LOC110490009 (LOC106573934)


Basic Information

Item Value
gene id LOC110490009
gene name LOC106573934
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15588932 ~ 15595305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563124.2
gagGCACGCACACTGACGTAAGGACGCATGCTTCAGCCTACGCAGATATGACGCGTCACACATGCGACGAAAATCAACACATTTTTTCCCCCATCACCACCAGCTAACGTTACTGCAAGGAACGTCTGAAGCAAAGGCAACTGGGTCCCTCGCAATACACATTCTACTGAGAGGTTTGGACCTCAATCCAAAATGACAGACACAAAGCGTCTTGCCATCTCCATCATTCAGTTTCTTCATGATCAACTGGGCTCTGGGAGTCTATCGTCAGATGCTCAGGAAAGTTTAGAAGTTGCAGTCCAATGCCTGGAGACTGCCTTTGAGGTCTCGACCGATGACCAGACCCTATCTGTCACTCAAACATTACCAGAGATTTTTGCCTCTGCGACACAGAAGCATCCCGAAACCTCCCAGGTGAAAATAAACACAGCCACAGATTCCTCTACTGAGGAGGAAGtagcagaggcagagagactcAAAACTGACGGCAATGATCAAATGAAGGTTGAGAAATTTGGGGCAGCTGTGGAATTCTACTCAAAGGCTATTGCCATAAACCCCCGGAATGCAGTCTACTACTGCAACAGGGCTGCTGCATACAGCAAACTAGGCAACTACGCTGGAGCAGTTCAGGACTGTGAACTTGCCATTGGGATTGACCCAAACTACAGCAAAGCATATGGAAGAATGGGGTTGGCTCTAGCCAgtttaaacaaacacacagaagcTGTAGGTTATTACAAGAAAGCCCTAGAGTTGGACCCAGAGAACGACACCTACAAATCCAACCTGAAAATAGCAGAGCAGAAAATGGAGACTCCAAGCCCGacaggaggaatgggaggagttGATCTGGCTGGTTTGCTCAGTAACCCTGGTTTCATGAACATGGCGTCCGGTTTGATGAACAACCCACAAGTACAGCAAATGATGTCGGGGATGATGTCAGGAGCTTATGGGCCAATGGGAGCTCCAGCAGTGCCTGGGTTAGGagcagggtcagggttaggagccGGACCAGGGTTAGGAGCCGGACCATTAGGAGCTGGACCAGGGTTAGGAGCCGGACCGGCAGCAGGAGTTGGAGTAGTGGGAGCTGGTCCAGGTGACATTTCTGGTCTCATCCAAGCGGGCCAACAATTTGCGCAGCAAATGCAACAGCAGAACCCAGAGCTAATTGAACAGCTGAGGAGTCAAATTCACAGCCGGACACCTAGTGGTAGCAACGAAGAACAACCTTGACCCTCAGACAGAGGAAGATTTGTGTGGAGAAGTGAagacatggattttttttttctatgTATGATTTGTATTATCTCCCAACTCTATGGACAAAAAGCTTTTCATCACTGAGTAATTATTGCATGTGTGCTCCACCCCCCCTGTCTTTAAGGAAACTGATCAGCAAAACCTTGCGGGAATGATGGAATTTGATAAACCTGTTAACAGATATCTAGTCCGAAGTGTCTGCAATGTCACACCAGTGTAGCTCTTGGTTTAGCTGTTTAATGTTACTATTCCTTGCCAGTGAACTGTTGTCCGAactgaacacccccccccccccccccccccgtgaacTACATGCAGCTGCATCACTTGAGCTTTATCATTTCAGGTACACAGAAACACCTTGAGATTATTATGCGATGATACAGTTTAGCAGTCATATAAATTTGAGAAGCATCTATTTGTACAAAGAAATACTGGTTGGCAGGGATGGTATCTAGAGTACTGGCAATATTATGGGAATTTCAAATTAGCATATCAAATAGGACCTATTGGTGTCCTCCGTAATCCAGGAGTTGTTTAAGCATGATACactgtttttgttattttataaTGCGAATGTCAGTGTTACACTGTTTGGGTTTTTTTCTAACGTGGGTGGCTGTCTGTTTTTGTTCACAATCTTTGATTAAATCATACTAATAAATTACCCTAACATGT
>XR_005037302.1
ttggagGCACGCACACTGACGTAAGGACGCATGCTTCAGCCTACGCAGATATGACGCGTCACACATGCGACGAAAATCAACACATTTTTTCCCCCATCACCACCAGCTAACGTTACTGCAAGGAACGTCTGAAGCAAAGGCAACTGGGTCCCTCGCAATACACATTCTACTGAGAGGTTTGGACCTCAATCCAAAATGACAGACACAAAGCGTCTTGCCATCTCCATCATTCAGTTTCTTCATGATCAACTGGGCTCTGGGAGTCTATCGTCAGATGCTCAGGAAAGTTTAGAAGTTGCAGTCCAATGCCTGGAGACTGCCTTTGAGGTCTCGACCGATGACCAGACCCTATCTGTCACTCAAACATTACCAGAGATTTTTGCCTCTGCGACACAGAAGCATCCCGAAACCTCCCAGGTGAAAATAAACACAGCCACAGATTCCTCTACTGAGGAGGAAGtagcagaggcagagagactcAAAACTGACGGCAATGATCAAATGAAGGTTGAGAAATTTGGGGCAGCTGTGGAATTCTACTCAAAGGCTATTGCCATAAACCCCCGGAATGCAGTCTACTACTGCAACAGGGCTGCTGCATACAGCAAACTAGGCAACTACGCTGGAGCAGTTCAGGACTGTGAACTTGCCATTGGGATTGACCCAAACTACAGCAAAGCATATGGAAGAATGGGGTTGGCTCTAGCCAgtttaaacaaacacacagaagcTGTAGGTTATTACAAGAAAGCCCTAGAGTTGGACCCAGAGAACGACACCTACAAATCCAACCTGAAAATAGCAGAGCAGAAAATGGAGACTCCAAGCCCGacaggaggaatgggaggagttGATCTGGCTGGTTTGCTCAGTAACCCTGGTTTCATGAACATGGGCTGCTTTGTCCTAGGCGTCCGGTTTGATGAACAACCCACAAGTACAGCAAATGATGTCGGGGATGATGTCAGGAGCTTATGGGCCAATGGGAGCTCCAGCAGTGCCTGGGTTAGGagcagggtcagggttaggagccGGACCAGGGTTAGGAGCCGGACCATTAGGAGCTGGACCAGGGTTAGGAGCCGGACCGGCAGCAGGAGTTGGAGTAGTGGGAGCTGGTCCAGGTGACATTTCTGGTCTCATCCAAGCGGGCCAACAATTTGCGCAGCAAATGCAACAGCAGAACCCAGAGCTAATTGAACAGCTGAGGAGTCAAATTCACAGCCGGACACCTAGTGGTAGCAACGAAGAACAACCTTGACCCTCAGACAGAGGAAGATTTGTGTGGAGAAGTGAagacatggattttttttttctatgTATGATTTGTATTATCTCCCAACTCTATGGACAAAAAGCTTTTCATCACTGAGTAATTATTGCATGTGTGCTCCACCCCCCCTGTCTTTAAGGAAACTGATCAGCAAAACCTTGCGGGAATGATGGAATTTGATAAACCTGTTAACAGATATCTAGTCCGAAGTGTCTGCAATGTCACACCAGTGTAGCTCTTGGTTTAGCTGTTTAATGTTACTATTCCTTGCCAGTGAACTGTTGTCCGAactgaacacccccccccccccccccccccgtgaacTACATGCAGCTGCATCACTTGAGCTTTATCATTTCAGGTACACAGAAACACCTTGAGATTATTATGCGATGATACAGTTTAGCAGTCATATAAATTTGAGAAGCATCTATTTGTACAAAGAAATACTGGTTGGCAGGGATGGTATCTAGAGTACTGGCAATATTATGGGAATTTCAAATTAGCATATCAAATAGGACCTATTGGTGTCCTCCGTAATCCAGGAGTTGTTTAAGCATGATACactgtttttgttattttataaTGCGAATGTCAGTGTTACACTGTTTGGGTTTTTTTCTAACGTGGGTGGCTGTCTGTTTTTGTTCACAATCTTTGATTAAATCATACTAATAAATTACCCTAACATGT

Function

NR:

description
small glutamine-rich tetratricopeptide repeat-containing protein alpha-like

GO: NA

KEGG:

id description
K16365 SGTA; small glutamine-rich tetratricopeptide repeat-containing protein alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563124.2 False 1947 mRNA 0.46 12 15588932 15595302
XR_005037302.1 True 1966 mRNA 0.46 12 15588932 15595305

Neighbor

gene id symbol gene type direction distance location
LOC110490068 LOC106573935 coding downstream 1552 15582052 ~ 15587380 (-)
LOC110489874 LOC106573978 coding downstream 8822 15557864 ~ 15580110 (-)
LOC110489707 LOC106573936 coding downstream 37439 15531412 ~ 15551493 (-)
LOC110489545 mfsd14a coding downstream 97060 15474988 ~ 15491872 (-)
trmt13 trmt13 coding downstream 141646 15436199 ~ 15447286 (-)
zgc:113223 LOC106573933 coding upstream 21141 15616446 ~ 15621641 (-)
LOC110490301 LOC106573931 coding upstream 43666 15638971 ~ 15682862 (-)
ga45b LOC106573930 coding upstream 309879 15905184 ~ 15907139 (-)
LOC110530936 LOC106573926 coding upstream 381071 15976376 ~ 15990475 (-)
LOC110490953 LOC106613612 coding upstream 400131 15995436 ~ 16075800 (-)
G14515 NA non-coding downstream 32972 15555713 ~ 15555960 (-)
G14362 NA non-coding downstream 59688 15528977 ~ 15529244 (-)
G14360 NA non-coding downstream 61537 15527119 ~ 15527395 (-)
G14289 NA non-coding downstream 90291 15445797 ~ 15498641 (-)
G14268 NA non-coding downstream 170846 15417697 ~ 15418086 (-)
G14532 NA non-coding upstream 16601 15611906 ~ 15612130 (-)
G14504 NA non-coding upstream 27576 15622881 ~ 15636124 (-)
G14534 NA non-coding upstream 32819 15628124 ~ 15698059 (-)
G14610 NA non-coding upstream 165171 15760476 ~ 15760683 (-)
G14622 NA non-coding upstream 175285 15770590 ~ 15770852 (-)
LOC110488740 cdc14a other downstream 248051 15325555 ~ 15394233 (-)
LOC110488330 LOC106613586 other downstream 405390 15175297 ~ 15183693 (-)
G14120 antithrombin other downstream 414902 15114926 ~ 15174030 (-)
LOC110487385 LOC106574065 other downstream 629664 14955950 ~ 14959313 (-)
G13196 LOC106574055 other downstream 1220599 14366290 ~ 14368501 (-)
LOC110531395 LOC106613616 other upstream 593699 16181514 ~ 16295527 (-)
G15470 NA other upstream 935742 16531047 ~ 16531476 (-)
LOC110492105 homer3 other upstream 1265344 16838135 ~ 16871992 (-)
G16100 LOC106573897 other upstream 1536115 17131420 ~ 17136357 (-)
G16161 LOC106573901 other upstream 1659931 17255236 ~ 17257241 (-)

Expression


Co-expression Network