slc35e1 (LOC106573890)


Basic Information

Item Value
gene id slc35e1
gene name LOC106573890
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17367049 ~ 17384408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569587.2
TGCTCTCGAACCCGGTCTACGAGTATTTTCTCAACATTGTACATACTGCCGCATTCATGACAACTCGGAACTTTCCGACATGGAATCTCGTTGTATAAAGTTAATGTCCGAGTTTCTCCACTTGGAACTTATCAGAATCAACCAAAAGGAAGCTCTACAAAAAACGTACCGAAATGTTAACTCGGGGAATCCGAGTTTCCGATTTGTCTGGAACGCGGCATAGTAGCTTCTCCACGTCTCACACTGCTGGCCTTGCTGCCACACACTGCCGCCGGTGACTCCGAAGTGGAAGATGGCTGCGGTGGAGCGTCCCCCAGTCAAGGAAGGGGTCCGGATAGCTTTACTCTGTTTCTGTTGGTATACTGTTAGTTCGGGAGGCAACGTAGTTAACAAAATTATTCTAAATGGGTTCCCTTATCCTGTCACAGTTTCGCTTTTTCATATATTCTCAATCGTCGTCTTCCTTCCACCGTTGCTGCGAGCATGGGGAGTCCCCAAAACAGAAATACCAACTAGATACTTCAAATGGTATATTATCCCTTTAGCTTTTGGAAAATACTTCGCATCTGTGTCGGCCCACTTCAGTATATGGAAGGTACCGGTTTCCTACGCACACACTGTCAAAGCCACAATGCCAATATGGGTTGTGTTGTTATCAAGGATTATCATGAAGGAGAAGCAAACAACAAAAGTGTACGTATCTCTCATCCCCATCATCGGAGGAGTGCTTCTGGCCACGATGACAGAAATGTCCTTTGATGTATCTGGGTTAGTCAGTGCCCTGGCTGCCAcactctgcttctctctgcaAAACATCTTCTCCAAAAAGGTGCTGCGGGACACGAGGATCCACCACCTGAGACTTCTCAACATACTGGGCTTCAATGCTGTTTTCTTCATGGTGCCTACGTGGGTTCTGGTGGACCTCTCCTCATTCTTGGTTGAGGGGGATTTTACGGGCATGTCTGAATGGACAGGCACTTTTCTCCTCCTCCTGGTCAGCGGCTTCTGTAACTTTGCCCAGAATGTCATCGCCTTCAGTGTCCTCAACCTGATCAGCCCGCTGAGCTACGCCGTGGCCAACGCCACCAAGAGGATCATGGTCATCAGCATATCGCTCCTAATGCTACGCAACCCCGTCAGCTCCACCAACATCATGGGCATGATGACGGCAATAGTGGGCGTCTTCCTGTACAACAAGGCGAAATATGACGCAAACAAGGAAGCTAAGAAAAAGCTGCTGCCTTCCTCCAAGCAGGACATGATGTCCTTTGACAATTTGGGACTGGACAAGACGCAGCCCAATGGTTCAGTGCCTTTCTCCCAAGGCTCAGACATTCAGTATGGTCGAAGCAACGTGTTGACCGACCACTTCCAGTACAGCCGGCAGGCCTACACAATGAACTATGGTGCCTCCAACCACCAGTATGTGGTTTAGGCTGGTGGATTTCTCCATGGACATATTGTATTTGTTTCCAGCAGAATTCTTAAACCACCTCTAACAAAAAGAAAGGCAAGTGCTGTCGTATTGGCGGAGAGGGAAGTATCAGTCATGAGTTGGCCAGCGTTTTGGCCAGCGTTTTGGCTAGCGTTTTGGCCAGCGTTTTGGCCAGCGTTTTGGCCAGCGTTTTGGCCAGCGTTTTGGCTAGCGTTTTGGCCAGCGTTTTGGCTAGCGTTTTGTCCCAAACATGTTCTTTAACATATTCTCTTCACCTccttgtgttgtatttattttgaTATGAACACTTAAAAAGGGATAGTTAAGtcaaaatcaaagtttgtcagatgttttcagaccCCAAATGTTGTCCACTTCCAACCTTGTCCTTCGTCAACTGTTGCAGATAGTGTCAATCTTTCCAGTTAATTTTGGATTGATGCATACCACTGGATCTACAAAACAGATGGCTTGGAACATGGACTCGTTTGACAAATTTAGATTTTGTAGTGAACtatctgtttgttttttgtttgctTGCTAAGGAAGAGATGTTCTTATTCTTTTTTTCTGTGGGAGTTCGCTAACATGGGAATAATTGTTACTGTAGCTACAATAGCGTAGTTCAAAAATAAATAGTTCACAACTTTGATATACAGTTAAAGACCATGAAATGTTTACCATGCCCATAATGCCTTGTGAATCAGGCTTGTCCTCAAGGTTACATTGACCCCAATTTTATCACAGAAGGCATGAACATTTTACATAAATGTTTTGCAGAGATTGGCAACATTTGTCCTATACATGTAAAACCGTTTGCCCTTATGACATTTTCTGGTTTGTCTTTTACTAGTGATGGAGGAATGAAAATGTATATAATCGGTTGTAGGTACAGAAAGGTTCCTGGTTTGAATACCCAATCCGAAAAGGGGAAAAATATGTCTGTGTCCTTGAACAAGGCCCttgtcagccatagtagtacctCTGGAGGTTAATGTGAAACAACACATTTTACTGCTctatccagtgtatgtgacaaaaacatatattttttcattCATTTTGTTCCATATTTACATATCGGCCACTTAATCAATTTGTATCTGATCTAGTAATAGCTGTGTAATATGTCGGTAGAAGGGTCAGGATTGGCAGACTTACTGGATCAGGCTTAAGTGTCAGACTCCTCTTCTTTTGCCTGTTTGTCATTTTGTTCTTAATATTCACACTTACAATCATGTTCTGATTAAGGAGTAGTATTTCCCCCTGCATGCAAGTAATTTAGCCTACAGGGAACAATAGCTGTTTTTCAAAGCTGGTGTGACGCACCTGAACTGGTTATTTACTTTGCAAATCAATGAAAGATGTGACGGAGACTAACTAACTTGTGTGACACTCTAGCAAAATGTTATCCTTGTTGACTATAAAAGGAATATTCTTCTAGTCCAACTTTTTTATTTGAGTTTGCGTGTTTCAATTTGCTACAGCACATTCAAGCATTTTAAGTGGAGAATTTCTTTGCCGTTTCTTAACGGCAGGAAAGTTGGATCTAATCTGATTTTATTGCATGTTCAGCAACTGGCCGGCAACAAACTACATGCTGAGATTTTGAAAAAGCAATTTCGCTGTTTACCATAAATTCAAATAATGTATTTGAATATTCCCCTATGGTATATGATGTATAGTTATGGAAGACTGCACAGAGGATCCATGTGTATTTACACATTTAAGGAACTCTtgtgtgtgagcttgtgtggaaTTCTCAGGTAGTTCCAAGCTTATCATAGTCCATTTAGTGAAACTTCCATATCATTTAGTTCGGCAGGTTTGGTCTGTTTACGTAATGAAATTCATACTGGCGTGGTGATTAGGCTATGGGGATTTGAATACATTTGACGGTCACTTATGCCTGTTCTCTGCATGTCCTCATGAGTTTTGACTTGACTTTGTCCTATCATTGTCTTTTGAATCTTCTTTACAGAGAAAACAATTTGTAGAAATCTGTAATTGGataacaaatgttttatttgtggAAGGAATATCAAATGTTGGAGCCACAATTTGGATTCTACTAAATCATTTTTCTGTCACCTTTAACATAAGATGTTATGAAGAGCTGTGGTAAATCAGCTTGGATCCCACCTTATTATTTTGTTacttattttgtattattgtaTGTCATTCTGTTCAAATGTCTCACGGTCTCTTCTTAAATCTATGGTCGAGTTTGTCACATCCTTACGCAAGGTGCCAAATGGAAGGCGCTACCTGGCTCAAAGTGCATCACAAGGATTCTTTTTTTTACTCTAATTTTTTGACCCAGTAGCATGGAGTGATGAATTCTGATGTGCATTATGTATATGTTTAATTTAACGTAAAGCCTAATTTGTCTATACAGTAAGCTAATGGATAACACTTAGAACATGAGAATTTAGAGAAACTTTGTTAGTTCTGGGACGGTATTTGCTATGAGGTTATTTACTGGAATGTACATTTGGAATGTGGGGTTTGCTTTGTAAAAGTTGTATAAATGCAATTTTTTGTGTTTTAAATAATCTTGAACTGAATTTTTACTGAACCAATGTTTATAGATTTTTATTTATGGTGTCTAGGTACAGAAAAGTATACATAAGTGCAACCATGCACAGTGTTGTCTGCTTACGTTTAGTAAATACTATTTTTAAATGTCTAAAAAAATAAATGCATTGTGAAATGAATGTATGATTTAATTTTCTTGATAAAGGTGTGCTGTACATTGAA

Function

NR:

description
solute carrier family 35 member E1

GO: NA

KEGG:

id description
K15283 SLC35E1; solute carrier family 35, member E1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569587.2 True 4198 mRNA 0.41 6 17367049 17384408

Neighbor

gene id symbol gene type direction distance location
LOC110494277 LOC106573893 coding upstream 10070 17348448 ~ 17356979 (+)
smim7 LOC106573893 coding upstream 19179 17344382 ~ 17347870 (+)
LOC110494078 LOC106573895 coding upstream 53123 17273600 ~ 17313926 (+)
klhl26 LOC106573902 coding upstream 94999 17263953 ~ 17272050 (+)
LOC110493709 LOC106573901 coding upstream 110789 17244353 ~ 17256260 (+)
LOC110494533 LOC106573888 coding downstream 35988 17420396 ~ 17436449 (+)
pex11g pex11g coding downstream 52381 17436789 ~ 17439767 (+)
si:ch73-40i7.5 apba1 coding downstream 57922 17442330 ~ 17456277 (+)
zgc:172302 LOC106573884 coding downstream 83250 17467658 ~ 17516649 (+)
r3hdm4 r3hdm4 coding downstream 134176 17518584 ~ 17525429 (+)
G15946 NA non-coding upstream 1426 17365338 ~ 17365623 (+)
G15944 NA non-coding upstream 4621 17362211 ~ 17362428 (+)
G15943 LOC106581475 non-coding upstream 5639 17361082 ~ 17361410 (+)
G15942 NA non-coding upstream 6943 17359169 ~ 17360106 (+)
G15909 NA non-coding upstream 8996 17357701 ~ 17358053 (+)
G16259 NA non-coding downstream 56769 17441177 ~ 17441511 (+)
G16281 NA non-coding downstream 81774 17466182 ~ 17466653 (+)
G16294 NA non-coding downstream 99870 17484278 ~ 17504919 (+)
G16365 NA non-coding downstream 227856 17612264 ~ 17612604 (+)
G16368 NA non-coding downstream 231929 17616337 ~ 17616569 (+)
LOC110492876 LOC106613263 other upstream 399259 16962997 ~ 16967790 (+)
LOC110492606 LOC106573909 other upstream 446640 16916482 ~ 16920945 (+)
LOC118941201 NA other upstream 786167 16578956 ~ 16592967 (+)
LOC110490510 LOC106573976 other upstream 1651367 15694810 ~ 15716774 (+)
sass6 sass6 other upstream 1899061 15447458 ~ 15468011 (+)
LOC110495874 LOC106573877 other downstream 269799 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 591556 17975918 ~ 17991176 (+)
G17420 NA other downstream 1498315 18882723 ~ 18956208 (+)
G18481 NA other downstream 2180441 19564849 ~ 19565221 (+)
LOC110502506 LOC106573550 other downstream 2184377 19568684 ~ 19575028 (+)

Expression


Co-expression Network