LOC118941201


Basic Information

Item Value
gene id LOC118941201
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16578956 ~ 16592967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953512.1
GGGCATGATaactgtacttttagtttatggtaGACACAGCTTGTTCGCACATTTTCCAATTTTACCACTAGTTATGAACGCAACATGAGTTTCTACATCCCCCTCTCTTGTTAAATAAAAGTGCCACCACTGAAATACGCCTGTTACTTCCTGCCTCGTTGGGTGTTTGTCTGTCTTTTTCGAAACCATCATAGAGCATTTTCATTTAATGCAAGATATTGGACCTGTTTCCCAACCCAGAGTACCACTGCACACCTGCCTGTCTACCAGTCCCAGATCAGCCCACAGTACCACTGCTGTTCACCTGCTTGTCTATCTGTCCACGATGAAGCTCatcttgactctctctctcatctgcatTCACTTCTGCTCAGTTGAGATGCTGCAGTGTTTCAACTGTACTGATGCAGCATGTACAAACTCTTCTTTAGTTACCTGTCCAGCCTCAAATGAAAGATGTCTCACTGCAACCAGAACCATACAAGGTCCCGATAATACCACCGTGGTACTCAAAATGTGTTCACCATCCTCCATCTGTGTAACTCCTCTTAACACTGAAGTCACAGTGTCAGGGAACTTGGGCATCATAAGGGCTGcctctaaccagctctgctgtaACACCAATGGGTGCAACAAGGAAACTCTGTCTGCCCCGAGTTCACTGGCTAACGGAAGACAATGTACCTCTTACAGCAGCTTCCAAGGCGTTGTGCATAACAGCACTGTGGCCTGCCTGGGGGTGGAGGACCAGTGCTTGAGCTTCAGCGGCAATGTACTTGGCTCAATCAATTATATGGTGAACATCCAGGGCTGTACATCTACCAACGTGTGCAACTATATTGATCAACTGCTGCCCTCAAGTTACATCAACTTTGTGCAATTCACCTGTAACACAGCCCCTTTACCTGTAACTGTAACCAAAGCCCATAACACAGCCTGGTCCATTAGACTGAGCCTAGTCCCTCTGCTGCTGGGCCTCACTATCAGCAAACTCATCTGATATAAACAGAGATGAACATATCGGGACTCATCTGACAACATAATGCATTGATTACAAAACAACAGAATGTACAATGATTTTTATGTATTGTGAAATACGTACTATAattgaaaatctgttgtttataTGGAATTTGCCAGATGATGCCCTGTGACATTATATATGCTTGCTTGAGGAAATACTTTCTTATATATTATTCTGTATATTTGATAAAGTGGGATTGCTTGTAAGTTTAAAACAAATAATCTGTCAATGCCAATAAAGTTTCTATCACTTTACCAAAATGGAAA
>TU18087
TGAAATACGCCTGTTACTTCCTGCCTCGTTGGGTGTTTGTCTGTCTTTTTCGAAACCATCATAGAGCATTTTCATTTAATGCAAGATATTGAGTACCACTGCACACCTGCCTGTCTACCAGTCCCAGATCAGCCCACAGTACCACTGCTGTTCACCTGCTTGTCTATCTGTCCACGATGAAGCTCatcttgactctctctctcatctgcatTCACTTCTGCTCAGTTGAGATGCTGCAGTGTTTCAACTGTACTGATGCAGCATGTACAAACTCTTCTTTAGTTACCTGTCCAGCCTCAAATGAAAGATGTCTCACTGCAACCAGAACCATACAAGGTCCCGATAATACCACCGTGGTACTCAAAATGTGTTCACCATCCTCCATCTGTGTAACTCCTCTTAACACTGAAGTCACAGTGTCAGGGAACTTGGGCATCATAAGGGCTGcctctaaccagctctgctgtaACACCAATGGGTGCAACAAGGAAACTCTGTCTGGTAAGAGACTTGTGTCCTTTACTTAAATTAAATGTGGTTTTCAACAATGTATTTGATGTCCTGATTTCAATTGTCATAGTTTGAAGAAATATATGATCCGAGTGTGTTTCTTACATATCTGGACAGCATCCATGCCCATCTTCAGAAAatgtctgaaaccctacctctttagAGTATCTTAACTAAATCCcatagcgccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953512.1 False 1290 mRNA 0.43 6 16578956 16592967
TU18087 True 701 TUCP 0.43 4 16579086 16580882

Neighbor

gene id symbol gene type direction distance location
LOC118941197 NA coding upstream 16772 16555492 ~ 16562184 (+)
LOC110491555 LOC106573918 coding upstream 90016 16479980 ~ 16488940 (+)
LOC110491417 LOC106573922 coding upstream 397974 16157932 ~ 16180982 (+)
LOC110490588 LOC106573927 coding upstream 603100 15922503 ~ 15975856 (+)
cart1 LOC106573929 coding upstream 656871 15920501 ~ 15922085 (+)
LOC118941290 NA coding downstream 19633 16612600 ~ 16624198 (+)
LOC118941333 NA coding downstream 79269 16672236 ~ 16678840 (+)
LOC110491738 NA coding downstream 102765 16695732 ~ 16709685 (+)
LOC118941434 NA coding downstream 137434 16730401 ~ 16751454 (+)
LOC100135798 LOC100135798 coding downstream 233053 16826020 ~ 16827539 (+)
G15391 LOC106581772 non-coding upstream 66303 16512426 ~ 16512653 (+)
G15384 NA non-coding upstream 138921 16439823 ~ 16440035 (+)
G15372 NA non-coding upstream 159937 16418405 ~ 16419019 (+)
G15374 NA non-coding upstream 161528 16417221 ~ 16417428 (+)
G15368 NA non-coding upstream 171556 16406601 ~ 16407400 (+)
G15416 NA non-coding downstream 12137 16605104 ~ 16725738 (+)
G15418 NA non-coding downstream 20607 16613574 ~ 16614654 (+)
G15421 NA non-coding downstream 130906 16723873 ~ 16725578 (+)
G15438 NA non-coding downstream 150881 16743848 ~ 16748780 (+)
G15502 NA non-coding downstream 169982 16762949 ~ 16763209 (+)
LOC110490510 LOC106573976 other upstream 863274 15694810 ~ 15716774 (+)
sass6 sass6 other upstream 1110968 15447458 ~ 15468011 (+)
G13639 NA other upstream 1616953 14961554 ~ 14962003 (+)
G13434 NA other upstream 1766332 14811771 ~ 14812624 (+)
G13391 NA other upstream 1878226 14700176 ~ 14700730 (+)
LOC110492606 LOC106573909 other downstream 323532 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 370090 16962997 ~ 16967790 (+)
LOC110495874 LOC106573877 other downstream 1061240 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 1382997 17975918 ~ 17991176 (+)
G17420 NA other downstream 2289756 18882723 ~ 18956208 (+)

Expression


Co-expression Network