LOC110490510 (LOC106573976)


Basic Information

Item Value
gene id LOC110490510
gene name LOC106573976
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15694810 ~ 15716774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563971.2
GTATTGAAAAGAATAAAGACAAAGACAGAGTGGAATGAGAGACAGATCTCAGACGCTGAGCTGAAAGATGGAGTTTACATCTTCAGAAAAGCAGGAAACAGTGTCAAGAGCGCAAGATTGCTGTAATTGATCTGCCCATTCGCTTGCGTCAGTATTCGATGAGAGACGAAATAGAAAGTAAAGCACCTCCTATCTTTGCCATCAGGGGGTTTAAatcagaaagagcgagagagagatgcagtaaaAAGAGGAGGACCTGGCTAAACAGCACATCACGCAAATGGTAAAATGCTATTAACCCACTATACAAGGACTCTAGCGTCAATGTCTTTTTTTACAAGTGTTACATGCGGGCATATGTAAATCCGCAAAATCACAACGGATCTGGGGAAGTTAGCTTAAGGTCTTAGGAAACAGGTCTTAGGAAAACTGAGGTCTTAGCTAAACCTTAGATTTTAGGAAACAGGTCTTAGGAAACCCCCCCAAGAGCCCAGCATGCCGGAGCAGAGCAACGACTACCGTGTGGTGGTGTTTGGGGCCGGTGGCGTGGGCAAGAGCTCCCTGGTCCTCCGCTTCGTCAAGGGCACCTTCCGGGACACCTACATCCCCACTGTGGAGGACACCTACCGTCAGGTGATCAGCTGTGACAAGAGCGTGTGCACCCTCCAGATCACCGACACAACGGGCAGCCACCAGTTTCCCGCCATGCAGCGCTTGTCCATATCCAAGGGCCACGCCTTCATCCTGGTCTACTCTGTCACCAGCCGCCAGTCCCTAGAGGAGCTCAAGCCCATCTACCAGCAGGTGCTTGCCATCAAGGGCAGCGTGGACGCCATCCCTGTCATGCTGGTAGGCAACAAGAGTGACGAAACCCAGCGTGAGGTGGAGACCACGGAGGGTGAGGCGCAGGCTACAGCATGGAAGTGTGCCTTCATGGAAACCTCTGCCAAGATGAACTACAACGTCAAAGAGCTCTTCCAGGAGCTGCTCACcctggagaagaagaggaacaTGTGTCTGAGCATCGATGGCAAGCGCTCCGGCAAGCAGAAGCGTGCCGACAAGCTCAAGGGCAAGTGCAGCATCATGTAGGGAGGGAGAGTTGATGCCTGACCCTTAGAAGGAAAGACTGGGGTTGgggaaggtggtggtggtggtgcaaaGTGTAGATGTTCTTGAAGAGAGTCACTTCGAGGAATGGAGGGAAGGTAGGGGTGGGACGGGGCTCGTCTGAGAGGGGTTATTTTATCCCAACAGAGGTGACCCCCCCACAAAGAGGCTATTCAAGTTCAAAGAGAAGAGAAGTTCAAGCCTTGATGCAATTCTACTTTGATGAGAAAAATGAAAGAATATGGAGCCCTGACAATTGATATCCTCTCAAGTTCAGGGCATTATTACAAACTCAGaacccatttcaatattattcaCCCCACGTTTGCCCTTTTCTCCTATAGCTGTCTCTCTCCTGCTAATATGAGACACCCTGCAAACAATAATGAGTTGTTAAGACGTCCCCAGGACATCACAAAATGGTCGCCTAAAGTCGTCAGGATGTTGTGTCAAtgtcccctggaggttttgtcttgttcccggTTTGTTCCGAGGATGTTTTTAGGGTGTTCTTGGGACGTTGTGCCATAGTTCCATGGAGACTTTGCACTTCAAATTAAATCTCAGCACTGTGAAacatacactacagttcaaaggtttagggtcacatagaaatgtccatAGAAATAAAAGCACAttcttt
>TU17062
agagatgcagtaaaAAGAGGAGGACCTGGCTAAACAGCACATCACGCAAATGGTAAAATGCTATTAACCCACTATACAAGGACTCTAGCGTCAATGTCTTTTTTTACAAGTGTTACATGCGGGCATATGTAAATCCGCAAAATCACAACGGATCTGGGGAAGTTAGCTTAAGGTCTTAGGAAACAGGTCTTAGGAAAACTGAGGTCTTAGCTAAACCTTAGATTTTAGGAAACAGGTCTTAGGAAACCCCCCCAAGAGCCCAGCATGCCGGAGCAGAGCAACGACTACCGTGTGGTGGTGTTTGGGGCCGGTGGCGTGGGCAAGAGCTCCCTGGTCCTCCGCTTCGTCAAGGGCACCTTCCGGGACACCTACATCCCCACTGTGGAGGACACCTACCGTCAGGTGATCAGCTGTGACAAGAGCGTGTGCA

Function

NR:

description
GTP-binding protein Di-Ras1-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563971.2 False 1753 mRNA 0.49 2 15694810 15716774
TU17062 True 430 TUCP 0.50 2 15695041 15715682

Neighbor

gene id symbol gene type direction distance location
LOC110490377 LOC106573932 coding upstream 58586 15622518 ~ 15636224 (+)
LOC110489937 mepd coding upstream 88331 15595313 ~ 15606479 (+)
LOC118966758 NA coding upstream 95595 15599090 ~ 15599215 (+)
LOC118944451 NA coding upstream 139340 15552115 ~ 15555470 (+)
LOC110489630 LOC106573979 coding upstream 173021 15508762 ~ 15521789 (+)
LOC110490675 LOC106573928 coding downstream 194359 15911133 ~ 15919924 (+)
cart1 LOC106573929 coding downstream 203727 15920501 ~ 15922085 (+)
LOC110490588 LOC106573927 coding downstream 205729 15922503 ~ 15975856 (+)
LOC110491417 LOC106573922 coding downstream 441158 16157932 ~ 16180982 (+)
LOC110491555 LOC106573918 coding downstream 763206 16479980 ~ 16488940 (+)
G14427 NA non-coding upstream 56764 15637580 ~ 15638046 (+)
G14418 NA non-coding upstream 78973 15615571 ~ 15615837 (+)
G14417 NA non-coding upstream 79293 15615305 ~ 15615517 (+)
G14415 NA non-coding upstream 83176 15611073 ~ 15611634 (+)
G14365 NA non-coding upstream 163449 15531001 ~ 15531361 (+)
G14858 NA non-coding downstream 326608 16043382 ~ 16044075 (+)
G14888 NA non-coding downstream 371195 16087969 ~ 16097568 (+)
G14897 NA non-coding downstream 398039 16114813 ~ 16124751 (+)
G14932 NA non-coding downstream 468443 16185217 ~ 16185549 (+)
G15008 NA non-coding downstream 592093 16308867 ~ 16326251 (+)
sass6 sass6 other upstream 226822 15447458 ~ 15468011 (+)
G13639 NA other upstream 732807 14961554 ~ 14962003 (+)
G13434 NA other upstream 882186 14811771 ~ 14812624 (+)
G13391 NA other upstream 994080 14700176 ~ 14700730 (+)
G13381 NA other upstream 1014783 14679698 ~ 14680027 (+)
LOC118941201 NA other downstream 862312 16578956 ~ 16592967 (+)
LOC110492606 LOC106573909 other downstream 1199725 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 1246283 16962997 ~ 16967790 (+)
LOC110495874 LOC106573877 other downstream 1937433 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 2259190 17975918 ~ 17991176 (+)

Expression


Co-expression Network