LOC110493012


Basic Information

Item Value
gene id LOC110493012
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16976867 ~ 16980827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567385.2
GTAATAATGTGGACGTGTTGTTGAGTTGAGTGTCTTTACCTCTAGGGCAACATGGCAGGTGTAATGGGTGTCACTATATTTATATCATTTGTTTCGGTAGCCGTCGCTCTTGGGTCCTCTGGAGCCCTATCATCAACCTTGACAGTGACTCCAATGAAGGCAACCACCAGGAATACCCCAACATTGTCTGTCACCATCCCCACAGTGGCCCCTGCCATGCCAACCAGTAGGACAAGTTCATCAGTCAGTGAAGCACCTAATACAGATCCTACTGGTGACACTAGAGTCCCAATGGAATCATCCCCTTCATCACCTGCAACTGAGCCTTCCCAATACTCTCAGCCACTGACTCCATCACAATCATCCAATGGCAGCACCACCACACAAACCTCTACAGGTTTTACAGCTGACACTACTATGAATCAGACCCTAACTGGAATAGTTGGTCATGACTCAACATCCTCAATCTTCTCATCAACATTGTCGCCAAGCTCTGATTTTACGACAGGGAACATGAGCTCAAGCACAGCCTTAGAAAGTGATGGGAGACATGTCTTATCAAGGAGTCCGGGCCTCGTAGCAGTCCTCTGCATATTCTGCATCTGTCTGGGTCTTCTGCTGGCTGTTGGAATTGCAAAGCTCATTACTCCCAGAGGTTCAACATTTCAGAGGCTTGAAGATGTGCCATTGGGCAAAATAAATGAAGAGTCTCCATTTGCCCGTTACCCTGAAAAACAATTCTGAAAGAAAACACATCATGAGAGAAGGTATTCTATTTGGGGTTCAGACAACGTTGTTCATGAGGACGTGTCACCCACCATCATGTTTATGttcctgtttttgtttgtttattttgtcTGGCTGCTGGAAAGTGACGTGTGTTTGAAGGAAGTCAGTATAGGCACTAAAAGCAATCCTGTGATGTGGTAAAGAATATCTCCTCCCAGGTTGGTCAGCAGCATACTGAAGTCGATCGTTGGTACTGTTCATTCACAGGTGGATGGATGCATCAAGGAACTGAATACAGAAGATGCACAGACAATGTCTGCGTTTACACaggtagcccaattctgatcttttgccaaaTTTTTAGCGAAAGATCTGATTTGTAAAAATACAAATTATTGGCACAatatcagaattggtctgccttTATAAACACAGCTAATGTGTCAGGTATCACTAGAAATAAAGCTATTAAAAAAGCTATAATAAAGCCAAATTCTCTGTTTCTTGAAAAGACTATGAGAAACAGGCCTAATTTTTGTATgggttgaaataaataaatg
>XM_021567397.2
GTAATAATGTGGACGTGTTGTTGAGTTGAGTGTCTTTACCTCTAGGGCAACATGGCAGGTGTAATGGGTGTCACTATATTTATATCATTTGTTTCGGTAGCCGTCGCTCTTGGGTCCTCTGGAGCCCTATCATCAACCTTGACAGTGACTCCAATGAAGGCAACCACCAGGAATACCCCAACATTGTCTGTCACCATCCCCACAGTGGCCCCTGCCATGCCAACCAGTAGGACAAGTTCATCAGTCAGTGAAGCACCTAATACAGATCCTACTGGTGACACTAGAGTCCCAATGGAATCATCCCCTTCATCACCTGCAACTGAGCCTTCCCAATACTCTCAGCCACTGACTCCATCACAATCATCCAATGGCAGCACCACCACACAAACCTCTACAGGTTTTACAGCTGACACTACTATGAATCAGACCCTAACTGGAATAGTTGGTCATGACTCAACATCCTCAATCTTCTCATCAACATTGTCGCCAAGCTCTGATTTTACGACAGGGAACATGAGCTCAAGCACAGCCTTAGAAAGTGATGGGAGACATGTCTTATCAAGGAGTCCGGGCCTCGTAGCAGTCCTCTGCATATTCTGCATCTGTCTGGGTCTTCTGCTGGCTGTTGGAATTGCAAAGCTCATTACTCCCAGAGGTTCAACATTTCAGAGGCTTGAAGATGTGCCATTGGGCAAAATAAATGAAGAGTCTCCATTTGCCCGTTACCCTGAAAAACAATTCTGAAAGAAAACACATCATGAGAGAAGGTGGATGGATGCATCAAGGAACTGAATACAGAAGATGCACAGACAATGTCTGCGTTTACACaggtagcccaattctgatcttttgccaaaTTTTTAGCGAAAGATCTGATTTGTAAAAATACAAATTATTGGCACAatatcagaattggtctgccttTATAAACACAGCTAATGTGTCAGGTATCACTAGAAATAAAGCTATTAAAAAAGCTATAATAAAGCCAAATTCTCTGTTTCTTGAAAAGACTATGAGAAACAGGCCTAATTTTTGTATgggttgaaataaataaatg

Function

NR:

description
cell wall protein RBR3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567385.2 False 1289 mRNA 0.43 4 16976867 16980827
XM_021567397.2 True 1060 mRNA 0.43 5 16976867 16980827

Neighbor

gene id symbol gene type direction distance location
LOC110492876 LOC106613263 coding upstream 11010 16962997 ~ 16967790 (+)
LOC110492686 LOC106573907 coding upstream 40983 16933335 ~ 16935884 (+)
LOC110492606 LOC106573909 coding upstream 55922 16916482 ~ 16920945 (+)
ddx49 ddx49 coding upstream 91233 16875696 ~ 16885634 (+)
LOC100135798 LOC100135798 coding upstream 149328 16826020 ~ 16827539 (+)
LOC110493316 LOC106573897 coding downstream 1682 16982509 ~ 17136370 (+)
LOC110493709 LOC106573901 coding downstream 263526 17244353 ~ 17256260 (+)
klhl26 LOC106573902 coding downstream 283126 17263953 ~ 17272050 (+)
LOC110494078 LOC106573895 coding downstream 292773 17273600 ~ 17313926 (+)
smim7 LOC106573893 coding downstream 363555 17344382 ~ 17347870 (+)
G15743 NA non-coding upstream 3499 16973141 ~ 16973368 (+)
G15717 NA non-coding upstream 6644 16969905 ~ 16970223 (+)
G15708 NA non-coding upstream 20407 16956190 ~ 16956460 (+)
G15706 rab3a non-coding upstream 24340 16952307 ~ 16952527 (+)
G15705 NA non-coding upstream 25896 16950385 ~ 16950971 (+)
G15891 NA non-coding downstream 259564 17240391 ~ 17240617 (+)
G15865 NA non-coding downstream 276601 17257428 ~ 17257827 (+)
G15928 NA non-coding downstream 333739 17314566 ~ 17314970 (+)
LOC118941201 NA other upstream 395985 16578956 ~ 16592967 (+)
LOC110490510 LOC106573976 other upstream 1261185 15694810 ~ 15716774 (+)
sass6 sass6 other upstream 1508879 15447458 ~ 15468011 (+)
LOC110495874 LOC106573877 other downstream 673380 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 995137 17975918 ~ 17991176 (+)
G17420 NA other downstream 1901896 18882723 ~ 18956208 (+)
G18481 NA other downstream 2584022 19564849 ~ 19565221 (+)
LOC110502506 LOC106573550 other downstream 2587958 19568684 ~ 19575028 (+)

Expression


Co-expression Network