LOC110491230 (med16)


Basic Information

Item Value
gene id LOC110491230
gene name med16
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16149712 ~ 16157809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564609.2
AACATGTTATAGGATGAATGGTAAAgagtaaatgtatttttttaacgtTAGAGATTTAAAATCTAAATAAGACATTTAGCTATATTATTAGAAGTTCGTTTGATGTAGTTGCTTCATGATTTGGTTCTAACGTACTACATTATCAtattgctagctaacgttagctctagCTAATGGAAGTAGCAGCTAATGCGTTTTAGCTAGCTGTATACATATAACTACGTTGACTAACACAGTAGCTAACCTAACTAACATAGGTGACAGTGTTAGCTCGAAGAAGACTGATGCAAGTAACGTAAATTTGACATCGAATTCTGTGTCTTGTTTGTGATATAGCTGCAAAGTGCAATCAAGTACATGAAGGTGACTGAACATTTCTCTGATTGGACAAGGACACTTGCACAAACAGTGGAAAAGCATATGGTTGAATGATGGAGGTTGCCTATGTTTGTGAGTGGGAGAAGAGACCCAAGAGCAACCACTATCCTTCCATCCCACTGGTGTGTGCCTGGTCCTGCAGGAACCTCGTTGCCTTTACCACAGACCTAAAAAATGAGGAAGACGAGAAAGAAGTCAGTCATATGGTCCACATCATTGACACAGAACACCCATGGGATGTGTACTCCATTAACTCTGGACATGGCGAGGTCATATCCTGTCTGGAGTGGGACCAATCAGGTTCCAGGTTGCTGTCTGCTGATGGAGATGGGCAGATCAAGTGCTGGGCGATGGCAGATCACCTGGTGAACAGCTGGGAGAGTTCACTAGGGAGTGCAGAGGACGGAGACCCCATCATAGCTCTGTCCTGGCTGCACAATGGAGTTAAGCTGGCTCTGCATGTGGAGATGTCGGGCTCCACCAATTTCGGTGAGAAATTTTCACGGGTCAAGTTCTCACCGTCACTCACGCTGTTTGGGGGAAAGCCCATGGAGGGCTGGCTGGCAGTGACAGTGAGCGGCCTGGTCACCGTGTCCCTGCTGAAGCCCAACGGTCAGCTGCTCACAGCCAGCGAGAGCCTGTGTCGCCTGAGGGGCCGCGTAGCCCTGGCCGACATCGCCTTCACCGGCGGGGGTAACATTGTGGTGGCGGCCACGGATGGCAGCAGCTCATCACCTGTGCAGTTCTACAAGGTGTGCGTGAGCGTGGTCAACGAGAAGTGTCGCATCGACACTGAGCTGCTGCCCTCGCTCTTCATGCGCTGCACCACGGACCCGGTCAGGAGAGACAAGTACCCGGCTGTCACACACCTCAAGTTCCTCACCAGGGAGAACTCGGAGCAGGTGCTGCTGTGTGCCTCCAGTCAGATGGGCAGCATCGTGGAGTGTTGGTCATTGCGGAAGGAAGGCCTCCCTGTCAATAACATATTCCAACATCGTTCACCAGTAGTGGGCGAGAAACAGCCGACGATCCTGAAATGGCGCATCCTCTCGGCCACCAATGATCTGGACCGCGTGTCGGCCGTGGCTCTGCCAAAGCTGCCAATCTCCATCTCCAACACTGACCTAAAGGTGGCGTCAGACACCAAGTTCTGCCCAGGCCTCGGCCTGGCCCTAGCCTTCCACGACGGCAGTATCCAGATCCTCCACCGGCTGTCCCTTCACACCATGGGCGTGTTCTATGGATCCTCCTCGGGCTCCTCCCAGCGGCCCGGTGATGAGCCGGCCATAAAGCGGCAGCGCCCCGGCGGCCCAACCGTCCACTTCAAGGCCCTGCAGTTCTCCTGGACCTCACTGGCCCTGGCCGGAGTGGACAACCACGGCAAGCTGCACATGATTCGCGTATCTCCATCCATGGGCCAGATGCTGGACATGAACACACTTCTGCGCCACCTGCTGTTCCTGCTGGAGTACTGCATGGTGACAGGCTACGACTGGTGGGACGTGCTGCTCCACGTGCAGCCTGGCATGGTCCATAACCTGGTGGAGAAGCTGCATGAGGAGTACATGAGACAGAACCAAGCCCTGCAGCAGGTGCTCTCGACACGTATCGTGGCGGTTAAGGCCTCCCTCTGTAAGCTGTCATCGGCCACAGCTGCGCGAGCTTGCGACTTCCACGCCAAGCTCCTCCTCATCGCCATTAGCTCCACCCTCAAGTCCTTGCTGAGACCCCACGTCCTCAACACTCCAGACAAGAGCCCCGGGGACAGGCTGGCAGAGATATGTTCCAAAAACACTGACACTGATATCGATAAGGTGATGATCAACCTGAAGACGGAGGAATTTGTGCTGGACGGCCCCCCACTCCAGTCTCTGCAGCAGCTCATCCAATGGGTGGGAGACTTTGTGCTGTACCTGATGGCCAACCTACCCAAtcagGGCTCCGTCGTGCGTCCCGGCTTTGGGTTTCTGCGCGACGGTTGGTCCCTGGGTATGCTGCGGGAGATGATGGTGATGATCCGCATCTGGGGCCTTCTGAAGCCTGGCTGCTTGCCCATCTACACGGCCACCTCGGACAACCAGGACAGCATGTCGCTGCTCTTCCGCCTGCTCACCAAGCTCTGGCTCTGCTCTCGGGACGAGGGCCACCCCCAGGAGCCAGATGAGCCGCTGATAGACGAATGCTGCCTGCTGCCCAGCCAGCTGCTGGTGCCCAGCATGGACTGGCTGCCTGTCAACGACGGGATCATCTGCAAGCTGCAGGGCAAGCACCCGCTGCGGCTTCAGTTTGGCAAGCCCTACAGCCTGCCGGGTCTCAACTCCACACCCCAGGTGGAGGTCTTCTCCAGGAGCCCGGGGGTCCAGAGGATGGATCATCTACGTTGTCTCTACATGGGAGTCTGCCCCACAGAGGACAGCAAAGCCTGTACCAGgTGTGGCTGTGTGACTATGCTCCGCTCCCCTAACAAGACCAACGCCATGAAGCAGTGGGAGCAGCGCTGGATCAAGAACTGCCTTTGTGGAGGCCTCTGGAGAAGGATCCCCTCCACACTGTCCTGAGATCTGTCCTGAGACCATTATCACCGCAAACCCTGACCTCAGGTCAGCCTTTGGACACTAGCCTGCATGACACTGCTGCCTCTTAGCAGATCTCTTTGGGGGACAGATGAAGTACTGGATATCCATACGGTTGTATTTCAAAGATCGCTGTTTGGAGAGGCGGTGATCATGCCGTCATTGGGGTTAAATGTGCCAGAGATACCTGTAAATAGGAACCACGTGTTTTTTATGTCTCTTTATATTCAAACCTGTGTCAAGAAAATAAACCTTATTTGGTGACCTT
>XM_021564688.2
CGTGTTATTAATTTTCGATGAATTTGTACTCTACCAAATACATTTCTAACGTTTTTACAAAAGAATAAGGCTGCAGGCAACTGAAAATACGCCTAAATTCGCTTGTCAGGGGTCCTACCACACCATCTTTGTATGTAACATGTTATAGGATGAATGCTGCAAAGTGCAATCAAGTACATGAAGGTGACTGAACATTTCTCTGATTGGACAAGGACACTTGCACAAACAGTGGAAAAGCATATGGTTGAATGATGGAGGTTGCCTATGTTTGTGAGTGGGAGAAGAGACCCAAGAGCAACCACTATCCTTCCATCCCACTGGTGTGTGCCTGGTCCTGCAGGAACCTCGTTGCCTTTACCACAGACCTAAAAAATGAGGAAGACGAGAAAGAAGTCAGTCATATGGTCCACATCATTGACACAGAACACCCATGGGATGTGTACTCCATTAACTCTGGACATGGCGAGGTCATATCCTGTCTGGAGTGGGACCAATCAGGTTCCAGGTTGCTGTCTGCTGATGGAGATGGGCAGATCAAGTGCTGGGCGATGGCAGATCACCTGGTGAACAGCTGGGAGAGTTCACTAGGGAGTGCAGAGGACGGAGACCCCATCATAGCTCTGTCCTGGCTGCACAATGGAGTTAAGCTGGCTCTGCATGTGGAGATGTCGGGCTCCACCAATTTCGGTGAGAAATTTTCACGGGTCAAGTTCTCACCGTCACTCACGCTGTTTGGGGGAAAGCCCATGGAGGGCTGGCTGGCAGTGACAGTGAGCGGCCTGGTCACCGTGTCCCTGCTGAAGCCCAACGGTCAGCTGCTCACAGCCAGCGAGAGCCTGTGTCGCCTGAGGGGCCGCGTAGCCCTGGCCGACATCGCCTTCACCGGCGGGGGTAACATTGTGGTGGCGGCCACGGATGGCAGCAGCTCATCACCTGTGCAGTTCTACAAGGTGTGCGTGAGCGTGGTCAACGAGAAGTGTCGCATCGACACTGAGCTGCTGCCCTCGCTCTTCATGCGCTGCACCACGGACCCGGTCAGGAGAGACAAGTACCCGGCTGTCACACACCTCAAGTTCCTCACCAGGGAGAACTCGGAGCAGGTGCTGCTGTGTGCCTCCAGTCAGATGGGCAGCATCGTGGAGTGTTGGTCATTGCGGAAGGAAGGCCTCCCTGTCAATAACATATTCCAACATCGTTCACCAGTAGTGGGCGAGAAACAGCCGACGATCCTGAAATGGCGCATCCTCTCGGCCACCAATGATCTGGACCGCGTGTCGGCCGTGGCTCTGCCAAAGCTGCCAATCTCCATCTCCAACACTGACCTAAAGGTGGCGTCAGACACCAAGTTCTGCCCAGGCCTCGGCCTGGCCCTAGCCTTCCACGACGGCAGTATCCAGATCCTCCACCGGCTGTCCCTTCACACCATGGGCGTGTTCTATGGATCCTCCTCGGGCTCCTCCCAGCGGCCCGGTGATGAGCCGGCCATAAAGCGGCAGCGCCCCGGCGGCCCAACCGTCCACTTCAAGGCCCTGCAGTTCTCCTGGACCTCACTGGCCCTGGCCGGAGTGGACAACCACGGCAAGCTGCACATGATTCGCGTATCTCCATCCATGGGCCAGATGCTGGACATGAACACACTTCTGCGCCACCTGCTGTTCCTGCTGGAGTACTGCATGGTGACAGGCTACGACTGGTGGGACGTGCTGCTCCACGTGCAGCCTGGCATGGTCCATAACCTGGTGGAGAAGCTGCATGAGGAGTACATGAGACAGAACCAAGCCCTGCAGCAGGTGCTCTCGACACGTATCGTGGCGGTTAAGGCCTCCCTCTGTAAGCTGTCATCGGCCACAGCTGCGCGAGCTTGCGACTTCCACGCCAAGCTCCTCCTCATCGCCATTAGCTCCACCCTCAAGTCCTTGCTGAGACCCCACGTCCTCAACACTCCAGACAAGAGCCCCGGGGACAGGCTGGCAGAGATATGTTCCAAAAACACTGACACTGATATCGATAAGGTGATGATCAACCTGAAGACGGAGGAATTTGTGCTGGACGGCCCCCCACTCCAGTCTCTGCAGCAGCTCATCCAATGGGTGGGAGACTTTGTGCTGTACCTGATGGCCAACCTACCCAAtcagGGCTCCGTCGTGCGTCCCGGCTTTGGGTTTCTGCGCGACGGTTGGTCCCTGGGTATGCTGCGGGAGATGATGGTGATGATCCGCATCTGGGGCCTTCTGAAGCCTGGCTGCTTGCCCATCTACACGGCCACCTCGGACAACCAGGACAGCATGTCGCTGCTCTTCCGCCTGCTCACCAAGCTCTGGCTCTGCTCTCGGGACGAGGGCCACCCCCAGGAGCCAGATGAGCCGCTGATAGACGAATGCTGCCTGCTGCCCAGCCAGCTGCTGGTGCCCAGCATGGACTGGCTGCCTGTCAACGACGGGATCATCTGCAAGCTGCAGGGCAAGCACCCGCTGCGGCTTCAGTTTGGCAAGCCCTACAGCCTGCCGGGTCTCAACTCCACACCCCAGGTGGAGGTCTTCTCCAGGAGCCCGGGGGTCCAGAGGATGGATCATCTACGTTGTCTCTACATGGGAGTCTGCCCCACAGAGGACAGCAAAGCCTGTACCAGgTGTGGCTGTGTGACTATGCTCCGCTCCCCTAACAAGACCAACGCCATGAAGCAGTGGGAGCAGCGCTGGATCAAGAACTGCCTTTGTGGAGGCCTCTGGAGAAGGATCCCCTCCACACTGTCCTGAGATCTGTCCTGAGACCATTATCACCGCAAACCCTGACCTCAGGTCAGCCTTTGGACACTAGCCTGCATGACACTGCTGCCTCTTAGCAGATCTCTTTGGGGGACAGATGAAGTACTGGATATCCATACGGTTGTATTTCAAAGATCGCTGTTTGGAGAGGCGGTGATCATGCCGTCATTGGGGTTAAATGTGCCAGAGATACCTGTAAATAGGAACCACGTGTTTTTTATGTCTCTTTATATTCAAACCTGTGTCAAGAAAATAAACCTTATTTGGTGACCTT
>XM_036952797.1
CGTGTTATTAATTTTCGATGAATTTGTACTCTACCAAATACATTTCTAACGTTTTTACAAAAGAATAAGGCTGCAGGCAACTGAAAATACGCCTAAATTCGCTTGTCAGGGGTCCTACCACACCATCTTTGTATGTAACATGTTATAGGATGAATGCTGCAAAGTGCAATCAAGTACATGAAGGTGACTGAACATTTCTCTGATTGGACAAGGACACTTGCACAAACAGTGGAAAAGCATATGGTTGAATGATGGAGGTTGCCTATGTTTGTGAGTGGGAGAAGAGACCCAAGAGCAACCACTATCCTTCCATCCCACTGGTGTGTGCCTGGTCCTGCAGGAACCTCGTTGCCTTTACCACAGACCTAAAAAATGAGGAAGACGAGAAAGTCAGTCATATGGTCCACATCATTGACACAGAACACCCATGGGATGTGTACTCCATTAACTCTGGACATGGCGAGGTCATATCCTGTCTGGAGTGGGACCAATCAGGTTCCAGGTTGCTGTCTGCTGATGGAGATGGGCAGATCAAGTGCTGGGCGATGGCAGATCACCTGGTGAACAGCTGGGAGAGTTCACTAGGGAGTGCAGAGGACGGAGACCCCATCATAGCTCTGTCCTGGCTGCACAATGGAGTTAAGCTGGCTCTGCATGTGGAGATGTCGGGCTCCACCAATTTCGGTGAGAAATTTTCACGGGTCAAGTTCTCACCGTCACTCACGCTGTTTGGGGGAAAGCCCATGGAGGGCTGGCTGGCAGTGACAGTGAGCGGCCTGGTCACCGTGTCCCTGCTGAAGCCCAACGGTCAGCTGCTCACAGCCAGCGAGAGCCTGTGTCGCCTGAGGGGCCGCGTAGCCCTGGCCGACATCGCCTTCACCGGCGGGGGTAACATTGTGGTGGCGGCCACGGATGGCAGCAGCTCATCACCTGTGCAGTTCTACAAGGTGTGCGTGAGCGTGGTCAACGAGAAGTGTCGCATCGACACTGAGCTGCTGCCCTCGCTCTTCATGCGCTGCACCACGGACCCGGTCAGGAGAGACAAGTACCCGGCTGTCACACACCTCAAGTTCCTCACCAGGGAGAACTCGGAGCAGGTGCTGCTGTGTGCCTCCAGTCAGATGGGCAGCATCGTGGAGTGTTGGTCATTGCGGAAGGAAGGCCTCCCTGTCAATAACATATTCCAACATCGTTCACCAGTAGTGGGCGAGAAACAGCCGACGATCCTGAAATGGCGCATCCTCTCGGCCACCAATGATCTGGACCGCGTGTCGGCCGTGGCTCTGCCAAAGCTGCCAATCTCCATCTCCAACACTGACCTAAAGGTGGCGTCAGACACCAAGTTCTGCCCAGGCCTCGGCCTGGCCCTAGCCTTCCACGACGGCAGTATCCAGATCCTCCACCGGCTGTCCCTTCACACCATGGGCGTGTTCTATGGATCCTCCTCGGGCTCCTCCCAGCGGCCCGGTGATGAGCCGGCCATAAAGCGGCAGCGCCCCGGCGGCCCAACCGTCCACTTCAAGGCCCTGCAGTTCTCCTGGACCTCACTGGCCCTGGCCGGAGTGGACAACCACGGCAAGCTGCACATGATTCGCGTATCTCCATCCATGGGCCAGATGCTGGACATGAACACACTTCTGCGCCACCTGCTGTTCCTGCTGGAGTACTGCATGGTGACAGGCTACGACTGGTGGGACGTGCTGCTCCACGTGCAGCCTGGCATGGTCCATAACCTGGTGGAGAAGCTGCATGAGGAGTACATGAGACAGAACCAAGCCCTGCAGCAGGTGCTCTCGACACGTATCGTGGCGGTTAAGGCCTCCCTCTGTAAGCTGTCATCGGCCACAGCTGCGCGAGCTTGCGACTTCCACGCCAAGCTCCTCCTCATCGCCATTAGCTCCACCCTCAAGTCCTTGCTGAGACCCCACGTCCTCAACACTCCAGACAAGAGCCCCGGGGACAGGCTGGCAGAGATATGTTCCAAAAACACTGACACTGATATCGATAAGGTGATGATCAACCTGAAGACGGAGGAATTTGTGCTGGACGGCCCCCCACTCCAGTCTCTGCAGCAGCTCATCCAATGGGTGGGAGACTTTGTGCTGTACCTGATGGCCAACCTACCCAAtcagGGCTCCGTCGTGCGTCCCGGCTTTGGGTTTCTGCGCGACGGTTGGTCCCTGGGTATGCTGCGGGAGATGATGGTGATGATCCGCATCTGGGGCCTTCTGAAGCCTGGCTGCTTGCCCATCTACACGGCCACCTCGGACAACCAGGACAGCATGTCGCTGCTCTTCCGCCTGCTCACCAAGCTCTGGCTCTGCTCTCGGGACGAGGGCCACCCCCAGGAGCCAGATGAGCCGCTGATAGACGAATGCTGCCTGCTGCCCAGCCAGCTGCTGGTGCCCAGCATGGACTGGCTGCCTGTCAACGACGGGATCATCTGCAAGCTGCAGGGCAAGCACCCGCTGCGGCTTCAGTTTGGCAAGCCCTACAGCCTGCCGGGTCTCAACTCCACACCCCAGGTGGAGGTCTTCTCCAGGAGCCCGGGGGTCCAGAGGATGGATCATCTACGTTGTCTCTACATGGGAGTCTGCCCCACAGAGGACAGCAAAGCCTGTACCAGgTGTGGCTGTGTGACTATGCTCCGCTCCCCTAACAAGACCAACGCCATGAAGCAGTGGGAGCAGCGCTGGATCAAGAACTGCCTTTGTGGAGGCCTCTGGAGAAGGATCCCCTCCACACTGTCCTGAGATCTGTCCTGAGACCATTATCACCGCAAACCCTGACCTCAGGTCAGCCTTTGGACACTAGCCTGCATGACACTGCTGCCTCTTAGCAGATCTCTTTGGGGGACAGATGAAGTACTGGATATCCATACGGTTGTATTTCAAAGATCGCTGTTTGGAGAGGCGGTGATCATGCCGTCATTGGGGTTAAATGTGCCAGAGATACCTGTAAATAGGAACCACGTGTTTTTTATGTCTCTTTATATTCAAACCTGTGTCAAGAAAATAAACCTTATTTGGTGACCTT

Function

symbol description
med16 Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED16 (mediator complex subunit 16).

NR:

description
mediator of RNA polymerase II transcription subunit 16 isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K15159 MED16; mediator of RNA polymerase II transcription subunit 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564609.2 False 3219 mRNA 0.54 15 16149712 16157673
XM_021564688.2 False 3039 mRNA 0.56 16 16149712 16157809
XM_036952797.1 True 3036 mRNA 0.56 16 16149712 16157809

Neighbor

gene id symbol gene type direction distance location
LOC110531327 LOC106573923 coding downstream 13419 16114792 ~ 16136293 (-)
LOC110490953 LOC106613612 coding downstream 73912 15995436 ~ 16075800 (-)
LOC110530936 LOC106573926 coding downstream 159237 15976376 ~ 15990475 (-)
ga45b LOC106573930 coding downstream 242573 15905184 ~ 15907139 (-)
LOC110490301 LOC106573931 coding downstream 466850 15638971 ~ 15682862 (-)
LOC110531395 LOC106613616 coding upstream 23705 16181514 ~ 16295527 (-)
LOC118941184 NA coding upstream 161946 16319755 ~ 16335818 (-)
LOC110531543 NA coding upstream 181438 16339247 ~ 16415642 (-)
LOC110491485 LOC106573921 coding upstream 268303 16426112 ~ 16432609 (-)
LOC118966506 NA coding upstream 439000 16596809 ~ 16601637 (-)
G15117 NA non-coding downstream 105642 16043424 ~ 16044070 (-)
G15067 NA non-coding downstream 195137 15954347 ~ 15954575 (-)
G14772 NA non-coding downstream 248026 15901457 ~ 15901686 (-)
G14763 NA non-coding downstream 251542 15897580 ~ 15898170 (-)
G14757 NA non-coding downstream 258282 15891223 ~ 15891430 (-)
G15194 LOC106573922 non-coding upstream 20468 16178277 ~ 16181159 (-)
G15199 NA non-coding upstream 27236 16185045 ~ 16185275 (-)
G15325 NA non-coding upstream 215837 16373646 ~ 16374031 (-)
G15348 NA non-coding upstream 230518 16388327 ~ 16388623 (-)
LOC110488740 cdc14a other downstream 808831 15325555 ~ 15394233 (-)
LOC110488330 LOC106613586 other downstream 966170 15175297 ~ 15183693 (-)
G14120 antithrombin other downstream 975682 15114926 ~ 15174030 (-)
LOC110487385 LOC106574065 other downstream 1190444 14955950 ~ 14959313 (-)
G13196 LOC106574055 other downstream 1781379 14366290 ~ 14368501 (-)
G15470 NA other upstream 373238 16531047 ~ 16531476 (-)
LOC110492105 homer3 other upstream 702840 16838135 ~ 16871992 (-)
G16100 LOC106573897 other upstream 973611 17131420 ~ 17136357 (-)
G16161 LOC106573901 other upstream 1097427 17255236 ~ 17257241 (-)

Expression


Co-expression Network