zgc:113223 (LOC106573933)


Basic Information

Item Value
gene id zgc:113223
gene name LOC106573933
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15616446 ~ 15621641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563533.2
CATCTTGAGAGTATAAgcaggagaggggaaaggggaagACAACTCTTTTCTGTAGTCTGGCGATTTCAAACTACCACACCCGACTTCTCAAGAACTCACATAATACACAAGGAGAATGGTGAAAggaattcaaaaatatataaCCATTAAATACACTTTATTCGTCTGCTGTTACATTTTTTGGGTAGCAAGTGCTGTTCTTATAGCAGTAGGAATCTACGCCAAAGTTTCCAAAGAGAAAGatGTTGTGGACACTTTGATGACTGACCCAGCTCTCTTGCTGATCGTCATTGGCTCCCTAATGTTTATGATCACCTTTTTTGGGTGCTTCGGTGCATTGCGCAATGGAACCTGCCTACTGAAGACATTTTCAGGGATATTGGTGGTAATCCTTCTCCTACAGATTACAGCTGCGGTGCTTGGATTCCTGTTCACTGACAAGGTTTTGGAGAGGACGGAGAAGTTAATGAGAAAGGCCATTGTTAGCTATCGGGAGGATTTGGACTTGGAAAATGTTATTGACTTTGTTCAAAAAAAGTTCCAGTGCTGTGGTGTTCACACCTATGAGGACTGGTCCGATAACGTCTACTTCCACTGCTCTGCGGAAAACCCCAGTCTGGAAGCCTGTGGAGTGCCTTTCTCTTGCTGCCTACGACTGCACAATGAGACAGTTTTCAACACCATGTGTGGCTATGAGGTGCAGAGTATGGAGCCCAGTTCAGCAGGGAGGAGTGTGTACACCAACGGATGCCTGGATAAGGTTCTGTGGTGGGGGAAGCAGAACCTCTTCCTAGTGGGGGGGATTACTGTGGGTCTGCTTTTCCTAGAGctGTGTATGATTACTTTGGCATCTTGCCAGGTGTCTCGTATAAAGACGGTTCAACAGAGGACAAAACAAGATGGTGGAAAATATCCTTCCTTGACTAGAGACAGACTAGACAGCAATGTTTGGTACCCTGCTTCCTGGGACTTCAATCAGGAATGAAAGGGCCCTCTTGGTCCATTAGAGTTGTACATGAGCAACAGCTTTGAACAGAAGTCGTGTGTACGCACTGTGAATCTATGTACTTTCATGTCAAAAGGTTGTTCAAGAAAGCACTGTGTGGTCCACTGTGCACAGATGTGACCTTGATGTTTGTATGTTATTAAAACTGTTATTCTGATCATC

Function

NR:

description
tetraspanin-33-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563533.2 True 1168 mRNA 0.45 8 15616446 15621641

Neighbor

gene id symbol gene type direction distance location
LOC110490009 LOC106573934 coding downstream 21141 15588932 ~ 15595305 (-)
LOC110490068 LOC106573935 coding downstream 29066 15582052 ~ 15587380 (-)
LOC110489874 LOC106573978 coding downstream 36336 15557864 ~ 15580110 (-)
LOC110489707 LOC106573936 coding downstream 64953 15531412 ~ 15551493 (-)
LOC110489545 mfsd14a coding downstream 124574 15474988 ~ 15491872 (-)
LOC110490301 LOC106573931 coding upstream 17330 15638971 ~ 15682862 (-)
ga45b LOC106573930 coding upstream 283543 15905184 ~ 15907139 (-)
LOC110530936 LOC106573926 coding upstream 354735 15976376 ~ 15990475 (-)
LOC110490953 LOC106613612 coding upstream 373795 15995436 ~ 16075800 (-)
LOC110531327 LOC106573923 coding upstream 493151 16114792 ~ 16136293 (-)
G14532 NA non-coding downstream 4316 15611906 ~ 15612130 (-)
G14515 NA non-coding downstream 60486 15555713 ~ 15555960 (-)
G14362 NA non-coding downstream 87202 15528977 ~ 15529244 (-)
G14360 NA non-coding downstream 89051 15527119 ~ 15527395 (-)
G14289 NA non-coding downstream 117805 15445797 ~ 15498641 (-)
G14504 NA non-coding upstream 1240 15622881 ~ 15636124 (-)
G14534 NA non-coding upstream 6483 15628124 ~ 15698059 (-)
G14610 NA non-coding upstream 138835 15760476 ~ 15760683 (-)
G14622 NA non-coding upstream 148949 15770590 ~ 15770852 (-)
G14636 NA non-coding upstream 156950 15778591 ~ 15778802 (-)
LOC110488740 cdc14a other downstream 275565 15325555 ~ 15394233 (-)
LOC110488330 LOC106613586 other downstream 432904 15175297 ~ 15183693 (-)
G14120 antithrombin other downstream 442416 15114926 ~ 15174030 (-)
LOC110487385 LOC106574065 other downstream 657178 14955950 ~ 14959313 (-)
G13196 LOC106574055 other downstream 1248113 14366290 ~ 14368501 (-)
LOC110531395 LOC106613616 other upstream 567363 16181514 ~ 16295527 (-)
G15470 NA other upstream 909406 16531047 ~ 16531476 (-)
LOC110492105 homer3 other upstream 1239008 16838135 ~ 16871992 (-)
G16100 LOC106573897 other upstream 1509779 17131420 ~ 17136357 (-)
G16161 LOC106573901 other upstream 1633595 17255236 ~ 17257241 (-)

Expression


Co-expression Network