LOC100135798 (LOC100135798)


Basic Information

Item Value
gene id LOC100135798
gene name LOC100135798
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16826020 ~ 16827539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603690.2
ATATAACTTCCGCCTTGTACAGTCTCTTTTCGTTAAGGCTCAGCCATCGGCCGGCCTGCCAACATGCAGATCTTCGTGAAGACGTTGACGGGGAAAACAATCACCCTTGAGGTTGAGCCCAGCGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCACCTGATCAACAGCGTCTGATCTTCGCTGGCAAACAACTTGAGGATGGTCGCACCTTGTCAGACTACAACATCCAGAAAGAGTCCACCCTTCATCTTGTGCTGCGTCTTCGTGGAGGCATTATCGAGCCATCTTTGAGACAGCTGGCCCAGAAGTACAACTGTGACAAAATGATCTGCCGCAAGTGCTACGCTCGCCTCCATCCTCGTGCTGTCAACTGCCGCAAGAAGAAGTGTGGACACACAAACAACCTGCGCCCCAAGAAGAAGCTGAAGTAGACAGTTGGCTTGGTGCTTTTTGTGGAACATAAGCACAACTGTTAAATAAACATACCAAAATGTA
>XM_021611281.2
CGCATTTATTGCGTAATAGAAATACACCAGTGTCCCTCCGCTAAATAACTGTCTAAATATCCATTTGGTTGTCATATGTGAGACGTGTAAAGTCTAAGTATGAGTATTGAAATATAACGAGCTCCAGCATGTGGCAAAGAAGCACCCGCTTGACCGCAGCtgttggctagttagttagcttgccacagctaacgttagctaCCTGCCAACATGCAGATCTTCGTGAAGACGTTGACGGGGAAAACAATCACCCTTGAGGTTGAGCCCAGCGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCACCTGATCAACAGCGTCTGATCTTCGCTGGCAAACAACTTGAGGATGGTCGCACCTTGTCAGACTACAACATCCAGAAAGAGTCCACCCTTCATCTTGTGCTGCGTCTTCGTGGAGGCATTATCGAGCCATCTTTGAGACAGCTGGCCCAGAAGTACAACTGTGACAAAATGATCTGCCGCAAGTGCTACGCTCGCCTCCATCCTCGTGCTGTCAACTGCCGCAAGAAGAAGTGTGGACACACAAACAACCTGCGCCCCAAGAAGAAGCTGAAGTAGACAGTTGGCTTGGTGCTTTTTGTGGAACATAAGCACAACTGTTAAATAAACATACCAAAATGTA
>NM_001124194.1
ATGCAGATCTTCGTGAAGACGTTGACGGGGAAAACAATCACCCTTGAGGTTGAGCCCAGCGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCACCTGATCAACAGCGTCTGATCTTCGCTGGCAAACAACTTGAGGATGGTCGCACCTTGTCAGACTACAACATCCAGAAAGAGTCCACCCTTCATCTTGTGCTGCGTCTTCGTGGAGGCATTATCGAGCCATCTTTGAGACAGCTGGCCCAGAAGTACAACTGTGACAAAATGATCTGCCGCAAGTGCTACGCTCGCCTCCATCCTCGTGCTGTCAACTGCCGCAAGAAGAAGTGTGGACACACAAACAACCTGCGCCCCAAGAAGAAGCTGAAGTAGACAGTTGGCTTGGTGCTTTTTGTGGAACATAAGCACAACTGTTAAATAAACATACCAAAATGTA

Function

NR:

description
ubiquitin

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02927 RP-L40e, RPL40, UBA52; ubiquitin-large subunit ribosomal protein L40e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603690.2 False 514 mRNA 0.49 5 16826020 16827539
XM_021611281.2 False 661 mRNA 0.47 5 16826124 16827539
NM_001124194.1 True 451 mRNA 0.48 4 16826527 16827539

Neighbor

gene id symbol gene type direction distance location
LOC118941434 NA coding upstream 74566 16730401 ~ 16751454 (+)
LOC110491738 NA coding upstream 116335 16695732 ~ 16709685 (+)
LOC118941333 NA coding upstream 147180 16672236 ~ 16678840 (+)
LOC118941290 NA coding upstream 201822 16612600 ~ 16624198 (+)
LOC118941201 NA coding upstream 233053 16578956 ~ 16592967 (+)
ddx49 ddx49 coding downstream 48157 16875696 ~ 16885634 (+)
LOC110492606 LOC106573909 coding downstream 88943 16916482 ~ 16920945 (+)
LOC110492686 LOC106573907 coding downstream 105849 16933335 ~ 16935884 (+)
LOC110492876 LOC106613263 coding downstream 135458 16962997 ~ 16967790 (+)
LOC110493012 NA coding downstream 149328 16976867 ~ 16980827 (+)
G15538 NA non-coding upstream 28420 16797312 ~ 16797600 (+)
G15536 NA non-coding upstream 29423 16796323 ~ 16796597 (+)
G15519 NA non-coding upstream 45423 16780339 ~ 16780597 (+)
G15502 NA non-coding upstream 62811 16762949 ~ 16763209 (+)
G15438 NA non-coding upstream 77240 16743848 ~ 16748780 (+)
G15552 NA non-coding downstream 6331 16833870 ~ 16834176 (+)
G15563 NA non-coding downstream 27646 16855185 ~ 16855466 (+)
G15564 NA non-coding downstream 27936 16855475 ~ 16855706 (+)
G15630 NA non-coding downstream 46490 16874029 ~ 16874252 (+)
G15655 NA non-coding downstream 77580 16905119 ~ 16905322 (+)
LOC110490510 LOC106573976 other upstream 1110338 15694810 ~ 15716774 (+)
sass6 sass6 other upstream 1358032 15447458 ~ 15468011 (+)
G13639 NA other upstream 1864017 14961554 ~ 14962003 (+)
G13434 NA other upstream 2013396 14811771 ~ 14812624 (+)
LOC110495874 LOC106573877 other downstream 826668 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 1148425 17975918 ~ 17991176 (+)
G17420 NA other downstream 2055184 18882723 ~ 18956208 (+)

Expression


Co-expression Network