comp (LOC106573894)


Basic Information

Item Value
gene id comp
gene name LOC106573894
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17314484 ~ 17326759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568957.2
ccaatcagaggcagctgtttattgttgtctctgattggggatcatatttaggaagccatttccccattggtattcgtgggatcttgtctacatttaATCAAAGTTGAGAGGACTCTGTCCGAAAGCACCATGATTTTGGGCCAGTGGGCTTCTGTGTTACGTGGACATTCCAAAGTGACGGGTTCCAGAGGACCTCCTGGGCGGAGGTGATGTCACTCTAGGAGAGATGTATAAAAGACatgcaggagaggagacagatcccactctctctgactctccaaACCCTGCTGCAGGAGCCTTCCCTGGTCCTACTTGAAGACGGGGCAGAATTTGGATAAACGACCTGGTTGAACCACACCAGACTTCACACAGTGGCTCCAGACTTCACACACCTTTACTTGTCAGTTGCCGTAGAGAAGTCTAAGGGAAAATAAGAACATGCTGTGGATCCTGGTGTTGGTGATTTCTCTCAGTGTGAGCAGTGAGCTAGTAGCTGGTCAGAGAGATGGAGAAATCATCAATCAGATCAAGGGAACAAATCAAGCTCTGGCTGAGATCAAAGAACTGCTGAAACAACAGATCCAAGAGATTGTGTTCCTGaagaacacagtgatggagtgTGAAGCCTGTGGCATGCAAGGTCCCCCTCGCCCCTCCTGTGACCCTAACCCCTGCCACCCGGGGGTAAAGTGCATTGAAACAGCTGGCGGCATCAAGTGTGGCCCCTGCCCTGAGGGCATGGTGGGCAACAGTACCCGATGCATGGATGTGGACGAGtgtgtggtgaAGCCTTGCCACATGGGTGTGCGCTGCATAAACACGTCCCCAGGTTTCCGCTGTGGCCCCTGTCCAACTGGCTACACTGGCCCTCAGGTGCAGGGAGTAAGCCTCTCCTATGCCACTAAAAACAAACAGGTCTGCAAGGACATCAATGAGTGCGAAGGACCCAAGAATGGAGGTTGTGTGGAAAATTCCAATTGTGCAAACACACCTGGCTCGTTTAGGTGTGGCCTCTGTAAGGCAGGCTATGTTGGGGATCAGCGCAAGGGCTGTAAGCCTGAGAGAGCATGTGGTAATGGCCAGCCCAACCCCTGCCATGCCAGCGGAGAGTGTATTGTCCAACGAGATGGGAAAATAGAGTGTCAGTGTGGGGTGGGATGGGCTGGCAATGGCTACTTCTGCGGATCTGATATTGACATTGATGGCTTCCCTGATGAGAAACAGGAATGTGCCGAGAGGAACTGTGCCAAGGATAACTGTCAAACGGTACCCAACTCTGGCCAAGAGGACGCAGACAAGGATGGTATAGGAGACGCCTGCGATGAAGATGCAGATGGGGATGGAATCTTAAATACACAGGACAACTGTGTGCTGGTACCAAACGTCAACCAAAGAAATGTGGACGAAGACGACTTTGGAGACGCCTGTGACAACTGCCGTATGATCAAAAACAACGACCAGAAAGACACTGATATTGATAGACTGGGTGACGAATGTGACGAAGACATTGATGGCGACGGAATCCCCAATAACCTGGACAACTGCAAAAGGGTTCCCAATACTGACCAGAAGGATCGGGATGGGGACAAAGTCGGAGATGCCTGTGACAGTTGCCCTTACGTTTCCAACCCTGACCAGTTGGATATGGACAACGACTTGATCGGAGACCCTTGTGACACCAATAAGGACAGTGATGGTGACGGTCACCAGGACTCTCAGGACAACTGCCCTGCGGTCATCAACAGCGCCCAGCTGGACACGGACAAGGATGGCCTGGGGGACGAGTGTGACAACGACGATGACAATGATGGTATTCCTGACCTTCTGCCCCCGGGACCGGACAACTGTCGCCTCATTCCCAACCCTCTGCAGGAGGACTCTGACGGTGATGGGGTTGGGAACCTGTGCGAGAACGACTTTGACAACGACACCATCATCGACAGCATCGATGTGTGCCCAGAGAACGCTGAGGTTACTCTCACAGACTTCAGGGCCTACCAGACAGTGGTGCTGGACCCGGAGGGAGACGCACAGATAGACCCTAACTGGGTGGTGCTCGATCAGGGTAGAGAGATCGTCCAAACTATGAACAGTGACCCTGGACTGGCTGTTGGTTACACGGCTTTCAACGGCGTTGACTTCGAAGGGACGTTCCATGTGAATACGGTAACAGACGACGACTATGCAGGCTTCATATTTGGCTACCAGGACTCTTCCTCCTTCTACGTAGTGATGTGGAAACAAGTTGAGCAGATCTACTGGCAGGCCAATCCGTTCCGAGCTGTGGCAGAACCAGGGATACAACTGAAGGCTGTAAAGTCCAACACGGGACCAGGGGAAAATCTACGTAACTCCCTGTGGCACACCGGAGACACCAGTGACCAGGTGAAGCTGCTGTGGAAAGATGCCCGCAACGTGGGCTGGAAGGACAAGACCTCCTACCGCTGGTTCTTGCAACACAGGCCCCAAGATGGATACATCAGGGTGCGTTTCTATGAGGGTCCTCAGCTAGTGGCAGACACAGGCATCATCATAGACACCACCATGAGAGGAGGCAGACTGGGCGTCTTTTGCTTCTCTCAGGAGAACATCATCTGGGCTAACCTACGCTACCGCTGCAATGATACAATCCCTGGGGACTTCGATACATACCAAGCCCAACAGGTCCAGCTGCAGTTCTAACAGGGCACGCACATCTGCCCAAATGAAGACTGAGAAGACAATGCATCTACAACCCCAACATTCCGGAACACGTCTCCCAGATGAACAGTACAGTGTTGCTTCTTAAATGGCACCCAAtctcctatatagtgtactacttttgactaaagactatatagggaatagggtgccatttcagacgtaCCCAGTGAGATTTCACTCAGCAAAATGGCGGCTGACATATTGATCACCACCAGCAATGACAGGATTTTCCTGTCTTACATTCGCTCCACAATAATTCCAGTTCTCAGGGGACTTTTGTCTACCATTACTCTGTCACCAATATATAaatgtgaaaatgtattttttttttataatcaggGTGTTGCCAATAAATGTGTTACATTGTGAGGGGACCCTATACAAATAAAAACTTTTGATATGCATTA
>XR_002469236.2
ccaatcagaggcagctgtttattgttgtctctgattggggatcatatttaggaagccatttccccattggtattcgtgggatcttgtctacatttaATCAAAGTTGAGAGGACTCTGTCCGAAAGCACCATGATTTTGGGCCAGTGGGCTTCTGTGTTACGTGGACATTCCAAAGTGACGGGTTCCAGAGGACCTCCTGGGCGGAGGTGATGTCACTCTAGGAGAGATGTATAAAAGACatgcaggagaggagacagatcccactctctctgactctccaaACCCTGCTGCAGGAGCCTTCCCTGGTCCTACTTGAAGACGGGGCAGAATTTGGATAAACGACCTGGTTGAACCACACCAGACTTCACACAGTGGCTCCAGACTTCACACACCTTTACTTGTCAGTTGCCGTAGAGAAGTCTAAGGGAAAATAAGAACATGCTGTGGATCCTGGTGTTGGTGATTTCTCTCAGTGTGAGCAGTGAGCTAGTAGCTGGTCAGAGAGATGGAGAAATCATCAATCAGATCAAGGGAACAAATCAAGCTCTGGCTGAGATCAAAGAACTGCTGAAACAACAGATCCAAGAGATTGTGTTCCTGaagaacacagtgatggagtgTGAAGCCTGTGGCATGCAAGGTCCCCCTCGCCCCTCCTGTGACCCTAACCCCTGCCACCCGGGGGTAAAGTGCATTGAAACAGCTGGCGGCATCAAGTGTGGCCCCTGCCCTGAGGGCATGGTGGGCAACAGTACCCGATGCATGGATGTGGACGAGtgtgtggtgaAGCCTTGCCACATGGGTGTGCGCTGCATAAACACGTCCCCAGGTTTCCGCTGTGGCCCCTGTCCAACTGGCTACACTGGCCCTCAGGTGCAGGGAGTAAGCCTCTCCTATGCCACTAAAAACAAACAGGTCTGCAAGGACATCAATGAGTGCGAAGGACCCAAGAATGGAGGTTGTGTGGAAAATTCCAATTGTGCAAACACACCTGGCTCGTTTAGGTGTGGCCTCTGTAAGGCAGGCTATGTTGGGGATCAGCGCAAGGGCTGTAAGCCTGAGAGAGCATGTGGTAATGGCCAGCCCAACCCCTGCCATGCCAGCGGAGAGTGTATTGTCCAACGAGATGGGAAAATAGAGTGTCAGTGTGGGGTGGGATGGGCTGGCAATGGCTACTTCTGCGGATCTGATATTGACATTGATGGCTTCCCTGATGAGAAACAGGAATGTGCCGAGAGGAACTGTGCCAAGGATAACTGTCAAACGGTACCCAACTCTGGCCAAGAGGACGCAGACAAGGATGGTATAGGAGACGCCTGCGATGAAGATGCAGATGGGGATGGAATCTTAAATACACAGGACAACTGTGTGCTGGTACCAAACGTCAACCAAAGAAATGTGGACGAAGACGACTTTGGAGACGCCTGTGACAACTGCCGTATGATCAAAAACAACGACCAGAAAGACACTGATATTGATAGACTGGGTGACGAATGTGACGAAGACATTGATGGCGACGGAATCCCCAATAACCTGGACAACTGCAAAAGGGTTCCCAATACTGACCAGAAGGATCGGGATGGGGACAAAGTCGGAGATGCCTGTGACAGTTGCCCTTACGTTTCCAACCCTGACCAGTTGGATATGGACAACGACTTGATCGGAGACCCTTGTGACACCAATAAGGACAGTGATGGTGACGGTCACCAGGACTCTCAGGACAACTGCCCTGCGGTCATCAACAGCGCCCAGCTGGACACGGACAAGGATGGCCTGGGGGACGAGTGTGACAACGACGATGACAATGATGGTATTCCTGACCTTCTGCCCCCGGGACCGGACAACTGTCGCCTCATTCCCAACCCTCTGCAGGAGGACTCTGACGGTGATGGGGTTGGGAACCTGTGCGAGAACGACTTTGACAACGACACCATCATCGACAGCATCGATGTGTGCCCAGAGAACGCTGAGGTTACTCTCACAGACTTCAGGGCCTACCAGACAGTGGTGCTGGACCCGGAGGGAGACGCACAGATAGACCCTAACTGGGTGGTGCTCGATCAGGGTAGAGAGATCGTCCAAACTATGAACAGTGACCCTGGACTGGCTGTTGGTTACACGGCTTTCAACGGCGTTGACTTCGAAGGGACGTTCCATGTGAATACGGTAACAGACGACGACTATGCAGGCTTCATATTTGGCTACCAGGACTCTTCCTCCTTCTACGTAGTGATGTGGAAACAAGTTGAGCAGATCTACTGGCAGGCCAATCCGTTCCGAGCTGTGGCAGAACCAGGGATACAACTGAAGGCTGTAAAGTCCAACACGGGACCAGGGGAAAATCTACGTAACTCCCTGTGGCACACCGGAGACACCAGTGACCAGGTGAAGCTGCTGTGGAAAGATGCCCGCAACGTGGGCTGGAAGGACAAGACCTCCTACCGCTGGTTCTTGCAACACAGGCCCCAAGATGGATACATCAGGGTGCGTTTCTATGAGGGTCCTCAGCTAGTGGCAGACACAGGCATCATCATAGACACCACCATGAGAGGAGGCAGACTGGGCGTCTTTTGCTTCTCTCAGGAGAACATCATCTGGGCTAACCTACGCTACCGCTGCAATGATACAATCCCTGGGGACTTCGATACATACCAAGCCCAACAGGTCCAGCTGCAGTTCTAACAGGGCACGCACATCTGCCCAAATGAAGACTGAGAAGACAATGCATCTACAACCCCAACATTCCGGAACACGTCTCCCAGATGAACAGTACAGTggtgccatttcagacgtaCCCAGTGAGATTTCACTCAGCAAAATGGCGGCTGACATATTGATCACCACCAGCAATGACAGGATTTTCCTGTCTTACATTCGCTCCACAATAATTCCAGTTCTCAGGGGACTTTTGTCTACCATTACTCTGTCACCAATATATAaatgtgaaaatgtattttttttttataatcaggGTGTTGCCAATAAATGTGTTACATTGTGAGGGGACCCTATACAAATAAAAACTTTTGATATGCATTA

Function

NR:

description
thrombospondin-4-like

GO: NA

KEGG:

id description
K04659 THBS2S; thrombospondin 2/3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568957.2 False 3110 mRNA 0.51 19 17314484 17326759
XR_002469236.2 True 3039 mRNA 0.51 20 17314484 17326759

Neighbor

gene id symbol gene type direction distance location
LOC110493215 LOC106573896 coding downstream 93527 17173402 ~ 17220957 (-)
LOC110493506 LOC106573900 coding downstream 141277 17140522 ~ 17173207 (-)
LOC110493631 LOC106573903 coding downstream 174092 17137016 ~ 17140392 (-)
rab3ab LOC106573906 coding downstream 353407 16943579 ~ 16961077 (-)
LOC110492528 LOC106573908 coding downstream 398048 16909202 ~ 16916436 (-)
LOC110494221 LOC100194656 coding upstream 3168 17329927 ~ 17343550 (-)
LOC118942066 NA coding upstream 36140 17362899 ~ 17365492 (-)
LOC110531963 LOC106573889 coding upstream 64137 17390896 ~ 17392469 (-)
LOC118942412 NA coding upstream 101518 17428277 ~ 17436513 (-)
LOC110495007 NA coding upstream 189908 17516667 ~ 17518593 (-)
G16194 NA non-coding downstream 586 17311287 ~ 17313898 (-)
G16193 NA non-coding downstream 5700 17308575 ~ 17308784 (-)
G16192 NA non-coding downstream 6497 17307780 ~ 17307987 (-)
G16188 NA non-coding downstream 10143 17303905 ~ 17304341 (-)
G16186 NA non-coding downstream 12106 17302118 ~ 17302378 (-)
G16207 NA non-coding upstream 8440 17335199 ~ 17338878 (-)
G16208 NA non-coding upstream 17352 17344111 ~ 17344377 (-)
G16209 LOC106573893 non-coding upstream 17649 17344408 ~ 17347869 (-)
G16216 LOC106573893 non-coding upstream 27643 17354402 ~ 17356978 (-)
G16218 NA non-coding upstream 33757 17360516 ~ 17360773 (-)
G16161 LOC106573901 other downstream 57243 17255236 ~ 17257241 (-)
G16100 LOC106573897 other downstream 178127 17131420 ~ 17136357 (-)
LOC110492105 homer3 other downstream 442556 16838135 ~ 16871992 (-)
G15470 NA other downstream 783008 16531047 ~ 16531476 (-)
LOC110531395 LOC106613616 other downstream 1098188 16181514 ~ 16295527 (-)
LOC110497564 LOC106573866 other upstream 763121 18089520 ~ 18098678 (-)
LOC110497762 LOC106573859 other upstream 1063364 18390123 ~ 18450517 (-)
mydgf LOC106573827 other upstream 1550118 18876547 ~ 18888907 (-)
LOC110502937 ccl25 other upstream 2303734 19630376 ~ 19633058 (-)
G20266 NA other upstream 3472361 20799120 ~ 20800008 (-)

Expression


Co-expression Network