCAATGTGGATCGGCAGATAGCACGCTTTGTGCTGCCTGTGGGGGCCACCATCAACATGGACGGAACGGCTCTTTATGAGGCCGTGGCGGCCATCTTTATTGCCCAGGTCAACGATTATGAGCTGGACTTTGGCCAGCTGGTCACCATTAGTATAACAGCTACAGCTGCCAGCATAGGTGCTGCTGGGATTCCCCAGGCCGGCCTCGTTACCATGGTCATTGTCCTGACATCAGTGGGTCTGCCACCTGATGACATCACCCTCATTGTGGCCATCGACTGGGTGTTGGACCGATTCCGAACCATGATCAACGTGCTTGGAGATGCCCTGGCAGCAGGAATCATCGGCCACTTATGTCGGAAAGACTTTCCTCGCGGTGGTACTTACAAGTCACAGCCTTCATACGGCACACAGAACAAACACAACTTGCACGACATGCAGAATGGCATGCCACTGACCGAGTTGCCTTTGCACAAGCAAGACTGTTGTTATGAGGTGATGGAAGACACAGTCAACGAGAGCCCCACTATATACTACAATATCTGTCAAGTTTAACTCCTGGGAACACGCTAACCTCAAATGCTGGACGTTTTGGAGCGCTTTTCCTCCACCTCTGCCATGAAACAGTATTAAACTGCTGTCATCTACTCCTTTTTTTGTGACTGAACATTTTGTTCCACTTTGATGGCGACACTGCAAAGGTCAAATCAGTGTTTtacacaaatatttttttaaatatattttttaacagtGATGAGTTAGGAATTGCCCCATTCTACCACTACCATCTTATTAACTCGGCTCATCCAACATCAAGTGGATTCCCTggatgtttttatttgatttattattgTTCTCTACTGAACTGTTCCTCATCATGATCCATGTGTTTATAACTACATCCATTTTGAACAACTTTATTGGGAGTCGTAGACTATGTGCGTTATTGATTTGTTTGACAAGCATAGGAAGTATTGTATGGTCATATTGTACATTCTGGGTCAATTGCAATGAACTCATATTTAACTCAACTAAATCTTCCTTTTAATGTACCTAACATTTAGTGGCAGTTTCAACCATCTCTAAATGCAATAAAGTACAGGGAGAAATGCTGTAAAATTCAAAACACCTCCTCTGATTATCTTTGTATATGAGCCCACTTTATTAATATTCATAGACtttcaaaaaacaaaatgtaGTGTTGccttaaataaaatatttaatttatCATCTACACAGACACCAACCATTTTGTCTGCCAACACATAAGCAAACATTCCTCCCTTAATCCTAGCAACATATTACTTTAGGAATAACATTGTTTCTCCAGATTCATTTATTGTACATATTTTGATaaacatatttttgttgttgatttcaagTGATTTCTGGTCTATTTATATTTTGCTATAAAATGCAACACCAACATGGACTTGAGttccttcccactgggcacaaactgaatgaatcaacattgtttcaacgtCATTTGTCAACATATTTAGACATGGAATCTACATgtaaaatacatttcatttgaaaaaaagtcaacataaactgttctgagggtgaaatttcaactaCAAGATTATGTCATCATGGGAACCAATTTTCAACCTTGTATAGAATTTGTACCTTTGAACAATGTCAGATCGTCAtcgttatatccactatcagagagagaaaacaataggctgggcagcacctcctactggatagttgatctatctacagctatccATTTGGTCTCCCCTCCAGGGTTTTAACTAAAACCAGCCCTGCTTAGCATTGATATTGGTTactgactactaccaatgtgctatcCTGAGAATTATTTTTGAGAGACCTCTTTATATCTGGTTCTATCGAAGTCATACCGAAGGATTGATTTAGcagagcaaattaaatgtaaccatactCTATAAGTCATATATAATCAatgatactatactgaacaaaaaatatgaaggcaaaatgtaaagtgtaggtcccatgtttcatgagctgaaataaaagatccca

Function

NR:

description
excitatory amino acid transporter 5-like

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG:

id description
K11102 gltP, gltT; proton glutamate symport protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562869.2 True 3266 mRNA 0.44 11 15557864 15580110

Neighbor

gene id symbol gene type direction distance location
LOC110489707 LOC106573936 coding downstream 6371 15531412 ~ 15551493 (-)
LOC110489545 mfsd14a coding downstream 65992 15474988 ~ 15491872 (-)
trmt13 trmt13 coding downstream 110578 15436199 ~ 15447286 (-)
LOC110489111 rtca coding downstream 141114 15400509 ~ 15416750 (-)
LOC110488740 cdc14a coding downstream 163631 15325555 ~ 15394233 (-)
LOC110490068 LOC106573935 coding upstream 1942 15582052 ~ 15587380 (-)
LOC110490009 LOC106573934 coding upstream 8822 15588932 ~ 15595305 (-)
zgc:113223 LOC106573933 coding upstream 36336 15616446 ~ 15621641 (-)
LOC110490301 LOC106573931 coding upstream 58861 15638971 ~ 15682862 (-)
ga45b LOC106573930 coding upstream 325074 15905184 ~ 15907139 (-)
G14515 NA non-coding downstream 1904 15555713 ~ 15555960 (-)
G14362 NA non-coding downstream 28620 15528977 ~ 15529244 (-)
G14360 NA non-coding downstream 30469 15527119 ~ 15527395 (-)
G14289 NA non-coding downstream 59223 15445797 ~ 15498641 (-)
G14268 NA non-coding downstream 139778 15417697 ~ 15418086 (-)
G14532 NA non-coding upstream 31796 15611906 ~ 15612130 (-)
G14504 NA non-coding upstream 42771 15622881 ~ 15636124 (-)
G14534 NA non-coding upstream 48014 15628124 ~ 15698059 (-)
G14610 NA non-coding upstream 180366 15760476 ~ 15760683 (-)
G14622 NA non-coding upstream 190480 15770590 ~ 15770852 (-)
LOC110488330 LOC106613586 other downstream 374322 15175297 ~ 15183693 (-)
G14120 antithrombin other downstream 383834 15114926 ~ 15174030 (-)
LOC110487385 LOC106574065 other downstream 598596 14955950 ~ 14959313 (-)
G13196 LOC106574055 other downstream 1189531 14366290 ~ 14368501 (-)
LOC110531395 LOC106613616 other upstream 608894 16181514 ~ 16295527 (-)
G15470 NA other upstream 950937 16531047 ~ 16531476 (-)
LOC110492105 homer3 other upstream 1280539 16838135 ~ 16871992 (-)
G16100 LOC106573897 other upstream 1551310 17131420 ~ 17136357 (-)
G16161 LOC106573901 other upstream 1675126 17255236 ~ 17257241 (-)

Expression


Co-expression Network