ddx49 (ddx49)


Basic Information

Item Value
gene id ddx49
gene name ddx49
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16875696 ~ 16885634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566464.2
CCATAGGAGGAGCTAATATTGACGTCACCAAAATGCGACAGACGTAAAATAACACGAGGATGATCTTCTGGGATTTCAGAGGATAATTTTGAACACTTTGGCTCACAAAACCAAGTATAATATATACTTTTCAATCTGGAATTTTGGAGAACTGCAAAATGTCGGATTTTTCCTCTCTCGGTCTGTCAGATTGGCTGATTCAACAATGTAAACAAATGGGGATCAGTAAACCAACTCAAGTCCAGGAAAACTGTATGCCACCGATTCTGGAAGGTCGGGATTGTATGGGTTGTGCCAAGACTGGCAGTGGAAAGACAGCTGCCTTTGTGCTACCAGTGCTACAGAAATTATCTGAGGACCCATATGGAATCTTCTGTTTAGTTCTCACACCTACCAGGGAATTGGCTTACCAGATTGCTGAACAGTTTAGAGTCCTGGGAAAACCAATGGGCTTGCGGGACTGCATCATTGTTGGTGGAATGGATATGATCACACAGGCCTTGGAGCTCTCTAAGAAGCCACACGTCGTTGTAGCCACTCCAGGAAGACTGGCAGACCACATTCGGAGCTCCGACACATTCAGCATCAAGAAGATCCAGTTTCTGATCCTTGATGAGGCCGACCGCCTGCTTGAGCAAGGCTGCACAGACTTCACCAAAGACTTGGAGGTGATCCTGGCCGCGGTGCCTGTCAAACGCCAGACGCTGCTTTTCAGTGCCACCCTCACAGACACACTACAGGAGCTCAAGGGCATCGCCATGAACAAGCCCTTCTTCTGGGAAAGCAAGTCCGAGGTCCGCACGGTAGAGGAGTTGGATCAAAGGTACATCCTGAcaccagagaaagtgaaagatGCCTACCTAGTGCACCTGATCCAGAAGTTTCAAGATGAGCACGACGACTGGTCGATCATGATCTTCACCAACACCTGCAAAAATTGCCAAATCCTCACAATGATGATGCAGAAATTCAACTTTCCAACCATCTCCTTGCATTCAATGATGAAGCAGAAACAACGTTTCGCCAACCTCGCGAAGTTCAAGTCCAGTGTCTTTAAAATCCTGATTGCAACTGATGTGGCTTCCAGAGGTCTAGATATTCCAACAGTCCAGGTTGTCATCAACCACAACACGCCAGGTCTGCCCAAGATCTACATTCACAGAGTCGGCCGAACTGCCAGAGCAGGAAGGCATGGTGTCTCGATCACACTGGTGACACAGTATGACATCCACTTGGTTCATTCCATTGAGGGACAGATCCAGGCCAAACTGAAAGAATATccagtggaggagaaagaggttCTGAAGATCCTCACTCAAGTCAACGTGGCCAGACGGGAGTGTGAAATTAAACTTGAGTCAACGGATTTTGATGAGAAAAAGGAGATCAACAAGAGAAAACAGATGATTTTGGAGGGGAAAGATCCAGACGTGGAGGCAAAGAGAAAGGCTGAACTGGAGAAGATAAGGAGTGAGAAGAAGTTGTTCAAGGAGAGGATACAGGAAACAATTCAGAAGAAACAACATGGGATGCAGAAGAaactgatgaagcaaaaacacaTTCAAAAGGAAAAGGCAGTGAAGTCCACATAAAGCAACACTGTACATTTATGAATTGTTTCATTGAAATTTCATTTCAACATGTTTTATCTGTACGTTTCCAAATAAATGGCAGTGCATCAACATTTTGCTTTCCAAACCTTTGACAGAAGCAAACTTTATTAATGTTTTACAAGAAAGGACTCAAGGCGAAATGTCTGGAATTAATTTTCACTGCAACTCCATGAATTGCACATATTTTCAAATGCTGGGAAGGAAGGCAGAGATTACTGTACTAAAATATCCTAAAACATGTCAGGAATCAATAGATAATGTCGATCAAACGACTAAGCATGTTTCAACCACGACTAGCTATTTGACAGCATGATTGTCATACAATGTCTTTTGGATTGACAAATTCAAAGTCAAGTGATGACAAACAAAAATTAATGGACATCGGAAGACAAAGCAGGTTGTGAGCTAAAATTAATATTCTCAATTTGGTGCTAAGCacccaaacatttctaaaaactgatAGACAAGGATTTCTAAATACAAAAGTCCCATGGATAGTTTAAAGGACAAATCCACAAAAActattagtccactgttgatacagtcccaaaatgttttgcatgtcatcaTAATGACGTGGAGGTGACACTGATTAAGTCCAATATCTTAACTTTTGGGGCCATCACCAGTtggactaatgaaaaaaataGTTTGTGGCTTTTCCCTTTAGGGATTGATTTAAAACCTAAAAATAAAACCATTATTTCACCACCCTTTGTCATCAGATAACTACTTAGGTCAAATGTTGTCtacaaccccccccctccccacaacacacacacaaaaaaa

Function

symbol description
ddx49 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human DDX49 (DEAD-box helicase 49).

NR:

description
probable ATP-dependent RNA helicase DDX49

GO: NA

KEGG:

id description
K14778 DDX49, DBP8; ATP-dependent RNA helicase DDX49/DBP8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566464.2 True 2402 mRNA 0.43 13 16875696 16885634

Neighbor

gene id symbol gene type direction distance location
LOC100135798 LOC100135798 coding upstream 48157 16826020 ~ 16827539 (+)
LOC118941434 NA coding upstream 124242 16730401 ~ 16751454 (+)
LOC110491738 NA coding upstream 166011 16695732 ~ 16709685 (+)
LOC118941333 NA coding upstream 196856 16672236 ~ 16678840 (+)
LOC118941290 NA coding upstream 251498 16612600 ~ 16624198 (+)
LOC110492606 LOC106573909 coding downstream 30848 16916482 ~ 16920945 (+)
LOC110492686 LOC106573907 coding downstream 47754 16933335 ~ 16935884 (+)
LOC110492876 LOC106613263 coding downstream 77363 16962997 ~ 16967790 (+)
LOC110493012 NA coding downstream 91233 16976867 ~ 16980827 (+)
LOC110493316 LOC106573897 coding downstream 96875 16982509 ~ 17136370 (+)
G15630 NA non-coding upstream 1444 16874029 ~ 16874252 (+)
G15564 NA non-coding upstream 19990 16855475 ~ 16855706 (+)
G15563 NA non-coding upstream 20230 16855185 ~ 16855466 (+)
G15552 NA non-coding upstream 41520 16833870 ~ 16834176 (+)
G15538 NA non-coding upstream 78096 16797312 ~ 16797600 (+)
G15655 NA non-coding downstream 19485 16905119 ~ 16905322 (+)
G15672 NA non-coding downstream 22536 16908170 ~ 16908425 (+)
G15692 NA non-coding downstream 44483 16930117 ~ 16930353 (+)
G15701 NA non-coding downstream 51902 16937536 ~ 16938307 (+)
LOC118941201 NA other upstream 294814 16578956 ~ 16592967 (+)
LOC110490510 LOC106573976 other upstream 1160014 15694810 ~ 15716774 (+)
sass6 sass6 other upstream 1407708 15447458 ~ 15468011 (+)
G13639 NA other upstream 1913693 14961554 ~ 14962003 (+)
G13434 NA other upstream 2063072 14811771 ~ 14812624 (+)
LOC110495874 LOC106573877 other downstream 768573 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 1090330 17975918 ~ 17991176 (+)
G17420 NA other downstream 1997089 18882723 ~ 18956208 (+)

Expression


Co-expression Network