LOC110531963 (LOC106573889)


Basic Information

Item Value
gene id LOC110531963
gene name LOC106573889
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17390896 ~ 17392469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110531963
TTGCTTAGTGAGCGTATAGGGCCGCCTGGCTCTGATATATCTATTAGGACCAGATTGCTGGGCGTCAAGAGCGCATTTCCAAGTTTTTCCACCCACGGGATATTTCAAAAGGTTGATGTCAATGTAGGCTATGGAACAACAGCAATCATGAAATAGGGACTTTACAAGAGAAAACACATTTGTCAATATCCTGCTTGGATTGTAATGGACTGAAGAAGTAAGTGGCATCTATCTAAAAGAAAGGAACAAATAACGCCCATTGGATAGCTTTCTTTTGGAACGGAAAACATGAACGACACAAGTAATTTCACTACACACACTGTGCCTTACAAGTCAGCTGCAGTCATGGCTTTACCTGTATTTATGTTTGCAGTTGGTGTCATTGGAAATATAATAGCGATAGCCGCTCTATCTGGATCTAAGCAAGGGCGCAAGTCGTCCGCCCTTAGTTTGCGGTTTGGCTATCACCGATCTTCTTGGGACTTGTCTGGCCAGCCCAATCACTATAGCCACTTACCTCGATAAAAATGTACTCCACGACCGTCATCTTTGTGAATTCCATTCATTTTTGTTGCTGTTCTTCGGAGTGGCAGGACTAAGTATTATATGCGCAATGTCTGCTGAGCGCTACCTCGCAATATGCTGCCCTTACACATACCAAAGATGGGGAATTGGCCCACATTTGGCGCGCAAGTGCTTGTTTTGCATTTATCTCAGCAACATTGTATTTTGTTGTCTTCCAGTGATGGGTATGACTGAAAGCATGAGCCAGCCCTCCAAAACCTGGTGCTTCATCAACTGGATGGCTCATGAGCCGTTGTCTGCAGCCTATTCGTTTTTATATGCAAGTGTGAGTTTTCTACTCATATTGATGACGATAGTCCTCAACTTTGCAGTTTGTGGCACTCTATTGATAATGCATCGCAGGAAAATCCAACGTCCAGTTACTAGAGGGAGCACACGGGCGCATTGGACAGCGCTTTCCTCCGGCGTGGAAGCCCAAATGATGACGGTGCTCGTGGTGACCTCGATGGTTGTTTTAGGTTGCTCAGCGCCGCTGGTGGTACGCGTATTTGCTAACCAGATATCACGGGAAGATAATTCCCATGCAGATTTGAAGGCTATACGGATTGCCGCCGTCAACGCCATCCTTGACCCTTGGATCTACATTTTGCTGAGAAGGACTCTGTTCAGTAAGATTCGGAGATTATCTAAACGGGTTTACAGTGGTCGACAAGGCAAATAACCCATGTTGCCAGTCAAATCCTCACAAAGGACTTTCCACTACCAAACAAACACccatgacttgcctagttaaataaaggttacatttaaaaaacgaAAGAATTCACATTCCTCTGAAGCACTGTACAGCAGCATCAACATCAATCAACTACCAGCCAGTCTCCCATTGCGCCCACATCACGCAGGGGGGACAAACATAACAACAAGTAGTTGTAACAAGTAgggctgcagcacc

Function

NR:

description
PREDICTED: prostaglandin E2 receptor EP4 subtype-like isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110531963 True 1480 mRNA 0.45 2 17390896 17392469

Neighbor

gene id symbol gene type direction distance location
LOC118942066 NA coding downstream 25404 17362899 ~ 17365492 (-)
LOC110494221 LOC100194656 coding downstream 47346 17329927 ~ 17343550 (-)
comp LOC106573894 coding downstream 64137 17314484 ~ 17326759 (-)
LOC110493215 LOC106573896 coding downstream 169939 17173402 ~ 17220957 (-)
LOC110493506 LOC106573900 coding downstream 217689 17140522 ~ 17173207 (-)
LOC118942412 NA coding upstream 35808 17428277 ~ 17436513 (-)
LOC110495007 NA coding upstream 124198 17516667 ~ 17518593 (-)
LOC110531970 LOC106573879 coding upstream 209243 17601712 ~ 17619924 (-)
LOC110495805 LOC106573878 coding upstream 244940 17637409 ~ 17644659 (-)
jak3 jak3 coding upstream 480127 17872596 ~ 17911527 (-)
G16228 NA non-coding downstream 12535 17377755 ~ 17378361 (-)
G16220 NA non-coding downstream 28347 17362332 ~ 17362549 (-)
G16218 NA non-coding downstream 30123 17360516 ~ 17360773 (-)
G16216 LOC106573893 non-coding downstream 33918 17354402 ~ 17356978 (-)
G16209 LOC106573893 non-coding downstream 43027 17344408 ~ 17347869 (-)
G16271 NA non-coding upstream 55441 17447910 ~ 17448363 (-)
G16272 NA non-coding upstream 56574 17449043 ~ 17449261 (-)
G16274 NA non-coding upstream 59279 17451748 ~ 17452224 (-)
G16275 NA non-coding upstream 60004 17452473 ~ 17452740 (-)
G16277 NA non-coding upstream 60674 17453143 ~ 17453557 (-)
G16161 LOC106573901 other downstream 133655 17255236 ~ 17257241 (-)
G16100 LOC106573897 other downstream 254539 17131420 ~ 17136357 (-)
LOC110492105 homer3 other downstream 518968 16838135 ~ 16871992 (-)
G15470 NA other downstream 859420 16531047 ~ 16531476 (-)
LOC110531395 LOC106613616 other downstream 1174600 16181514 ~ 16295527 (-)
LOC110497564 LOC106573866 other upstream 697411 18089520 ~ 18098678 (-)
LOC110497762 LOC106573859 other upstream 997654 18390123 ~ 18450517 (-)
mydgf LOC106573827 other upstream 1484408 18876547 ~ 18888907 (-)
LOC110502937 ccl25 other upstream 2238024 19630376 ~ 19633058 (-)
G20266 NA other upstream 3406651 20799120 ~ 20800008 (-)

Expression


Co-expression Network