LOC110492876 (LOC106613263)


Basic Information

Item Value
gene id LOC110492876
gene name LOC106613263
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16962997 ~ 16967790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567371.2
TTACATCACTGAGGTATAAAGTTACATGTGCTGATGCGGAAGTGAGTCAGTTCTCATTCACTTTACTTACTATTTTAACTCAACTAGTGTGTCAGCTAAACTGCTACATCAGATGGGTTCGATTTCGATACTTTCAAAAGTAGATATTGATTAGCGTGTGATCAACATTTGCCAGGCATGCACGAGCCAGAGTTAGCTAGTTAATGCGTTGCAGATGACTGGTCTCCTGTATATTAATCATGGTAATTCCTCGAGGTAAAAATGTTCTTGTGCGGATTTCATTCTATTGGAAACCACTGTTACAAGGAAGATTGCTCATTTTAACAAACACCCTCAGTGGAGGTGTTATGTTGTCTCTGGGAGATATCATACAGCAAACCAGGGAAAAAATGAAAGATCCTCAGAAAATTCGTGACTGGAGTCGCACAGGGCATATGTTTGGAGTGGGTTGCTCTATGGGACCTGTCCTCCACTACTGGTATTCATGGCTGGATAAAATCTACATTGGCAAAGCCTTGCACACTGTAGGCAAGAAAGTCCTAGTGGACCAGCTAGTTTGCTCACCAATCCTTGGAGCTTGGTACTTTTTAGGCATGGGAGTAATGGAGGGACACGGTCTATCCAAAGGCGCGCTGGAATTCAAAGAGAAGTTCTGGGAGTTCTATAAGGCTGATTGGTGTGTCTGGCCTGCCGCACAGCTGATCAACTTCTATTTCCTTTCACCCCAATACCGGGTCCTTTATGTGAACACAATAACCCTGGGTTGGGACACCTACCTGTCTTACCTCAAACACAGAGAAGATGATCAACCAGGAGAGCTCGTTCTTGACAGTGGTGTCATAGAGGTGACCCAGGAGGCTGTTGGGCCCATCGCTCCAGCTAAACGGTTTGAGGAGTAGGTTTAGCCCTAGTACTGAACTCcaaatacactgctccaaaaaataaagggaacactaaaacaacacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgtccacttaggaagctaCACTGATttccaatacatttcacatgctgttgtgcaaatggaatagacaacagttggaaattataggcaattagcaagacacccccaataaaggagtggttctgcaggtggggaccacagaccacttctcagttcctatgcttcctggctgatgttttggtcacttttgaatgctggcagtgctttcactctagtggtagcatgagacggagtctacaaccc
>TU18429
CTTTACTTACTATTTTAACTCAACTAGTGTGTCAGCTAAACTGCTACATCAGATGGGTTCGATTTCGATACTTTCAAAAGTAGATATTGATTAGCGTGTGATCAACATTTGCCAGGCATGCACGAGCCAGAGTTAGCTAGTTAATGCGTTGCAGATGACTGGTCTCCTGTATATTAATCATGGTAATTCCTCGAGGTAAAAATGTTCTTGTGCGGATTTCATTCTATTGGAAACCACTGTTACAAGGAAGATTGCTCATTTTAACAAACACCCTCAGTGGAGGTGTTATGTTGTCTCTGGGAGATATCATACAGCAAACCAGGGAAAAAATGAAAGATCCTCAGAAAATTCGTGACTGGAGTCGCACAGGCATGGGAGTAATGGAGGGACACGGTCTATCCAAAGGCGCGCTGGAATTCAAAGAGAAGTTCTGGGAGTTCTATAAGGCTGATTGGTGTGTCTGGCCTGCCGCACAGCTGATCAACTTCTATTTCCTTTCACCCCAATACCGGGTCCTTTATGTGAACACAATAACCCTGGGTTGGGACACCTACCTGTCTTACCTCAAACACAGAGAAGATGATCAACCAGGAGAGCTCGTTCTTGACAGTGGTGTCATAGAGGTGACCCAGGAGGCTGTTGGGCCCATCGCTCCAGCTAAACGGTTTGAGGAGTAGGTTTAGCCCTAGTACTGAACTCcaaatacactgctccaaaaaataaagggaacactaaaacaacacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgtccacttaggaagctaCACTGATttccaatacatttcacatgctgttgtgcaaatggaatagacaacagttggaaattataggcaattagcaagacacccccaataaaggagtggttctgcaggtggggaccacagaccacttctcagttcctatgcttcctggctgatgttttggtcacttttgaatgctggcagtgctttcactctagtggtagcatgagacggagtctacaacccacacaagtggctcaggtagtgcagctcatccaggatggaacatcaatgcgagctgtggcaagaaggtttgctgtgtctgtcagcgtagtgtccagagcatggaggcgctaccaggagacaggccagtacatcaggagacctggaggaggccttaggagggcaacaacccagcagcaggaccgctacctccgcctttgtgcaaggagtagcaggaggagcactgccagagcactgcaaaatgacctccagcaggccacaaatgtgcatgtgtctgctcaaacggtcagaaacagactccatgagggtggtatgaaggcccgacgtccacaggtgggggttgtgcttacagcccaacaccgtgcaggacgtttttcatttgccagagaacaccaagattggcaaattcgccactggcgccctgtgctcttcacagatgaaagcaggttcaaactgagcacatgtgacagacgtgacagtctggagacgccgtggagaatgttctgctgcctgcaacatcctccagcatgaccggtttggcggagggtcagttatggtgtggggtggcatttctttggggggccgcacagccctccatgtgctcgccagaggtagcctgactgccattaggtaccgagatgagatcctcagaccccttgtgagaccatatgctggtgcggttggccctgggttcctcctaatgcaagacctcatgtggctggagtgtgtcagcagttcctgcaagaggaaggcattgctgctatggattggcctgcccgttccccagacctgaatccaattgagcacatctgggacatcatgtctcgctctatccaccacagactgtccaggagttggcggatgctttagtccaggtctgggaggagatccctcaggagaccatccgccacctcatcaggagcatgcccaggcgttgtagggaggccacacacactactgagcctcattttgacttgttttaaggacatgacatcaaagttggatcagcctgtagtgtggttttccactttaattttgagtgtgactccaaatccagacctccatgggttgatacatttgatttccattgctaATTTTTGTGGGATTTTGTTGTcaacacattcaactatgtaaagaaaaaagtatttaataagaatatttcattcattcagatctaggatgtgtttttttagtgttccctttatttttttgagcagtgtagttgaAGATCAATGTTTCATGCTTGGAACAGTTATCTCTTGCGCACTGGAAGGTGTATAATTTCATGCGTGTATAATTAGTTATGTGTCATGTAACTTTTCTGGTTTAATTATTTCCAGCCACATTAACTATAATCAAATACTGTTATCCTACTGTTTAAGGTACCAATCTTGCCTTAAAAGTGATTCACTACTGCCTAATATTTGTCTCAGGATTTCAAATGGACCAATAAGTTTATCTGAATAATGAAAGATATCAATTACTCCAGTATTCAATGTTTTACTGCAAGATGATTGTTCTAGTGACCTCTATGGTTAGTCACAGTGATGTAGATGTTTTTCACAACAATTTAAAACTTGAAGCAATGATGGTTAAATACACGTTCTATTACTTTTGAAAGGATTTACATATTCAACAGTTAAATGAAGAATTCTATGTATTTATTTACATAGTTGGTAAGTTATGGCAAATGTGTTGAATGGAAACGATAGATTGTGCACAGTCCGTTCATATTACATATCAATCTATGATCTCTTATTTGCATAGTTGGGTGGAAAAAAATCAGTAAAATGCTGTGATTAACATGtttaatgtttgtttgttttttaaatacaaaattTTAAAAtgtgaaaaaaaaaatgattgaaaGGGATCAAAGGATATGTGac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567371.2 False 1245 mRNA 0.44 5 16962997 16965857
TU18429 True 2909 TUCP 0.40 5 16963057 16967790

Neighbor

gene id symbol gene type direction distance location
LOC110492686 LOC106573907 coding upstream 27113 16933335 ~ 16935884 (+)
LOC110492606 LOC106573909 coding upstream 42052 16916482 ~ 16920945 (+)
ddx49 ddx49 coding upstream 77363 16875696 ~ 16885634 (+)
LOC100135798 LOC100135798 coding upstream 135458 16826020 ~ 16827539 (+)
LOC118941434 NA coding upstream 211543 16730401 ~ 16751454 (+)
LOC110493012 NA coding downstream 11010 16976867 ~ 16980827 (+)
LOC110493316 LOC106573897 coding downstream 16652 16982509 ~ 17136370 (+)
LOC110493709 LOC106573901 coding downstream 278496 17244353 ~ 17256260 (+)
klhl26 LOC106573902 coding downstream 298096 17263953 ~ 17272050 (+)
LOC110494078 LOC106573895 coding downstream 307743 17273600 ~ 17313926 (+)
G15708 NA non-coding upstream 6537 16956190 ~ 16956460 (+)
G15706 rab3a non-coding upstream 10470 16952307 ~ 16952527 (+)
G15705 NA non-coding upstream 12026 16950385 ~ 16950971 (+)
G15702 NA non-coding upstream 17403 16944649 ~ 16945594 (+)
G15701 NA non-coding upstream 24690 16937536 ~ 16938307 (+)
G15717 NA non-coding downstream 4048 16969905 ~ 16970223 (+)
G15743 NA non-coding downstream 7284 16973141 ~ 16973368 (+)
G15891 NA non-coding downstream 274534 17240391 ~ 17240617 (+)
G15865 NA non-coding downstream 291571 17257428 ~ 17257827 (+)
LOC118941201 NA other upstream 382115 16578956 ~ 16592967 (+)
LOC110490510 LOC106573976 other upstream 1247315 15694810 ~ 15716774 (+)
sass6 sass6 other upstream 1495009 15447458 ~ 15468011 (+)
G13639 NA other upstream 2000994 14961554 ~ 14962003 (+)
LOC110495874 LOC106573877 other downstream 688350 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 1010107 17975918 ~ 17991176 (+)
G17420 NA other downstream 1916866 18882723 ~ 18956208 (+)
G18481 NA other downstream 2598992 19564849 ~ 19565221 (+)
LOC110502506 LOC106573550 other downstream 2602928 19568684 ~ 19575028 (+)

Expression


Co-expression Network