smim7 (LOC106573893)


Basic Information

Item Value
gene id smim7
gene name LOC106573893
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17344382 ~ 17347870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569453.2
ctggtctaggtcttaaatgaaagaagaaaaaaaacctaggccctccatggaatgagtttgacacccctgcccaaCGTGATTGATCATATTTCTAATGTGGCTTTCTCTTCAAAACGTTTTCTCTACTGAACATAACCCAGGATTTCCCTTCAGCCTTTTGACACTATTTTGATGACGTTTACGGAAGTTATAGCGCCTCTGATGTGGACAAAATGATCGGGGATCTCTTGATATTCGGGACCTTACTCATGAATGCTGGTGCTGTGTTAAACTTCAAACTaaagagaaaggagacacATGGAGGATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGGGAGTTCCTCCTGAGTCTACGTTACTTCCGGATCTTCATTGCCTTATGGAACATCTTCATGATGTTTTGCATGATTCTATTGTTTGGATCATGATCAACTTCCTTGTTGGATTGGGGACCCCTGCTGAAAAATTAAACAAATATTAAATATTTTTCGAGTTGATACTTTGATGGGTTGCTCTTGTGTCAGATCCTGTGACCATTCTGTGCATTTACCTTGTATTAATATATCTCAATGTCTTGCCTGTAATTTTCAGTAAGCAGATTATTCTGCACAATAACACTTACTACTACATGTATAAGTTAGTTAAAACACATTTGTACATGTTATATTTGGACCTCCATGTTTATTCAACTGTGAATATACGAAACATTTGACTCTTGGCTGTTCTCTTCATAATTTTCTGTTCCTTTCAGGCTTTTACTATCTTATTTGGGTTGCTGACCTGTTATAGTCCTCATTTTCTTCTAAAACTTGTGAATACAATGAGAAAATATGTAAATCTCCAACCATTTTagacatgtttgatgtgtttcttACATAGGCCTTCTGATGTTACCAGCAGTCAGACTTCAATTCATCGTTGTGTACTTTTGTCACATCTATAACCTATTTCTGTATAATAAACCTTTACTCTGAAATGCAC
>TU18648
TAGCGCCTCTGATGTGGACAAAATGATCGGGGATCTCTTGATATTCGGGACCTTACTCATGAATGCTGGTGCTGTGTTAAACTTCAAACTaaagagaaaggagacacATGGAGGATTTGGAGATGAACCTCGTGGACCAACTACAGGTGACAACATCAGGGAGTTCCTCCTGAGTCTACGTTACTTCCGGATCTTCATTGCCTTATGGAACATCTTCATGATGTTTTGCATGATTCTATTGTTTGGATCATGATCAACTTCCTTGTTGGATTGGGGACCCCTGCTGAAAAATTAAACAAATATTAAATATTTTTCGAGTTGATACTTTGATGGGTTGCTCTTGTGTCAGATCCTGTGACCATTCTGTGCATTTACCTTGTATTAATATATCTCAATGTCTTGCCTGTAATTTTCAGTAAGCAGATTATTCTGCACAATAACACTTACTACTACATGTATAAGTTAGTTAAAACACATTTGTACATGTTATATTTGGACCTCCATGTTTATTCAACTGTGAATATACGAAACATTTGACTCTTGGCTGTTCTCTTCATAATTTTCTGTTCCTTTCAGGCTTTTACTATCTTATTTGGGTTGCTGACCTGTTATAGTCCTCATTTTCTTCTAAAACTTGTGAATACAATGAGAAAATATGTAAATCTCCAACCATTTTagacatgtttgatgtgtttcttACATAGGCCTTCTGATGTTACCAGCAGTCAGACTTCAATTCATCGTTGTGTACTTTTGTCACATCTATAACCTATTTCTGTATAATAAACCTTTACTCTGAAATGCA

Function

NR:

description
small integral membrane protein 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569453.2 False 996 mRNA 0.37 5 17344382 17347870
TU18648 True 805 lncRNA 0.43 5 17344572 17347869

Neighbor

gene id symbol gene type direction distance location
LOC110494078 LOC106573895 coding upstream 30456 17273600 ~ 17313926 (+)
klhl26 LOC106573902 coding upstream 72332 17263953 ~ 17272050 (+)
LOC110493709 LOC106573901 coding upstream 88122 17244353 ~ 17256260 (+)
LOC110493316 LOC106573897 coding upstream 208017 16982509 ~ 17136370 (+)
LOC110493012 NA coding upstream 363555 16976867 ~ 16980827 (+)
LOC110494277 LOC106573893 coding downstream 578 17348448 ~ 17356979 (+)
slc35e1 LOC106573890 coding downstream 19179 17367049 ~ 17384408 (+)
LOC110494533 LOC106573888 coding downstream 72526 17420396 ~ 17436449 (+)
pex11g pex11g coding downstream 88919 17436789 ~ 17439767 (+)
si:ch73-40i7.5 apba1 coding downstream 94460 17442330 ~ 17456277 (+)
G15928 NA non-coding upstream 29412 17314566 ~ 17314970 (+)
G15865 NA non-coding upstream 86555 17257428 ~ 17257827 (+)
G15891 NA non-coding upstream 103765 17240391 ~ 17240617 (+)
G15909 NA non-coding downstream 9831 17357701 ~ 17358053 (+)
G15942 NA non-coding downstream 11299 17359169 ~ 17360106 (+)
G15943 LOC106581475 non-coding downstream 13212 17361082 ~ 17361410 (+)
G15944 NA non-coding downstream 14341 17362211 ~ 17362428 (+)
LOC110492876 LOC106613263 other upstream 376592 16962997 ~ 16967790 (+)
LOC110492606 LOC106573909 other upstream 423973 16916482 ~ 16920945 (+)
LOC118941201 NA other upstream 763500 16578956 ~ 16592967 (+)
LOC110490510 LOC106573976 other upstream 1628700 15694810 ~ 15716774 (+)
sass6 sass6 other upstream 1876394 15447458 ~ 15468011 (+)
LOC110495874 LOC106573877 other downstream 306337 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 628094 17975918 ~ 17991176 (+)
G17420 NA other downstream 1534853 18882723 ~ 18956208 (+)
G18481 NA other downstream 2216979 19564849 ~ 19565221 (+)
LOC110502506 LOC106573550 other downstream 2220915 19568684 ~ 19575028 (+)

Expression


Co-expression Network