LOC118941184


Basic Information

Item Value
gene id LOC118941184
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16319755 ~ 16335818 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037508.1
ggtagagagaggaaaacgggggaaagaggtatttatgactgtcataaacctacccccaggtcAACGTCATGACAGGGGTATACTACAAAACAAGATCAagaagttagccagctaacttgtcTAAATATTCTAAAATCACTTATTTTTTTGAAAGATGAGCTTGAAATGGGTATGGTTGAATTGACCCAACAGCAAAAAAACACATCTAGGTGGATCTTTCATAATGAACCAGAAAATGGACAGTTATTTCTGTATATatttatcaaagttagctggctaactccttgatcctgctttgtagtatacccctcaggtcCCTGTGGACAAACAGAGGCTGATCTACAGGGGTAGGCAGCTTGAAGATGGCAAGACACTGGAACACTGACATCAAAAAAGGCCCTAAATGAGACCTATTTGGAGAAAGCAGACAAACTCTACTCCCTAATGACTGCCGTAACAGACAAGtgtgtgtttgtcaatGGTGAGAACACCAAGGTGCGCGTGTCAGAGCTGGAGGAGGAAGTGAGGGCGCTGAAGAAGGTCAACAAGGACCTGTATGACTTCTCCACACAGCTCCTCACCAAGCCCAGCTAGAAAAGAGCCTGGCCATGGTTCCCCGTCCCACCAGCAGGGACTCTACTGGGGAGATGACACTGCAAGCCCCCTTCACCACAGACCGGTAGGCTAGGGAAAGATGTTAGTATGTGTCATTCATATAGTTTATTTTGTAAGGGAGAGCGTACATTCAACAGGACCTGGGGTGCAAAAGTTGTATCATGGACCATATTGCCTTTGTCATGATCCCTGACCATATTTTGGATAAAGGATTTAATTTAAATTGACATGAAGAAAACATGTTCACCTTTTTTAGTGCTACACATGTTCAGTGTTAGCCACAGGATAATCAAAGTTGTGTAGTGCAGCCAGACTCAGCAGCATAATTGATCTTAGCCCTATATTGACTTAACAGAAGCTCCAGTCCCTTGACAACCTCAATTTACAGCCCTGTTCCTTTACACTCATCACCACTGCCTTTAAGCCCCAAAATTCCATCAGCCAAAAACGGGTATAACAGGATCCAGTTATTGCCCTCTGACTTTTTGTCCTCTGTCATCCGGCTAACCCAGTAAGAATCCCAAacttaaggttaaggttagggctctaCAGTGCGACCATTTTACTGCgcctaaatattttgctgtgcgacCTGGAATTTGTATTTTATGAGCACCAGTGTGCCCAGAAAAATgtaggattctagctttaatatCTGAAATGTTTTTCATTGTGCTCTTAAATTTCTTTGTGCGCCTACATTTTTCTACTACACCTAATAGATTGGATGGATTTGTGTGACAATTACCTGTTGTGCCCCCAGGTGTTTAGCATCGACGAGAATGTTCATTTCTGTCACAAAATGGGTACAGTTTGATCGCCATGGTTGGTAGGTACCCTTCACGCTATCTCTCAAGCAGAACTTTAAACCTCTCATTAAAATAGAAAGAAAATGGTGGTGTTAAATAGGGAACAGTGGAGTGTTTGATTTACCCTGTGGAACTAGCCAGAAGTCTGTGAGTTTTGTTTTTCAGCTTACACTACCTGTAGAAAACATGGATTTGGTTGTGTAGAGCTGCTGGGCAGTGTACAACTGCAGAATGGTTTTCTTTTCAGAATCCTTCAAAAAGAAACGCACAATTAACCGCTGTCAAAAAGGGAAGAGTTTGAGCTCTGAAATCGCCCTTCCTCTCATCACTGCTAATTCTCCACTGTGGGCACTACGTTAGAGGCAGCCACATAGAAACAGCTGTTGATTTTATCCTCTTTTTCTCAGTTGCCCAGCTTTGATGAGATCTAAAAAATGAAATAGAAAATCAAAAAGGGTCCTGTATTTGTGTGTGCCTCTTCGGTAGAGAGGGAACTGCCAAGAACAGCAGCCCTCCTGTGTAGAGAAAGCCATGGCTTTAGAACTTCACCAAGGAGAGAGATGACTTACACACACCCCAACGTTGACTCCAATTAACTCACTGTTGGGGGGTGGGGATCAGGTCAGCGAGATGGAGCTATTGAGGACCTTGATCACAGATTAATCGGAGAGTCCAAGGGTGAAGAGTGTTCAGTGGGGGGATTACGTGTTCCAGTAATGAAGACAACAATACCAACTGGATttgtacttttttgttgttgttgtgtattctccacaataaatgtttttatATCTTTCTGAGAACATGGGA

Function

NR:

description
LOW QUALITY PROTEIN: WD repeat-containing protein 18-like

GO:

id name namespace
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037508.1 True 2234 mRNA 0.43 3 16319755 16335818

Neighbor

gene id symbol gene type direction distance location
LOC110531395 LOC106613616 coding downstream 24228 16181514 ~ 16295527 (-)
LOC110491230 med16 coding downstream 161946 16149712 ~ 16157809 (-)
LOC110531327 LOC106573923 coding downstream 183462 16114792 ~ 16136293 (-)
LOC110490953 LOC106613612 coding downstream 243955 15995436 ~ 16075800 (-)
LOC110530936 LOC106573926 coding downstream 329280 15976376 ~ 15990475 (-)
LOC110531543 NA coding upstream 3429 16339247 ~ 16415642 (-)
LOC110491485 LOC106573921 coding upstream 90294 16426112 ~ 16432609 (-)
LOC118966506 NA coding upstream 260991 16596809 ~ 16601637 (-)
LOC118941208 LOC106573916 coding upstream 269555 16605373 ~ 16608827 (-)
LOC118941412 LOC106573916 coding upstream 387413 16723231 ~ 16726607 (-)
G15199 NA non-coding downstream 134480 16185045 ~ 16185275 (-)
G15194 LOC106573922 non-coding downstream 138596 16178277 ~ 16181159 (-)
G15117 NA non-coding downstream 275685 16043424 ~ 16044070 (-)
G15067 NA non-coding downstream 365180 15954347 ~ 15954575 (-)
G15325 NA non-coding upstream 37828 16373646 ~ 16374031 (-)
G15348 NA non-coding upstream 52509 16388327 ~ 16388623 (-)
G15363 NA non-coding upstream 67743 16403561 ~ 16403823 (-)
G15364 NA non-coding upstream 68282 16404100 ~ 16404417 (-)
G15451 NA non-coding upstream 114699 16450517 ~ 16450732 (-)
LOC110488740 cdc14a other downstream 978874 15325555 ~ 15394233 (-)
LOC110488330 LOC106613586 other downstream 1136213 15175297 ~ 15183693 (-)
G14120 antithrombin other downstream 1145725 15114926 ~ 15174030 (-)
LOC110487385 LOC106574065 other downstream 1360487 14955950 ~ 14959313 (-)
G15470 NA other upstream 195229 16531047 ~ 16531476 (-)
LOC110492105 homer3 other upstream 524831 16838135 ~ 16871992 (-)
G16100 LOC106573897 other upstream 795602 17131420 ~ 17136357 (-)
G16161 LOC106573901 other upstream 919418 17255236 ~ 17257241 (-)
LOC110497564 LOC106573866 other upstream 1754062 18089520 ~ 18098678 (-)

Expression


Co-expression Network