LOC110490588 (LOC106573927)


Basic Information

Item Value
gene id LOC110490588
gene name LOC106573927
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15922503 ~ 15975856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564067.2
GTATGGCATTATTTGCCAAACTTTTCAACATGGCGACACAACAAACTGAAGAGGTGGAAGCAATGGAAAATGTGAACCGAACTTTGCATCCTGGCTTCAGCAACGACAAGTATTCTCTGCTTGTCATTGTCGGTGAACATAGTCGGACTGGACTTGTGGACTACGTGGttgcagagatagagagagGCATCCGCTCATGGGGCGTGGACCTGACAGCCTGTAACCTGGATGAGCAGCTCAAGCTATTTGTGTCGCGACACTCTGCCTTCTTCTCAGAGGAAATAAAAGGTCAGAGGACACTGCAGCATGGTGGAGATGTTCTGGATACCCAGGTGATGGTGAACCCATCCCATGAGTTGGTCTGCTCAGAGGTGCGCCGGCTTATATCTGATGTGTCTCGCCACAAGTTGTTGGTTCTTGCTGGACAATGTGTTGAAGAGGCAGGAGATCTTGTCTTACAAACAGGATGTTTCTCTCTGAGTGACTTCATTCACATATTTGCTGATGAGGAGATTGGAGAGTTGTTGAGCTCTGCAGATCCCACACAAAAAGCTAACCTCACGCTGAGTTGTCCCAACTCTGGGGTGTGGAAGAACTCTGTGTTGGAGAAACACAACCTACAAGACTTCATCAACATCAAAACAAACCCACCATCAGTGCTACCGGAAATGGAAGGTCTGCAAGAGTTCACAGAATACCTCTCAGAGTCCCTGGAGCCACAGTCTCCGTTTGAGCTGCTAGAGCCCCCCAGTACTGTGGGCTTCCTCAAACTCTCCCGCCCCTGCTGCTATGTATTTCCAGGTGGGAGAGGAGACTCTGCCTTCTTTGCTGTTAACGGTTTCAACGTTCTGGTCAATGGTGGGTCAGATCCTCGCTCCTGTTTCTGGAAACTGGTTAGACATTTGGACAGAGTTGACTCCCTGCTCCTCACCCACATTGGGGCTGACAATCTGCCAGGGGTGAACAGTCTTCTCCAAAGGAAAGCAGTAGAACTGGAGGAGGAACATTCTACTGACTCTCAGATCAATGAGGACTGGATGAAAAATCTAATTTCCCCTGAGATTGGGGTCGTTTTCCTTAATGCTCCAGAGAGATTGAAGTCATTCCGGAGTGATCCCAAAGAACTGCGGAGCTGCGACCAAGTGGCACTCACTTTGCAACACCTTGAAAGGCTAACAATCAATCCAGAACCTCTTAGTCGCTCAAATGGACCCAGCATTGATCCTCTTATTCTTTTCCAGAAGATGGGAGTCGGTAGACTAGAGCTGTACATTCTTAACCCAGTCAAAGGCAGTAAAGAGCTTGAGGCTTTCATGAAGACCTGGCCCGGCAATGGATCTAACATAAAAGGCTCAGAGATGCCCCTGTCTTGCCTTGTCTCCATCTGTGCTCTACTGGTGTGGCATCCTGCCAGTCCTCAAGAGAAAATCATTCGAGTTCTCTTCCCTGGGTGTAGTCCGCAGGCCAAGATTCTTGAAGGACTTGAGAAAGTAAAGCATCTAGAATTCCTGAAACATCCAGCCGTGAGCCTCAGGGACCTTGAAACATCCAAATCAGATAAACAACCAAAACGTGCAGAGAGTCGGGAGAGCCTTAAGTCCCTGCCCAAGGATTCAAGACCTAGCAGTGCCTTGCTGAAGGACAAAGTTGGACGTGGGGATGTTAAAAAGCAAGACATGAAGTCCAAACCCAAGGCTCCAAGTGACATTGCTAATAAAGAATGGAAGGAAGGGGAAGATAAGTCCAAATTGAAGGATGGGGATGCTAAACAAAGGCCTCCAAAGGCTGAAAAGCTTATGCAAAAGAAAGAACCTTTAAAGGATGAGAAAAAAGAAGTAAAAAAGGATGAGAAAGCCTCCACAGGTGTTGTCAAAAAGGAAGAGAATTTGGAGAAAAAGAAAGAACCAGTTAAGAAAGAAACTCTTGGTCCAAGACCAAAGAAAGACATCAAACATGATCAAAAGAAAGATTTCAAGAAGGAGGTAAAGCCAGAGGAGAAGAAACCAACAAAACCTCTCAACAAGGATGTCAAAAAAGTGACAACTGGACCTTCATTAGGAAACGCAGAGGCAAAAAAGCCCTTAGTCAAGAATGGAACATTGAAGAAGGATGCAATCCCCAAGAAAGACTCATTGAACAAGGCGGCAAAGCTAAAGACTGATAAAAAGGAGCCGGAGAATCATAAAGCTTCTGCCTCTGAGGGGGATGCTGATCGTTCCAAAATGTCAACGCCTGAAGACATGACAGCGGAATTCGAGAACCTCAGAGCAGAAAATGCAAAGTCAGAGGAAAGGACTGCTGTTGTAGTGAACACTATAGCGGACATTGAAGGAATAGAGCAACCTGCGACAGAGAATGGATCAAGAGCAAATGCAGAGAGGGGGGACATCTTGGAAAGTCCACAAAAGTTCACCTGCATGGAGACACTGCCAAATCCAGAGAAAGCCCTGGGAACCACTTCGCCTCTTGACAAAACTCTGAAAAGTGACCACAGCGTGAACTTAGATTTCACACCAACTGAATACAGGCTACTTGATGGGGCCCTGAGAAATGGGCAAGAAGATGTTTGCGCTAGCTCAGATGAGAAGACTTTAGAGTTGGTCTCCCCTGCCGACTCAGCCCCTAATAGCGCTGGGCATACCCCTTTCCACCAATCACCTGAAGAGGATGATCAGGGCTCTGGTGAGGACAGTAGTCTCGGGGGAAGGGTGCCTAGCATTGGGTTTGAAGACTGCCACATCATGGGTTCTTGCAGGAACTCCGAGGTAGGCTCCTTGAGGGGGAACCTAGGAAACTCCATGTCGTCCCAGGACAAACAATCAAGTATTTTGACACTGAGTCCCTTCATGCTGCCTGACACTGTCTCACCCAATATTACCTCCATGCCTGCTGAAATCGGTTCCCCACACTCGACAGAAGTTGACGAGTCTCTTTCTGTGTCTTTTGAACAGGTGCTCCCATCTATTGATGAGTCACCCAAGGGAGACCATATGGACAGGTCCTACTCAAATGGGCATTTTGCAGATTCTGACTCCAAAATGGGGATGCCCTTACCCTTGAGTACATCTCATAACACGCGTCCTCCAGGGGATGGCTCAGAGGAACGCCTTCCTGGACTACATGGTCTTCTCCCTGACATTCCCCATGATGTCGACCTCTGCCTCGTCTCACCCTGTGAATTCAAGCACTCAAAGTCCCCAGAGAACCAACAGCAGCATCGGTCTCTAGGGCTAGCCACGGGTAGCCCGCAAGAACTCTCTGAAGACAGCAACCACTCCCAGGAGCTAGCTAAGCCACAAAGCGGAATTAATAGTGATCGACATTCACCTCAAGGCCAGGAGACCCCTCCCACGTCTGCTAGTGAATCCCTCAACACAGCCACAGATTCAGACATACCTCCAGGGACTGAGGACTGCCCTTCCATCACTGCAGACATGGACTCAGACGAGGACTCTGGGAGTTTCCCGCCACACCATCCACATGACCATCCCAGCTCTTACTCCTCTAACAGGGGAGCACAATATTCCTCTCAGGACCCTCCCCCAGCCCCAATGAAGGATCTGCCCCCCTTGCCGCCCCAGCCCGGTACCTGCATGACTGACCCTGAGGCTGATGCACCAAGCAAGACCTCAAAGAGTGCCGCCATAAAAACCAAGAAACCAGCCGGGGTCACACAGAGGTCAACGTCAGCCACCAGTACAGCTCTGAACAGCAAGACCAAGGCTGGCAGCACAACTGGTACATTGAAGACCACCTCAAGCCTTGACACAAGGCCTTCATCCCGCAATACCACTAGTGGCTCCAGACCTGGAACTTCAAAGTCAGTTTCTTCAGGTTCTCTGGGCAGTAAGGTCAGTGCAGCTGGAAGTGCACCAGTTTATTTGGACATGGCTTATCTCCCCTCTGGTTGTGCCTCTGCCACCATTGACGTGGACTTCTTCCGACGCCTGCGCTCCTCCTGCTACATCGTCAGTGGCGACGAGCCCCTGAAGGAGTCAGTCATGAGACCCATTCTCGACGCTCTACTGGAGGGAAAGACTGCCTGGCCCGATGTGCAGGTGACCCTGATCCCCACCTTTGACTCGCTGACGATGCACGAGTGGTACCAGGAAACccatgagaggcagagagagctggGTATTACCGTGTTGGGCAGCAACAGCACTGTGGCCATGCAGGAGGAGACCTTCCCTGCCTGCAAAGTGGAGTTCTGAGAGGGGTGAAACGAGATGAAGCTACAAATCCCTGCCCTCTCACCCACTCTTAAATTGGGATGGACTAATTTCCCCCATCTACAACTGATTTCCCACCCCAGCATGCTTCAAGTATATCCTGGTGGATTAGCAGGCCTTACTCATCCTTTCAATCTTATCATTATACATAAGACCCCAGCAAACACTCTGACCCATCttttgtcttgggtatgtctatgCCATGGAAATGAAGGCAGAACATGAATATGTCCAAGTCTTTGGTCTACCAACATGAAGAAAGGTTGTTCATTATGAATGCTAGGTAAGGTGGAGCTTAAAGATTGTCTATAGTAATCGAAGGTCCTCACATTTCTTACCATTTAGCCAGGTAGTTGTGATCCAAATCCATGACGGCTCAAAGGAGACTAGTCGACAGCTGTAGGAAACCCTCTGCCTCAATGGGACTGAACTCATGAGTTCTTCCTTCAACGATTATTTCATCCGTAAAACATTTCATAGGTATATTTAGGCCTACACCCATTTGCACAGTTATCAATGTCCAAAGACAAGGGAACCACAGTGAGTGAAGGAGTGTTACAATATAATATGATGTTAAAAGGCAGAGGTTGTGTGTGAGGAGGTGAATATGGGACAGATGTCTCCTGGTGCACTGGTAAAACATGAGACCTTAGCACTTACTGAAGGACAACATGTTTCTGCATCCCATTTTAGTTTCATAGACTGTCTATGAACATTGAGGAGATGGACAATGTCTTTGCAGGTAATGATATGCATGTGAACAGAAGAATTACCCGAACATTGACAAAAGTGTCCaagtttcaaaaaaaaaaaaataatttgtagaACATTTATATCAGTCACTTTAACCCTTCATGTAGAGTAGATACTGTATGGGGATACAATTTTGACATTGTCTTTTTAAATGAAATAACTCTGTACATTCTAGGTAATGATTTGTACTAAAATGAAATACTAATACATATTGGTTGATGGAAGGCAATAAGAAATGCAGTATTTTATGTACAAACTCATGACTGAATTAGTTTTACTACTCAGTAGTAATTTCATTAGAAAGGACACTGAATTAAGTGTAAACGCTACAGTATCTTTCCACACTAATAAATCCGTTTTTTGTGAAACACGATGTCTACTGCCGGCAGGTCTAGCATTTCTGATTATGACAAAAGTCAAGAAGACCCTAACCCTCAATCTTGTTTGTATTCAATAAGATTTTTCATTGGTGCCCAGGATATCAACTGTATCCAAGCCCATATTTGAGTCCCTCTCCAAGACCAGATGTTCTTCTAATTGTAAATGTATGTCACATGTGCAATAGAGGGTAAGCTTCACTGAAGAGGGATACTTAGATATGCTAATAGGGAAGTCATGAGAAATACATTACATTTATCTCAGTGGTTTATTATTGTGCAGAAGTGAATAAATGCTAAAACAGATGTTTAACTAGAAAGAAAAATCTGTTATATCAGCAATCGTTTGTGTATTCAGTTAATAGCAGTAGAATGTACAGTAGACAGCTTTATCTGGGAATGTGGACACTTTTAACCTATATCAAAACAGATTGGGTCCAAATGCATGCCACCAAGGCTTGCACAACCATGCCCACAATATTACATGCACTCACTGGGTTATAATGCTCTTTATTGCGAAGGATATTTTCATTTTATACAAGAAGGATTATGAAAGGATTTTAACATTTATTATTACTCAAGTTTTTGTTGCATGCAGAGTTATACAAGCATGCAGATCTCAtgttttattttgttagtttgtaaGTTTGCTGTGAAATATCAGTTTAATGTAATCACATCTGGTATTAAAGCAAACTAATGCCATCGCTCATCCAGAGCATCACTGTACATTTGAAGACGTCTTCATGTGAAAGGGTGTGTGCAGCCAGCCACATTTAGGCAGATCATAGAATTCCAATTATTTCATACAGAAGAATGTAAAATCCTTTATCTTATCAATTCATTAACAATTATATTTGATTCATTTTTCCTAAATTATTGAGTTATCTTTTTATATATCAATAATGTGGCGTAGCTACTTTCATTTGCAAACCTTTGGTTAGCAACCGGCTGCTCACATGATATAAGCCAATGGCAGGACAGAGCAAGCAGAACCGATCTCATTGTTTGTTCTGAAAGAACAGCATGTTTTTTGGTACTAGCCATAATAAGTCTGAGCAAAAATGATTGAAAATAGATTGCATTTCATTGGTCACTTATTTGGATAGATATTTCACACTAATGGAGTTAAGAATTATCTCATCGTTAACTCAACTTTGACTATAACAAATCAGTCCCATGTCCATGTAAAGATATGTCCATTTAACATGCGCCATTTGTCACAGCTTTTGGACTCTGAATGCATTGGTTTGGATATTGTGTGGCTCTTACGCCCTCTGCTGTCCATAACATTTCTTGGCTAGCTGTTCTGAAAGCTGTATTCATCGATAATTACAGGTCTCTTGTGGCCAAAAGGATTGCATGGGCAGGGCCATTGAGGGATTctaccattttaatgtagtcaactggaTGGGatttccaacttcattggctCCTGGTGACCCTGTTGAAGTCATGTCCAATTGGGTCATCAGGAGGGAACTGCCAattttgaagaagaaaaaaattgtcagactctataatggcacagatacaaagatgagtacTCCATCTCTGTAGATGTGTGTATTTTGAAAGCAATGTTCAGTGGTATATTTGGCTCATTGGAATAGTTCTAAACATTGGCCCTGTATTTCTGTGCCTCTGTTTCCATCCCTGCGCCATTATAATAAAAGTATTCGAATGAGATACCTCTGTCATAATACAAGTGACAGTAGCACATAACGAATGTTCCAATCTGTAAATCAGGCCCCAaaataaatatacacattttAAGTTCATATGCTCTTGCTCTTTGGACATTTTGAGAGTTACTACATTTCTTTAAtgctattgtttttttttgtgctaTATTTTTCATAGTTATATACACCTCTTTTCCCCTGCACTTATAAATGTATGTTTGTCTATGTCCATACCCTGTTGGTGGTTCACACATCACACTTGCAAGTTTCTGGACTTCACCCAGTAAATGCTATGAATGTTGGTCAAATTTTCCAAAGACTGCTGGTTTCCCCAGTGTCAAGTGGGTGGGGGAGTtagttggataatgacagtggaTAGATAATTCCGTATAGAAACACTAATTTTAGTTTTTTGCTTTTTCAATAAATATACCCCTTTTCTAAATCT

Function

NR:

description
microtubule-associated protein 1B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564067.2 True 7495 mRNA 0.44 7 15922503 15975856

Neighbor

gene id symbol gene type direction distance location
cart1 LOC106573929 coding upstream 418 15920501 ~ 15922085 (+)
LOC110490675 LOC106573928 coding upstream 2579 15911133 ~ 15919924 (+)
LOC110490510 LOC106573976 coding upstream 205729 15694810 ~ 15716774 (+)
LOC110490377 LOC106573932 coding upstream 286279 15622518 ~ 15636224 (+)
LOC110489937 mepd coding upstream 316024 15595313 ~ 15606479 (+)
LOC110491417 LOC106573922 coding downstream 182076 16157932 ~ 16180982 (+)
LOC110491555 LOC106573918 coding downstream 504124 16479980 ~ 16488940 (+)
LOC118941197 NA coding downstream 579636 16555492 ~ 16562184 (+)
LOC118941201 NA coding downstream 603100 16578956 ~ 16592967 (+)
LOC118941290 NA coding downstream 636744 16612600 ~ 16624198 (+)
G14427 NA non-coding upstream 284457 15637580 ~ 15638046 (+)
G14418 NA non-coding upstream 306666 15615571 ~ 15615837 (+)
G14417 NA non-coding upstream 306986 15615305 ~ 15615517 (+)
G14415 NA non-coding upstream 310869 15611073 ~ 15611634 (+)
G14365 NA non-coding upstream 391142 15531001 ~ 15531361 (+)
G14858 NA non-coding downstream 67526 16043382 ~ 16044075 (+)
G14888 NA non-coding downstream 112113 16087969 ~ 16097568 (+)
G14897 NA non-coding downstream 138957 16114813 ~ 16124751 (+)
G14932 NA non-coding downstream 209361 16185217 ~ 16185549 (+)
G15008 NA non-coding downstream 333011 16308867 ~ 16326251 (+)
sass6 sass6 other upstream 454515 15447458 ~ 15468011 (+)
G13639 NA other upstream 960500 14961554 ~ 14962003 (+)
G13434 NA other upstream 1109879 14811771 ~ 14812624 (+)
G13391 NA other upstream 1221773 14700176 ~ 14700730 (+)
LOC110492606 LOC106573909 other downstream 940643 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 987201 16962997 ~ 16967790 (+)
LOC110495874 LOC106573877 other downstream 1678351 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 2000108 17975918 ~ 17991176 (+)

Expression


Co-expression Network