LOC118941290


Basic Information

Item Value
gene id LOC118941290
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16612600 ~ 16624198 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037575.1
TCCCGCCTCTAGACCAACTTAGTTGTGAGAAAGTCTGTATCTTTAGAGGAGGTAGCCATATGACTGTATCATTTATTGATATTCTCCTAATTAGTGATTAACTGACGGTTCTTAGCAGGATTGGGctaaatgctgaaataaaaacCTGAGGTGAAGAACTATCTTTCCCTGCAGTAGAAGTCCatgtgagaggagagagctgtATGATACTAGAAGGACAAGACACCAATAAGGGGCTCACAGCAGGTGGGCTTTTCTCCTATCCAGAGCACCAACTGAAACAGACAGAATGAACAGAGCACGAGGACTGTGTTTCACTTTACTACTACTGGGGTGTGTACATGGGAGCAAGTCTCCTCAAAGAGAAGTGGTATTCAGTAGAGGGATCCAACTCTTTGTTGAAGGTTTGAACCCTTCTAATCCCTCTGTAGTAATCCTCTCCTCATTTGGGCACAACCCTGGTGCTTCAGCTACACTGGTGTGTATACTCAGTGGTTTAAAAACACACCATTTGTTGGACATCATTTGGTGGATCAACAACACAGTGGTAACCCCTGAGAACAATGCCATTTGGAGTTCCAGGGGAAGTGATGGCACGTACACAACTACCGGACTGTGGACTATGTCTGGAAAGGACTGGAATCCCTATAGTAACTATGAGTGTGGAACCAGACATGAAGGAAAGCATTATAGAAATGGTACACAGCCCTCACTTTGCATGGATTTTACTTGATTACAAATATTTGTTAACCTATCAAAAATTATCCTTAGCATTTCATGTACAATCTTTACTATTATTAAAGTATTCATGATGTTTCTTGAGTATTTTATTGAAagatcaggtagcctagtggttagagctttggaatagtaactgaaaggttgcaagttcaaatccctgagttgacaaggtacaaatctgttgttcttccccttaagagacagttaacccactgttcctaggctgtcactgaaaataagaatttgttcttaactgatttgcctagttaaagaaaaaaatacaaataaataaatacagattATCATTCTAGTTGCCATTACCATATGTTGACACTAGATGGTGCTCACTGCCTGCAGTTGTAGTGTTTGTGTTGAGTGATGGTAAATTCATATGCATGGCATCTCTGTTTCACAAACTCACTGATTTCAACTGAGACAATGCTGCTCTTGTTCCTGGATGTATCTCTCAACAACAAGCTGTTATACAAATGGTCATATGCACAAAGCTGAATACTCTTTAGTTTATGTTCCAAACAACAATTGTGTTTCTGTCAGCCCTTTAAAAATATTTTTGCATAATTTATAAGTTCATAATA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037575.1 True 1337 mRNA 0.39 3 16612600 16624198

Neighbor

gene id symbol gene type direction distance location
LOC118941201 NA coding upstream 19633 16578956 ~ 16592967 (+)
LOC118941197 NA coding upstream 50416 16555492 ~ 16562184 (+)
LOC110491555 LOC106573918 coding upstream 123660 16479980 ~ 16488940 (+)
LOC110491417 LOC106573922 coding upstream 431618 16157932 ~ 16180982 (+)
LOC110490588 LOC106573927 coding upstream 636744 15922503 ~ 15975856 (+)
LOC118941333 NA coding downstream 48038 16672236 ~ 16678840 (+)
LOC110491738 NA coding downstream 71534 16695732 ~ 16709685 (+)
LOC118941434 NA coding downstream 106203 16730401 ~ 16751454 (+)
LOC100135798 LOC100135798 coding downstream 201822 16826020 ~ 16827539 (+)
ddx49 ddx49 coding downstream 251498 16875696 ~ 16885634 (+)
G15391 LOC106581772 non-coding upstream 99947 16512426 ~ 16512653 (+)
G15384 NA non-coding upstream 172565 16439823 ~ 16440035 (+)
G15372 NA non-coding upstream 193581 16418405 ~ 16419019 (+)
G15374 NA non-coding upstream 195172 16417221 ~ 16417428 (+)
G15368 NA non-coding upstream 205200 16406601 ~ 16407400 (+)
G15421 NA non-coding downstream 99675 16723873 ~ 16725578 (+)
G15438 NA non-coding downstream 119650 16743848 ~ 16748780 (+)
G15502 NA non-coding downstream 138751 16762949 ~ 16763209 (+)
G15519 NA non-coding downstream 156141 16780339 ~ 16780597 (+)
G15536 NA non-coding downstream 172125 16796323 ~ 16796597 (+)
LOC110490510 LOC106573976 other upstream 896918 15694810 ~ 15716774 (+)
sass6 sass6 other upstream 1144612 15447458 ~ 15468011 (+)
G13639 NA other upstream 1650597 14961554 ~ 14962003 (+)
G13434 NA other upstream 1799976 14811771 ~ 14812624 (+)
LOC110492606 LOC106573909 other downstream 292301 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 338859 16962997 ~ 16967790 (+)
LOC110495874 LOC106573877 other downstream 1030009 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 1351766 17975918 ~ 17991176 (+)
G17420 NA other downstream 2258525 18882723 ~ 18956208 (+)

Expression


Co-expression Network