XLOC_001969 (rassf6)


Basic Information

Item Value
gene id XLOC_001969
gene name rassf6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 13209580 ~ 13236012 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003849
GACATTGCTAGGCTTTCCCAGAAGTCACTCAGCAGAGGTGAGTTGGCTCAGGTTACGACAAacattgtcacaatcaccagaaAAACACCTGACAAGAACTACAACTCTTCATTCTGTGCCGAACTTCTCTTATCTGCCCGACCCTTCTATAACCGCAGCTGAAGATAGAGATATGTGACCCCTTCCTCTTAAAGTCCACTGACATTGGATCTAAGCAGACAGCAGATCGGGTCGGCTTGTTGAAATGAATGCAGTCCAGTCAAACTCTGTTGTTCAAGTTGGTGCTGGAAATGTTTGCTCCAGGGCTGAGTTTTTCTCTTTACTGAACACCTACAACTGCTTTCTTAAAGACAATACACACCTGCAGCTCACTGTTCATGAgTATGCAGGAAATGTGACATTGGAAGGCATCCTGGTCATTTACTGGGGTGTAAAGAGACCCATTCGGTTACAAATACAAGATGAGAAACAGACATGTTCTAATGAGTCTTCAGTCAAATCACCAGACCCCATCAGTCCACTAGGAAACAAAAGGGGTATGACACGATGGGGAGAATTTGACAACCTTCACAATATTGCTGAACTGGAGGAAGCTGGATCACCTGAAAATCCTACTGAAGACTACATCGTATACGAGACCATGACTTTAAGGCCATCGCGGACCATGCAAATCAATGAAGATAGTTCATATCTGATTCGCACCATGAGCGACGCCTCGCTGGTGAAAATGAGGGTGAAAAGTAAGAAGATGATTGAAAGTCAAAAGAACAGAAACCATCGCTTCTCCATCAATGGACACTTCTACAACTATAAGACATCTGTTTTCACACCATCATTTGGAGCAACCACAAATGTGCACATTAACAGCAGGATGACGACACAAGAGGTCATTACACAACTGCTACACAAATTTAAAGTAGAAAACAGTCCAAATGAATTTTCCCTCTACTGCATTCATCAAACTGGAGAGAAGAGAAGGTTGAGCAGTTCAGACCTGCCCTTGTGGGAGCGTGTTCTACAAGGACCATCAAACTTCATTATGAAGATGTTCCTCATGGATACAGACGAAGAGGAAATTAGTCTTGATGTAGCTCAGTACCTCAATTTAGAAATGCCCATTTTGAAGGTTATCCTGCAGAAACTGGAAGAGCAAGAGAATCTGGAGATACAAAGGATAAAAGCAAAATACCAGAAGGAAAGGAGTCTCTTGTTGCAGTGCTTGAGGAAAAAAATGCCAGTTAAAACCGAGACGACTGTATAAAGAAGTCTTGGCAGTGGGAAACAGTTTTCCATGTGAGATCAACCACGAATgagaaacagtaaaaaaaaaaaaaaaagaaaagtgcatGCAGGACATAGCTTTACACTATTatgtttgtggtgtgagtgtaaataatgtaaaatagatTTTGCATAATGGAACTGTAATTAAACTATTTATCTTGTGAGAGACCAAATAAAATGCTGGTATTTGAG
>TCONS_00003850
ATTCTGTGCCGAACTTCTCTTATCTGCCCGACCCTTCTATAACCGCAGCTGAAGATAGAGATATGTGACCCCTTCCTCTTAAAGTCCACTGACATTGGATCTAAGCAGACAGCAGctgaccgcttacctctgtgtggacggcttttatgctgttactagtttgtccaatAGCTCAACCGCAGAATGGAGTTGACCGCGACAACGGGGTCCAAGTCCAGCGAAGCAtcgttccagaaagcggATCGGGTCGGCTTGTTGAAATGAATGCAGTCCAGTCAAACTCTGTTGTTCAAGTTGGTGCTGGAAATGTTTGCTCCAGGGCTGAGTTTTTCTCTTTACTGAACACCTACAACTGCTTTCTTAAAGACAATACACACCTGCAGCTCACTGTTCATGAgTATGCAGGAAATGTGACATTGGAAGGCATCCTGGTCATTTACTGGGGTGTAAAGAGACCCATTCGGTTACAAATACAAGATGAGAAACAGACATGTTCTAATGAGTCTTCAGTCAAATCACCAGACCCCATCAGTCCACTAGGAAACAAAAGGGGTATGACACGATGGGGAGAATTTGACAACCTTCACAATATTGCTGAACTGGAGGAAGCTGGATCACCTGAAAATCCTACTGAAGACTACATCGTATACGAGACCATGACTTTAAGGCCATCGCGGACCATGCAAATCAATGAAGATAGTTCATATCTGATTCGCACCATGAGCGACGCCTCGCTGGTGAAAATGAGGGTGAAAAGTAAGAAGATGATTGAAAGTCAAAAGAACAGAAACCATCGCTTCTCCATCAATGGACACTTCTACAACTAT

Function

symbol description
rassf6 Predicted to be involved in signal transduction. Predicted to act upstream of or within regulation of apoptotic process. Orthologous to human RASSF6 (Ras association domain family member 6).

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0007165 signal transduction biological_process
GO:0005575 cellular_component cellular_component

KEGG:

id description
ko04390 Hippo signaling pathway
ko04392 Hippo signaling pathway - multiple species

ZFIN:

id description
ZDB-GENE-030616-513 Predicted to be involved in signal transduction. Predicted to act upstream of or within regulation of apoptotic process. Orthologous to human RASSF6 (Ras association domain family member 6).

Ensembl:

ensembl_id ENSDARG00000000804

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003849 False 1476 mRNA 0.41 11 13209580 13236012
TCONS_00003850 True 827 mRNA 0.45 7 13209690 13222865

Neighbor

gene id symbol gene type direction distance location
XLOC_001968 lpar1 coding upstream 145470 13000370 ~ 13064110 (+)
XLOC_001967 CT990561.1 coding upstream 479129 12517059 ~ 12730451 (+)
XLOC_001966 CR388225.1 coding upstream 876211 12333253 ~ 12333369 (+)
XLOC_001965 NA coding upstream 1280448 11928089 ~ 11929132 (+)
XLOC_001964 NA coding upstream 1281594 11926073 ~ 11927986 (+)
XLOC_001970 tmem267 coding downstream 43067 13279079 ~ 13287169 (+)
XLOC_001971 NA coding downstream 62712 13298724 ~ 13304277 (+)
XLOC_001972 BX957308.1 coding downstream 620780 13856792 ~ 13894856 (+)
XLOC_001973 BX000705.2 coding downstream 694836 13930848 ~ 13931718 (+)
XLOC_001974 si:dkey-286h21.1 coding downstream 974655 14210667 ~ 14212801 (+)
XLOC_001963 CR925713.2 non-coding upstream 1435061 11774405 ~ 11774519 (+)
XLOC_001961 NA non-coding upstream 1543617 11652594 ~ 11665963 (+)
XLOC_001980 NA non-coding downstream 1800259 15036271 ~ 15042748 (+)
XLOC_001981 NA non-coding downstream 1810994 15047006 ~ 15048782 (+)

Expression


Co-expression Network