LOC110489937 (mepd)


Basic Information

Item Value
gene id LOC110489937
gene name mepd
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15595313 ~ 15606479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562998.2
tttgtggctgtggtaactaaggGAAACATCAGTGGTCAAAACCCCTAATCGCTGAATTGGCATCGTCAACCACAGGCTGTAAAACTCACCGCGAACGTTGCTTCTCAGATTTCTGAAATATGGCACCGACAGGAGAGGTGGCGTCTGGCAGTGGTGCGCGAGTGTGTGCTGACAACCGCCTGCGCTGGGACCTGACCCCCGAGCAAATCCATCAGCTCTCAGATGAGCTTATTGACAAGACCAAAAAGGTGTATGACTGTGTTGGGGCCCTGGACCTGGCCAGTGTTTCCTATGAGAACACCCTGAAATCCCTCGCTGATGTAGAGGTGGAGTACACAGTTGAGCGCAATATGCTGGACTTCCCTCAGCACGTGTCCTCCTCCAAGGACGTACGCACGGCCAGCACCGACGCTGACAAGAAGCTGTCCGAGTTTGACGTGGAGATGAGCATGAGGGAGGACGTCTACCAGAGGATCGTGGCACTGgagGGGAAGCTTGACGCTGACACGCTCACTGATGAATCCAAGAGGTACATGGAGAGGCTGATCAAGCTGGGCCAAAGGAATGGCCTCCACCTGACCAAAGAGACACAGGATGAAGTCAAAAGGATTAAGAAGAAGCTTAGCAACCTGTGCATTGACTTCAACAAACACCTGAACGAGGACACCACCAGTCTGGTTTTCACCAGAGAGGAGCTGGGCGGTCTCCCCGAGGACTTCCTGAGCTCGCTGGAGAAGGACGGGGACAAGCTGAAGATCACCCTCAAGTACCCTCACTACTTCCCCACCATGAAGAAGTGCTTCATCCCTGAGACCCGTAGGAAGCTGGAGGAGGCCTTCAACTCTCGCTGCAAAGAGGAAAACTCTGCCATCCTGAAAGAGCTGGTGCAGCTGAGGGCTCAGAAGAGCTCCCTGCTGGGCTTCACCACCCACACTGACTTTGTCCTGGAGATGAACATGGCCAAGTCTGGCAAGAAGGTGGCTGGCTTCCTAGAGGAGCTGGCCCGTAAGCTGAAGCCCCTGGGGGAGGAGGAGCGCAAGGTCATCCTCGCGCTGAAGGAGAAGGAGTGCCAGAAGAGGAGCCTGCCTTTCAATGGCGAGCTGCAAGCCTGGGACACGCGCTACTTCATGACCCAGGTGGAGGAGACCCAGTACGCGGTGGACCAGAACCAGCTGAAAGAGTACTTCCCGATGGAGGTGGTGACCCGGGGCCTGTTGGACATCTACCAGGAGCTGCTCAACCTCACCTTTGATCTGGTGGAGGGCGCCCCAGTTTGGCACGACGACGTCACCCTCTACTGCGTCAAGGACCGCACCTCGGGCACGGTGGTGGGCCAGTTCTACCTGGACCTCTTCCCAAGagagggGAAGTACGGCCACGCTGCCTGCTTCGGCCTGCAGCCCGGCTGTCTGCTGTCGGACGGGACCCGCCAAATGGCGGTGGCAGCCATGGTGGCCAACTTCAGCAAGCCCACGGCCGATGCCCCGTCCCTGCTGCAGCATGACGAGGTGGAGACCTACTTCCACGAGTTTGGCCATGTCATGCACCAGCTCTGcgctcagGCGGACTTTGCCATGTTCAGCGGGACTCACGTGGAGCGGGACTTTGTGGAGGCGCCCTCCCAGATGCTGGAGAACTGGGTGTGGGAGAAAGAGCCCCTGCAGCGCATGTCCAAACACTACAAGACGGGCGCCCCTATCCCCGACGACCTGCTGGATAAACTCATGAAGTCCCGGCTGGCCAACACGGGTCTGTTTAACCTGCGTCAGATTGTCCTGGCCAAGGTGGACCAGGCACTCCACACCAAGAATGGCCTGGACCCAGCTGAGGAGTATGCTCGGCTGTGCCAGGAGATCTTGGGTGTGCCCGCATCCTCAGGAACCAACATGCCTGCCACGTTTGGCCACCTGGCAGGTGGTTATGACGCCCAGTACTACGGTTACCTCTGGAGCGAGGTCTACTCCATGGACATGTTCTACGCCCGCTTCAAGCAGGAGGGCATCATGAACCCAAAGGTGGGGCTTGACTACAGAAACTTTATCCTGAAGCCCGGAGGCTCTGAGGATGCTGAACTGATGCTGAAGAACTTCCTAGGGCGGGAGCCAAAGCAGGAAGCTTTCCTTCTGAGCAAAGGACTAACGGTTGAGCTGGAGGCGGACACTCCATGTgcctgttgaccaatcacagccAGCTCAGTGTAAACATCCCCAACCAATCATACACTTAGGACACAGGCACAAGGGACCtacattttcaacaacaaaaaacccaGACGAAGACAAGAATTGATAAAGAGAAGAATTTCCCGTTTCTGCTGCTCTACAGCCGtgttccccaaccctggtcctccagtaccccaacagtacacagttTTATTAAGCACACCTcgttcaacttgtcaactaatcatcaaggcctcaatgagttgaatcagatgtgcttgtccagggttacatTAAAAATGTGTACTGACCAGGGTTGGGAAAGATTGCTCTGCATGCAACATCACCCAGTTTCCCCCCTTTTGTGCTGTGTTTTGAGTTTGGAAGTATATTTTAAACTGCAATTGTATTCAAGTAAGGAAGAGCAAAATACACTAAGAATTGACTTGA

Function

NR:

description
thimet oligopeptidase-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01392 THOP1; thimet oligopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562998.2 True 2612 mRNA 0.55 14 15595313 15606479

Neighbor

gene id symbol gene type direction distance location
LOC118944451 NA coding upstream 39843 15552115 ~ 15555470 (+)
LOC110489630 LOC106573979 coding upstream 73524 15508762 ~ 15521789 (+)
sass6 sass6 coding upstream 127302 15447458 ~ 15468011 (+)
lrrc39 lrrc39 coding upstream 158288 15433089 ~ 15437025 (+)
LOC110489303 dbt coding upstream 162549 15425122 ~ 15432764 (+)
LOC110490377 LOC106573932 coding downstream 16039 15622518 ~ 15636224 (+)
LOC110490510 LOC106573976 coding downstream 88331 15694810 ~ 15716774 (+)
LOC110490675 LOC106573928 coding downstream 304654 15911133 ~ 15919924 (+)
cart1 LOC106573929 coding downstream 314022 15920501 ~ 15922085 (+)
LOC110490588 LOC106573927 coding downstream 316024 15922503 ~ 15975856 (+)
G14365 NA non-coding upstream 63952 15531001 ~ 15531361 (+)
G14359 NA non-coding upstream 66670 15528330 ~ 15528643 (+)
G13956 NA non-coding upstream 173508 15421591 ~ 15421805 (+)
G13907 NA non-coding upstream 252693 15342280 ~ 15342620 (+)
G14415 NA non-coding downstream 4594 15611073 ~ 15611634 (+)
G14417 NA non-coding downstream 8826 15615305 ~ 15615517 (+)
G14418 NA non-coding downstream 9092 15615571 ~ 15615837 (+)
G14427 NA non-coding downstream 31101 15637580 ~ 15638046 (+)
G14858 NA non-coding downstream 436903 16043382 ~ 16044075 (+)
G13639 NA other upstream 633310 14961554 ~ 14962003 (+)
G13434 NA other upstream 782689 14811771 ~ 14812624 (+)
G13391 NA other upstream 894583 14700176 ~ 14700730 (+)
G13381 NA other upstream 915286 14679698 ~ 14680027 (+)
LOC118941201 NA other downstream 972607 16578956 ~ 16592967 (+)
LOC110492606 LOC106573909 other downstream 1310020 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 1356578 16962997 ~ 16967790 (+)
LOC110495874 LOC106573877 other downstream 2047728 17654164 ~ 17673094 (+)

Expression


Co-expression Network